TCONS_00019806 (transcript) - C. hemisphaerica

Overview
NameTCONS_00019806
Unique NameTCONS_00019806
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2657

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00019806 ID=TCONS_00019806|Name=TCONS_00019806|organism=Clytia hemisphaerica|type=transcript|length=2657bp
gtcagaaagaaaaaatgaataattgACTATCAATGTCCCTTTACAGTAAt
tgcaattttcaaagaaatttttcagtACTCAAATAAGATCATCAAACAGA
ATCTATAATGTCTCAACAATTATGACAAAAATATAtgtagtaaaataaaa
aattagaggTTAAATATTGTATATTataatttacagcaaaataggGTAAT
TTTCTGAAGATCCACCGCCAATAAATGCCCAAAACTTGTTCTGGTTGATA
AATCGATTATTGATTTTCAACAAAGCACGACGTATAGATTCCTTCTCCTT
TTGTTTTGCTTCTTGTTTCTCTTTCATTAACTGTTTACGTTTCAGTTTTT
TCAGTTCCTTTcgattgattttaattttaggTTCTTGTTTCTTTGACAAT
GGCTTAGGTTTTTCAGGTGGtaaaaagacttcaaaaatctttttcttttt
aacaaattgACGTAATCCATAGTTAGTGCTTTGACGTGTAGCTGTGACAA
TACCTAGTCGTGTGATATCGTAAGAGGATAAGCCAGCCTTTTCCAATAAC
TCATCATCACGCCAATCAGCAGTGCTCGAACATAAATGAATAACATTTTC
GATGGTTTCCTTAGAAAGGTTTACTAATTTAATAGTGAGTGGTTTAATCT
TCCTTTGTTTCAGTTTTCGAATGATCGAAGTATCAGTGTCAGTGTCGGTG
TCTTGTTGATACCTGGCGGATAAATTGCTACCAAGAAAAGACTTATACTT
CCTAGATACTGGTGATTTCTTGACTAGCGGTATCAAAGAGGGCTTAACAG
GCGATTTACCAACAGTCGGGAAGGATCTATTCAATGATTGTTTTCGTTTC
ACTTTATGATAAGCATCCAATAAATTATCCATACATTCTTCATCACCAAC
AAAAAGAGAAGATTCGACCTGAGATGATGGCTCACTATTTACTACCTCCT
CTTTAATTTCTGTTTTCACATTCTCAGTTTTGACCGACGACGTATTGATG
TAATTATTCTCTTCATCAGGCGAAGTAGAAGAAGATCCATCATCATCATG
TGATGTCATTGACGAGCTATCGTCCTCACCTTCATTATCACCATCACGTG
CTTCATCATCAGATTCCACATCTTCTtctaattctttttcaattttcatc
gatttttcaAGCTCTTCTAATTCAGTATCATCAGATAATTCAACATACTC
TTCTTTAACACGGATCACTTTCTTTCCTGAACTTGTATATTCTATATCCG
ATACAGTCATTACCGAACATTGACTGTCACTGTCTGAGTCTGATACTTCA
ACGTAGTTTTCGACAACAGATTTTCTCAAAACGTATTTTAATGATGATGA
GGTTGGACTCTTTTTTACAGGTGACAGTCTCAATCGTGTCCTTGGATGAA
TCGGTTGTTTGTTTGTATCAATGTCAATATTCAAAGGTGTAACAATGGAA
GAAGAATTTGTTGCCTGCTGTTCTTCAATGTTTAGTCTGTTAGGAATTGG
TGATTTAGGTTTGTCAGGTGTATCAAGCCGTTTACGTAAAGTCAACAATT
TTTCTGCCACACAGTCTTCATACCGAGCCATAAATTCTGGAGTATTTACA
TTCCCTTCTTTAGATTTAACAGAGTTAATAATTTCCTTAGTTGGAGTTGA
AAAGCCATCTTGCTGAGCCTTACTAGCAGAGGATGTGGAATATCTATTGT
CTGGGCTGGTGTCAATGTTTTTACTATTTTGTATACTCTGCTCTTGGTAG
TAATCggtcaaaataatttgaaagtGTCTTAATTCATAACCGTGCACTTT
GTATGTTTGAAATTTAATAATATTTCCAGCTTCTTGTTGGCGTTGTAAAA
ACCGTTCcacttttttagatttcttaAGAACAACCTGAGGGGAAAGTTGG
TGTAAATCAAGTTTAGTTGGTCCCACAACTATTTGATGTGGACAGGCACA
ATTTTCTTGAGCCTGAGGAGAGGAGCGGGTTGATGGTATAGTAATTGGTT
GCGGTGGTGGCGGGGGAGGAGGGGTTGGCGGAGGCGTCACCATTCTTGGT
TCGTCAATCATCAAAATATCATCGTTTATCAATACAACGTCATTTCTGTG
GTTATTAATTTCCATCATAACAATTTCTTCCTCGTCAACGTCATTCTCAT
