TCONS_00019819 (transcript) - C. hemisphaerica

Overview
NameTCONS_00019819
Unique NameTCONS_00019819
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length263

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00019819 ID=TCONS_00019819|Name=TCONS_00019819|organism=Clytia hemisphaerica|type=transcript|length=263bp
GAAAGTTTTAGTAGTTTAATAGCTTTGCCCCTGGTGCCagttttgtgatc
aatttcatcaaaattaagtgttgataggacatcagatggaagattacctt
ggaggtatttttgaataaataagatattcattactttcacctgatcaaag
attttgagcaatttaagtTCAGCAAACAGGGGAGTGGCAGAAGTTCTTGG
TTCACTAAAGGTCATGAGTCTTAGTGCAGTGTTTTGAAGAGTAAGAATTC
TATGTGTGACAGN
Run BLAST on NCBI

transcript from alignment at sc0000336:153235..153497

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00019819 ID=TCONS_00019819|Name=TCONS_00019819|organism=Clytia hemisphaerica|type=transcript|length=263bp|location=Sequence derived from alignment at sc0000336:153235..153497 (Clytia hemisphaerica)
NCTGTCACACATAGAATTCTTACTCTTCAAAACACTGCACTAAGACTCAT
GACCTTTAGTGAACCAAGAACTTCTGCCACTCCCCTGTTTGCTGAactta
aattgctcaaaatctttgatcaggtgaaagtaatgaatatcttatttatt
caaaaatacctccaaggtaatcttccatctgatgtcctatcaacacttaa
ttttgatgaaattgatcacaaaactGGCACCAGGGGCAAAGCTATTAAAC
TACTAAAACTTTC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_011146XLOC_011146Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00019819-exon-sc0000336-1491911889:153235..153497TCONS_00019819-exon-sc0000336-1491911889:153235..153497Clytia hemisphaericaexon
TCONS_00019819-exon-sc0000336-1510915933:153235..153497TCONS_00019819-exon-sc0000336-1510915933:153235..153497Clytia hemisphaericaexon
TCONS_00019819-exon-sc0000336-1575043694:153235..153497TCONS_00019819-exon-sc0000336-1575043694:153235..153497Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000336supercontigsc0000336:153235..153497 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
19.8848	17.1643	30.0345	30.7336	26.1271	20.1468	17.9545	25.3713	6.83184	12.7532	15.8428	7.82408	8.60415	5.72872	6.16475	8.79033	11.5004	14.4648	5.57284	14.1825	9.13209	25.9121	1.97706	10.7203	12.9754	29.7838	28.9262	27.3238	6.05702	7.988
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00019819 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top