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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00019801 ID=TCONS_00019801|Name=TCONS_00019801|organism=Clytia hemisphaerica|type=transcript|length=10058bp transcript from alignment at sc0000336:107718..141364- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00019801 ID=TCONS_00019801|Name=TCONS_00019801|organism=Clytia hemisphaerica|type=transcript|length=33647bp|location=Sequence derived from alignment at sc0000336:107718..141364- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00019801 vs. Swiss-Prot (Human)
Match: WDFY3 (WD repeat and FYVE domain-containing protein 3 OS=Homo sapiens GN=WDFY3 PE=1 SV=2) HSP 1 Score: 1551.95 bits (4017), Expect = 0.000e+0 Identity = 928/2350 (39.49%), Postives = 1353/2350 (57.57%), Query Frame = 2
Query: 2423 SAISRIESLLDDEMIEVFDHYSEDLKEEIMRVSDCFEGRPLPQNLVKSVVSLTTPKDVLSTSPLEPPSFVEFSMAEDGYGCLFIPSLTPQPVPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFPPQTGFTYSGWLHIEMLPSALSHLSNIGLLTLEKQWEDLNQQRLVISSVLQIYLDLHSQSIVINTDD----HHVNEKSSSKG-----KAILKLRCEQLFELHHWNHVCVVLNKSMMRNSTVSLYINGQLVANSKMKYIHQ--GIPNGADPNTLKTI-GYIGTHPRHGHIADLVWRQGPASLIEEPVTEENIKFIFHLGPSYTGCFQAPFLGDED-DSQQAKSTP--LVAEEKIXXXXXXXXXXXXXXXXXSSQCIKSDLNVLASEMSISHEDKYTPIRLLPNSASHLNGANRPIGLFCVGNSGLRIFCPNPVASSFVSVGGMSILLCLVAMVTELSELYASLKALTCILQSSKTARKEMKRVEGYQIXXXXXXXXXXXXXXXXXXXVFSLVGTVRSDRESATIPCIKAFNDLLCDLEIWHNTPSDLERSLFTHFNELVTQGQEQLKNIQSLRKLNCVTRLIHVVQDGDISEMTLNTVASVLAVLLKRTGQTSDILIFGQYLASTLPT-QTSEQHVLL---NEEYEDDKELQQMKTTIN-----QRNALLDVLIHLLMQTTEASGINSMFCEQLYKSLGFDWLLLFLGNNVHKETVIRGLRMLCRMLSDVGALNKFQSGSANGFWLIGSEALTAKKANVAAGFNVTETDGEGMRPEHEVNHQSYKQKGIPLLTYLLEEHTDLEEVYFXXXXXXIKSTNMGMGAGLKLDIKTLH----------------LIFWPPVTAEKIREQKLVQVYCLDVVHILLHMVRRLMSEPIPHDKPNHYRVRFPEAIIQFLEFLYQNVPEIYTFTQTAEFLSSLALTLFPLEEDKELLDFNV----ESIDDLVDG-GIPID-----------------------KTGLSDHPCKKHVISFLTAIMVDAMLLT-TGKISTFTDTLLNSFPVSSSTNQQGKFQAEVISSVIREFTSGKTW----TSMNLTASDSNFLKFCINGV-TFAGKVADRMWLGNLETFKEIYKDVLKLLTHLIQHLEGSSH--SLDQVYHSLNRVLLYQISKPAARLTEQTNVLELLHYLTTNSKIVFSNANNEEEFITCLTHWLIVV---------GLQEKARKNSRKISL-SDFQTEEATEVTESNSRDDGLFKLITAAAERVWNVFYLHKKDVIEQVFSIQSSFVVYQPAAPFASSGRTASLDLFKAKEMLGDHAAKCWINFIANEEK--RKNEVLSATLNKSATKKLPNKMLKSL---KREKTNEGL----FTIQETLDWITVHLKAVKALIHMKHSKHTQEISIRNHNAEK----NWSNMELELISEGGIWGPEKVNTLEKWMLDDVEGPSRMRKRLTKNDMFYTHYPYI---EQE------------------KEQLLTKHRMAFSHDSKILFQLCQKYTNP------------------------------KGLPVTVP-----------DKENPFSWRPQLYSLDGFEAEDSVEEVNTQTIIQLLETGEKIFSMYRCARVRGLDSAEGLFLFGKNHFYVIDGFTLMSAESKKGSAKEIKDIYTLAEGSHEPLIP--AAKGNSILKRSFFKWDFDVIKEVHKRRYLLQDIAIEVFSNDGSNHLLVFPKKTARDKVYDRINRVSPALISAQESVAGMSSDTDVEVGAGLFTTLLSGERSVTQKWVRGEITNFQYLMFLNTLAGRSYNDLMQYPIFPWVLKDYTSQFLDLTDKNTFRDFSKPMGAQGPNRLQNYRKRFKEWEDPTGKTPAYYYGTHYSSAMIVASFLIRLEPFTQYFLRLQGGHFDLPDRLFHSIKDSWLSSSESNMADIKELIPEFFYLPDFLTNKNKFDLGTKQNGEELGDIILPPWAKGDAIEFIRLHREALECDYVSAHLNEWIDLVFGYKQQGQAAIDADNIFHHLFYEKSVDLDQITDPTERRATIAFINNFGQMPKQLFKKPHPVKRVMRSQDSNNSLQTGTLPSTHQHTYSDKLFFHHLSSLVPSVQPVKELKNAVGQILTSEKSLTAATEINKAIFLGSLNR-IGWGYGDFSLRY--FSSDEKLLAVFEGVFT-GQVLCAACLEKNQFITGGTSSAVCVWKVDQNAKDKSYFLSLVKVLHGHQGDVLSVVVSKAYNMIVTGSHDKSCIIWDLRKLTYTRRLNIRSGGPVTSIAINNSTGDIVTCAGTHIYVWTVNGELLVQENTSPAITGQIHCCVVSEFNEWDEQNVIITGSSDGLVKMWGIQFCDAAE 8971
S I+ +E L D + + + + + +++ + EG +P VK +VS+TTP D+ P+FVEF + +G+GCLF+PSL P P ++ + + + FPP +G +YS W IE S ++ + LLT+ ++ Q + L I L +S++++T + ++V++ S + RC +L W+H+ +V++K M++NST +LYI+GQLV K+ Y+H G A+P + T+ YIGT P IA LVWR GP +EE + N+ I+ LGP+Y G FQA + +D S+ +P LV EEK+ L+ + T+ ++ K D +A ++ IS + TP++L+ NSA HLNG+ R IG +G G+R F P PVA++ VGG + +L LVAM +++ LYA++KAL C+++S+ A KEM+R++GYQ+LA LLKKK+ LLN+HILHL FSLVGTV S E++ IP AF DLLCD E+W + P +L SLF HF EL+T+ E KN + +R+ + +L+ ++D +S+ T+ +++VL+ LL+ ++D+L FGQ+++STLPT E+ V++ NEE D ++ ++ RN LLD+L+ L+ + E + IN CE+L K+LGFDW+++F+ ++H TV +R+L +LS+ L KF+ G + G WL ++++ K GFNV + G G E+N + G P+L L +HT++ +YFLL++L ++ + L++ + + IF P ++ + + C + V +LL M+R +++ P ++ + +P ++QF +LY NVP++ + + +FL +LA T+FP FN+ E + DL D G P + KT L++HP KK V F+ +++D + LT K + D LL + P S+ QQ +FQ ++ SV+ + S+ +T+ S + +N V F +V D++W G F + K ++ + LI + S SLD VYH