TTGGGTCTGCGTCTACGACAATTTGTTCAATAACATCCTCATTATCTTCT
ACAAGCTCCTGTGGTGAGTCTCCATTCTCGGATCCAGATTCAATAACCTG
GACACTCTCTTCAGTACTGACAACATTGTCTGCTTTGCTTGATTCTACCG
CAAAATCAACACAATCTTCTAATGTTGTCTTAGAATTTTGGTTGTCATGT
TTGCTGTCTTTTTGGTCCATTAGAGCCATTCTTTTAGCTTTTGGACATGG
TAAAAAAGGTCCAGTATGTCGCCTTTTGACAGAAGCTATAGCAGGATTTT
GCATACTCCTTGTTCGAGTATGGTCACTCATTTTTAAATCAGCACATTAA
CGATGTATACTATCtcaattttaattttgcaaGCCATAGATTTCTAAAAG
GAAACAAATCATAGGCTAAACAAGATGAAAGTCAGGAATGACCAATGAAA
ATTTACTCAGGTAGGGGGAtactaaaatgaaaaatgattggATTCTCTTG
AGGCCTT
Run BLAST on NCBI

transcript from alignment at sc0000336:163776..166496-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00019806 ID=TCONS_00019806|Name=TCONS_00019806|organism=Clytia hemisphaerica|type=transcript|length=2721bp|location=Sequence derived from alignment at sc0000336:163776..166496- (Clytia hemisphaerica)
GTCAGAAAGAAAAAATGAATAATTGACTATCAATGTCCCTTTACAGTAAT
TGCAATTTTCAAAGAAATTTTTCAGTACTCAAATAAGATCATCAAACAGA
ATCTATAATGTCTCAACAATTATGACAAAAATATATGTAGTAAAATAAAA
AATTAGAGGTTAAATATTGTATATTATAATTTACAGCAAAATAGGGTAAT
TTTCTGAAGATCCACCGCCAATAAATGCCCAAAACTTGTTCTGGTTGATA
AATCGATTATTGATTTTCAACAAAGCACGACGTATAGATTCCTTCTCCTT
TTGTTTTGCTTCTTGTTTCTCTTTCATTAACTGTTTACGTTTCAGTTTTT
TCAGTTCCTTTCGATTGATTTTAATTTTAGGTTCTTGTTTCTTTGACAAT
GGCTTAGGTTTTTCAGGTGGTAAAAAGACTTCAAAAATCTTTTTCTTTTT
AACAAATTGACGTAATCCATAGTTAGTGCTTTGACGTGTAGCTGTGACAA
TACCTAGTCGTGTGATATCGTAAGAGGATAAGCCAGCCTTTTCCAATAAC
TCATCATCACGCCAATCAGCAGTGCTCGAACATAAATGAATAACATTTTC
GATGGTTTCCTTAGAAAGGTTTACTAATTTAATAGTGAGTGGTTTAATCT
TCCTTTGTTTCAGTTTTCGAATGATCGAAGTATCAGTGTCAGTGTCGGTG
TCTTGTTGATACCTGGCGGATAAATTGCTACCAAGAAAAGACTTATACTT
CCTAGATACTGGTGATTTCTTGACTAGCGGTATCAAAGAGGGCTTAACAG
GCGATTTACCAACAGTCGGGAAGGATCTATTCAATGATTGTTTTCGTTTC
ACTTTATGATAAGCATCCAATAAATTATCCATACATTCTTCATCACCAAC
AAAAAGAGAAGATTCGACCTGAGATGATGGCTCACTATTTACTACCTCCT
CTTTAATTTCTGTTTTCACATTCTCAGTTTTGACCGACGACGTATTGATG
TAATTATTCTCTTCATCAGGCGAAGTAGAAGAAGATCCATCATCATCATG
TGATGTCATTGACGAGCTATCGTCCTCACCTTCATTATCACCATCACGTG
CTTCATCATCAGATTCCACATCTTCTTCTAATTCTTTTTCAATTTTCATC
GATTTTTCAAGCTCTTCTAATTCAGTATCATCAGATAATTCAACATACTC
TTCTTTAACACGGATCACTTTCTTTCCTGAACTTGTATATTCTATATCCG
ATACAGTCATTACCGAACATTGACTATCACTGTCTGAGTCCGAAACTTCA
ACANTCTATATCCGATACAGTCATTACCGAACATTGACTGTCACTGTCTG
AGTCTGATACTTCAACGTAGTTTTCGACAACAGATTTTCTCAAAACGTAT
TTTAATGATGATGAGGTTGGACTCTTTTTTACAGGTGACAGTCTCAATCG
TGTCCTTGGATGAATCGGTTGTTTGTTTGTATCAATGTCAATATTCAAAG
GTGTAACAATGGAAGAAGAATTTGTTGCCTGCTGTTCTTCAATGTTTAGT
CTGTTAGGAATTGGTGATTTAGGTTTGTCAGGTGTATCAAGCCGTTTACG
TAAAGTCAACAATTTTTCTGCCACACAGTCTTCATACCGAGCCATAAATT
CTGGAGTATTTACATTCCCTTCTTTAGATTTAACAGAGTTAATAATTTCC
TTAGTTGGAGTTGAAAAGCCATCTTGCTGAGCCTTACTAGCAGAGGATGT
GGAATATCTATTGTCTGGGCTGGTGTCAATGTTTTTACTATTTTGTATAC
TCTGCTCTTGGTAGTAATCGGTCAAAATAATTTGAAAGTGTCTTAATTCA
TAACCGTGCACTTTGTATGTTTGAAATTTAATAATATTTCCAGCTTCTTG
TTGGCGTTGTAAAAACCGTTCCACTTTTTTAGATTTCTTAAGAACAACCT
GAGGGGAAAGTTGGTGTAAATCAAGTTTAGTTGGTCCCACAACTATTTGA
TGTGGACAGGCACAATTTTCTTGAGCCTGAGGAGAGGAGCGGGTTGATGG
TATAGTAATTGGTTGCGGTGGTGGCGGGGGAGGAGGGGTTGGCGGAGGCG
TCACCATTCTTGGTTCGTCAATCATCAAAATATCATCGTTTATCAATACA
ACGTCATTTCTGTGGTTATTAATTTCCATCATAACAATTTCTTCCTCGTC
AACGTCATTCTCATTTGGGTCTGCGTCTACGACAATTTGTTCAATAACAT
CCTCATTATCTTCTACAAGCTCCTGTGGTGAGTCTCCATTCTCGGATCCA
GATTCAATAACCTGGACACTCTCTTCAGTACTGACAACATTGTCTGCTTT
GCTTGATTCTACCGCAAAATCAACACAATCTTCTAATGTTGTCTTAGAAT
TTTGGTTGTCATGTTTGCTGTCTTTTTGGTCCATTAGAGCCATTCTTTTA
GCTTTTGGACATGGTAAAAAAGGTCCAGTATGTCGCCTTTTGACAGAAGC
TATAGCAGGATTTTGCATACTCCTTGTTCGAGTATGGTCACTCATTTTTA
AATCAGCACATTAACGATGTATACTATCTCAATTTTAATTTTGCAAGCCA
TAGATTTCTAAAAGGAAACAAATCATAGGCTAAACAAGATGAAAGTCAGG
AATGACCAATGAAAATTTACTCAGGTAGGGGGATACTAAAATGAAAAATG
ATTGGATTCTCTTGAGGCCTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_011138XLOC_011138Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00019806-exon-sc0000336-1575043694:165229..166496TCONS_00019806-exon-sc0000336-1575043694:165229..166496Clytia hemisphaericaexon
TCONS_00019806-exon-sc0000336-1575043694:163776..165164TCONS_00019806-exon-sc0000336-1575043694:163776..165164Clytia hemisphaericaexon
TCONS_00019806-exon-sc0000336-1510915933:165229..166496TCONS_00019806-exon-sc0000336-1510915933:165229..166496Clytia hemisphaericaexon
TCONS_00019806-exon-sc0000336-1510915933:163776..165164TCONS_00019806-exon-sc0000336-1510915933:163776..165164Clytia hemisphaericaexon
TCONS_00019806-exon-sc0000336-1491911889:165229..166496TCONS_00019806-exon-sc0000336-1491911889:165229..166496Clytia hemisphaericaexon
TCONS_00019806-exon-sc0000336-1491911889:163776..165164TCONS_00019806-exon-sc0000336-1491911889:163776..165164Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000336supercontigsc0000336:163776..166496 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
6.13035	5.38449	2.88802	2.66494	14.9316	10.6409	10.0243	10.4312	4.1767	6.00552	6.28428	2.61568	4.02891	3.24315	3.61268	4.84841	6.81056	6.3896	2.41873	2.19248	3.41898	3.11661	10.7013	11.2397	10.8764	12.6371	5.18663	2.86309	10.5361	11.3574
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00019806 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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