TCONS_00019805 (transcript) - C. hemisphaerica

Overview
NameTCONS_00019805
Unique NameTCONS_00019805
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length295

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00019805 ID=TCONS_00019805|Name=TCONS_00019805|organism=Clytia hemisphaerica|type=transcript|length=295bp
taggtctacactgtaaaAGAGAATCTAAGttAAGAACAAGATGATTTTAA
GACATTGGAAGGATACAACCTGAACATAAGCTATGAATTTCATACGAGGA
ATAGTAAGAAAAGGCAAAGGGGCCAACTATGggtcaaatgaaaaagaaag
tcCGGCTTTGCAAAAGGAGAGGAGTCTTTGTGTTCAACATCTTCGCAAGC
TANAAAAATTTTTTCAGGTTCGCCTGatgagaaatttttatcccGGGTTT
TCAAGTGGATGGAACAAAATTTTATCATTCATTATTCATACCTGA
Run BLAST on NCBI

transcript from alignment at sc0000336:141830..143762-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00019805 ID=TCONS_00019805|Name=TCONS_00019805|organism=Clytia hemisphaerica|type=transcript|length=1933bp|location=Sequence derived from alignment at sc0000336:141830..143762- (Clytia hemisphaerica)
TAGGTCTACACTGTAAAAGAGAATCTAAGGTAAGCTATTAGGAAATGAGG
CGAACCCTAAAAATTTTTTTGTTTCCGGTCGACCGGGTGACNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNCCGGGTGACGAAAAAAACACTCACCCG
GCCGGCCGCAAAAAATTTTTTTTTGCTAAATTTCGATCCCAAAACTCGAT
TTTTTAAAGCACTCATAGAAGTTAAAATGATGGTCTTCTTTACCTTAAAT
CTGTAGTAAATCTGTGCTACAGGCTTCCGCATAAGAAAAATTCACGTGTG
ATCATTGCACGCCTAGATTTTGATTCATAGTGGTCTAGGCGTGCGATTAT
TCAAATACTTAATTTTCATCGTTTATAATATTTTCAATTGTGTTTTAATA
TCTCTAAGAACTGGACACTCTCTTTCATTTTGAATATTTATCTTCAATTG
CTAAAGGCTCCAAACTGTGATTACGAAGGGACCTTTTTTGAGAAGAAAGT
AGAGTGAGAGAAACATTTCCCCAATTTTTTAAATCCTCACTTTATGAATA
TTTCTTTTTATTTTACTCACAAGTCAGCATGATTCCTTTTATAAAAACAA
AGCTGTTTACTTACTGAAAAGTCCCCACTTTGTGAATGTTTCTATTTATT
TTAATCACAAATCAGCATGATTCTTTTATAAAAACCAAGTTGTATATAAA
AAAACATTCTTAAAAGTTGAGTTGCAAGCAAGAATTAACAAAAACAATGC
AGGGTTTAGTTTGAGATGAATAAAATTTCATTTCTTTAACAATGATCAGG
ATAAAACCTTCATTCCAAGTGATTTCGTGCATTTTACAGTAGAATATAAA
ATATCACGTGCGATAAATCACACGCCTTAAAAACTGATTCACAAAAGTTT
TCCAAACAAACAAACTAACCCTAACCCTAACGATGATGTACGAAAAAAAA
TGCGTCCGAGTGACGACAAAATAAATTTTCACCCTGGCCGGTGGACCGGA
AACAAAAAATTTTTTCAGGTTCGCCTGATGAGAAATTTTTATCCTGGGTT
TTCAATTGGATGGAACAAAATTTTATCATTCATTATTCATACCTGACACC
CTTGATGGTCTAATCAGGTTTGATTCTACCCATAACTGGGTTATGTAGTT
TTGAATAGAACTTTAGAGGGACACACATGGGTCTATTGAATAAGTACAAA
CAGGTAACAGCACTGTGTTGTAAGAGGCAAATTGAAATTAGATGACCTTA
TCTTTAAAAAACTTAAGCTGTAGTAAATAGTCATTCATAGACCATTGTGA
TAACCTAAAGGACTACGCTAGACTCAAGAACCTTCTGCCAAAACTTTTCA
TTAGTCTCGAAAGCTCTCTGTAACATTCTTGATCTTATTCAAATATGTTA
AGTTTGAGTAATTTGTGAAACATGAAATTTTTAGATTATTTTGATTTTGT
TGTTCACTATGGCAATTTTTGTGTTTTAATAGTAGGCCATCGGAAGAGCA
AAATTTTAAAATATTTTGTCTTCTTAAGCAAAGAAAGTTTCAGCACTGAT
TATCTTTACTCAAAACTCAACTCGATAGCAGTAATAATAATATATTCATA
TTTGATTTTTCTTTCAGTTAAGAACAAGATGATTTTAAGACATTGGAAGG
ATACAACCTGAACATAAGCTATGAATTTCATACGAGGAATAGTAAGAAAA
GGCAAAGGGGCCAACTATGGGTCAAATGAAAAAGAAAGTCCGGCTTTGCA
AAAGGAGAGGAGTCTTTGTGTTCAACATCTTCGCAAGCTANAAAAATTTT
TTCAGGTTCGCCTGATGAGAAATTTTTATCCCGGGTTTTCAAGTGGATGG
AACAAAATTTTATCATTCATTATTCATACCTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_011137XLOC_011137Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00019805-exon-sc0000336-1575043694:143734..143762TCONS_00019805-exon-sc0000336-1575043694:143734..143762Clytia hemisphaericaexon
TCONS_00019805-exon-sc0000336-1575043694:141830..142095TCONS_00019805-exon-sc0000336-1575043694:141830..142095Clytia hemisphaericaexon
TCONS_00019805-exon-sc0000336-1510915933:143734..143762TCONS_00019805-exon-sc0000336-1510915933:143734..143762Clytia hemisphaericaexon
TCONS_00019805-exon-sc0000336-1510915933:141830..142095TCONS_00019805-exon-sc0000336-1510915933:141830..142095Clytia hemisphaericaexon
TCONS_00019805-exon-sc0000336-1491911889:143734..143762TCONS_00019805-exon-sc0000336-1491911889:143734..143762Clytia hemisphaericaexon
TCONS_00019805-exon-sc0000336-1491911889:141830..142095TCONS_00019805-exon-sc0000336-1491911889:141830..142095Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000336supercontigsc0000336:141830..143762 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.823087	1.20396	0	0	0	0	0	0	3.63337	5.27779	3.8925	3.9855	3.6826	3.21117	1.88188	2.50358	3.76425	4.37082	0.837699	3.93851	2.52814	3.29964	0.471868	2.69957	0.883712	0	4.24933	2.34331	4.49772	3.0611
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00019805 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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