LNR +LYQ S+ + +Q +L+ L LT N ++ N+++EFI+CL H LI + GL+ +AR + I + SD + + + S R +L+ A RVW KK V+E++F + P G +D+ A+ ++ + A KCW N +A+E+K + E L+ T ++ L L +R + GL + QE W+ H+ V+ L+ ++ ++ + R NA K W +E EL+ E G+WGP + L+KWML+ EGP RMRK++ +NDMFY HYPY+ EQE ++ ++R A S+DSK + NP KGL V P D+EN + Q+ E E E+ + T+++LLE GEKI MYRCARV+GLD++EGL LFGK HFYVIDGFT+ + +EI+DI TL HEP+IP A +G S LKR+ + ++ IKEVHKRRYLLQ IA+EVFS DG N+LL F +K R+KVY R V P+L + ESV+G +T VE G+GL +TL+ GE+SVTQ+W RGEI+NFQYLM LNTLAGRSYNDLMQYP+FPW+L DY S+ +DLT+ TFR+ +KPMGAQ RL Y+KR+K+WEDP G+TPAY+YGTHYSSAMIVAS+L+R+EPFTQ FLRLQGGHFDL DR+FHS++++W S+S+ NMAD+KELIPEFFYLP+FL N N FDLG KQNG +LGD+ILPPWAKGD EFIR+HREALECDYVSAHL+EWIDL+FGYKQQG AA++A N+FHHLFYE VD+ I DP + ATI FINNFGQ+PKQLFKKPHP KRV RS+ + ++ LP + SDK+FFHHL +L PS+ PVKELK VGQI+ ++K + A E NK + + N+ WGY D S R + SD K + V+E + GQ+LCA C ITGGTS+ VCVW++ +K+K+ ++L + L GH V S AY++IV+GS D++CIIWDL KL++ +L PV+++ IN TGDIV+CAGT+I+VW++NG +V NT + QI CC +SE NEWD QNVI+TG SDG+V+ W ++F E
Sbjct: 980 SMITSLEGLGTDNVFSLHEDNHYRISKSLVKSA---EGSTVPLTRVKCLVSMTTPHDIRLHGSSVTPAFVEFDTSLEGFGCLFLPSLAPHNAPTNNTVTTGLIDGAVVSGIGSGERF-------FPPPSGLSYSSWFCIEHFSSPPNN-HPVRLLTVVRRANSSEQHYVC----LAIVLSAKDRSLIVSTKEELLQNYVDDFSEESSFYEILPCCARFRCGELIIEGQWHHLVLVMSKGMLKNSTAALYIDGQLVNTVKLHYVHSTPGGSGSANPPVVSTVYAYIGTPPAQRQIASLVWRLGPTHFLEEVLPSSNVTTIYELGPNYVGSFQAVCMPCKDAKSEGVVPSPVSLVPEEKVSFGLYALSVSSLTVARIRKVYNKLDSKAIAKQLGISSHENATPVKLIHNSAGHLNGSARTIGAALIGYLGVRTFVPKPVATTLQYVGGAAAILGLVAMASDVEGLYAAVKALVCVVKSNPLASKEMERIKGYQLLAMLLKKKRSLLNSHILHLTFSLVGTVDSGHETSIIPNSTAFQDLLCDFEVWLHAPYELHLSLFEHFIELLTESSEASKNAKLMREFQLIPKLLLTLRDMSLSQPTIAAISNVLSFLLQGFPSSNDLLRFGQFISSTLPTFAVCEKFVVMEINNEEKLDTGTEEEFGGLVSANLILLRNRLLDILLKLIYTSKEKTSINLQACEELVKTLGFDWIMMFMEEHLHSTTVTAAMRILVVLLSNQSILIKFKEGLSGGGWLEQTDSVLTNKIGTVLGFNVGRSAG-GRSTVREINRDACHFPGFPVLQSFLPKHTNVPALYFLLMALFLQQPVSELPENLQVSVPVISCRSKQGCQFDLDSIWTFIFGVPASSGTVVSS--IHNVCTEAVFLLLGMLRSMLTSPWQSEEEGSWLREYPVTLMQFFRYLYHNVPDLASMWMSPDFLCALAATVFP---------FNIRPYSEMVTDLDDEVGSPAEEFKAFAADTGMNRSQSEYCNVGTKTYLTNHPAKKFVFDFMRVLIIDNLCLTPASKQTPLIDLLLEASPERSTRTQQKEFQTYILDSVMDHLLAADVLLGEDASLPITSGGS--YQVLVNNVFYFTQRVVDKLWQG---MFNKESKLLIDFIIQLIAQSKRRSQGLSLDAVYHCLNRTILYQFSRAHKTVPQQVALLDSLRVLTVNRNLILGPGNHDQEFISCLAHCLINLHVGSNVDGFGLEAEARMTTWHIMIPSDIEPDGSYSQDISEGR-----QLLIKAVNRVWTELIHSKKQVLEELFKV---------TLPVNERGH---VDIATARPLIEEAALKCWQNHLAHEKKCISRGEALAPTTQSKLSRVSSGFGLSKLTGSRRNRKESGLNKHSLSTQEISQWMFTHIAVVRDLVDTQYKEYQE----RQQNALKYVTEEWCQIECELLRERGLWGPPIGSHLDKWMLEMTEGPCRMRKKMVRNDMFYNHYPYVPETEQETNVASEIPSKQPETPDDIPQKKPARYRRAVSYDSKEYYMRLAS-GNPAIVQDAIVESSEGEAAQQEPEHGEDTIAKVKGL-VKPPLKRSRSAPDGGDEENQEQLQDQIAEGSSIEEE---EKTDNATLLRLLEEGEKIQHMYRCARVQGLDTSEGLLLFGKEHFYVIDGFTMTAT-------REIRDIETLPPNMHEPIIPRGARQGPSQLKRTCSIFAYEDIKEVHKRRYLLQPIAVEVFSGDGRNYLLAF-QKGIRNKVYQRFLAVVPSLTDSSESVSGQRPNTSVEQGSGLLSTLV-GEKSVTQRWERGEISNFQYLMHLNTLAGRSYNDLMQYPVFPWILADYDSEEVDLTNPKTFRNLAKPMGAQTDERLAQYKKRYKDWEDPNGETPAYHYGTHYSSAMIVASYLVRMEPFTQIFLRLQGGHFDLADRMFHSVREAWYSASKHNMADVKELIPEFFYLPEFLFNSNNFDLGCKQNGTKLGDVILPPWAKGDPREFIRVHREALECDYVSAHLHEWIDLIFGYKQQGPAAVEAVNVFHHLFYEGQVDIYNINDPLKETATIGFINNFGQIPKQLFKKPHPPKRV-RSRLNGDNAGISVLPG----STSDKIFFHHLDNLRPSLTPVKELKEPVGQIVCTDKGIL-AVEQNKVLIPPTWNKTFAWGYADLSCRLGTYESD-KAMTVYECLSEWGQILCAICPNPKLVITGGTSTVVCVWEMG-TSKEKAKTVTLKQALLGHTDTVTCATASLAYHIIVSGSRDRTCIIWDLNKLSFLTQLRGHR-APVSALCINELTGDIVSCAGTYIHVWSINGNPIVSVNTFTGRSQQIICCCMSEMNEWDTQNVIVTGHSDGVVRFWRMEFLQVPE 3253 HSP 2 Score: 271.937 bits (694), Expect = 2.316e-72 Identity = 152/414 (36.71%), Postives = 264/414 (63.77%), Query Frame = 3
Query: 6 EKSCITLCLANIENHCDKDPLGVIEMFVTLTCVLKXXXXXXXXXXXXFHDCQGYKFLAQTLLRFSESKNAHTQEASRNXXXXXXXXXMTGYEAIFPSG-AISTPFHESEYVIPQPSNSQGVSIRNLEAFKVLMDVFLQTKSENLCLAIINSIQSLLNYDNANYFIIEPIHPFAQFIQRMPDKSQPVKDAIVKLVEFVAFQLSWVPSQELVAMTILFKNPSDKSSQCAI--LNTLIRLVNHNVKYKGILRQAGLIDVMVVALQRYTLSVKDSSSLV----ETKDEEEMKNTKDYIFLLMECLRLLIENNSVNASLFRQHGGSKYTHELIPHQVSRPFALKIFEQLIVD-GGHEDLGTMLGFMHSTPVTDVKLKSDVLSSLIRIFDTNAQTRSVFQEVGGFVYVVSILVSLEGSLA 1223
EK C++ C+ N++ D PL ++EMF L+C LKDS+D S LLD F QGY FL LLR ++K A +++A ++LV L++SL G + P+G PF + +PQP+ +G S+RN++AF VL + FL+ K+ L I+++I ++ DNANYFI+E H +QF +++ K V++ +++EFV F L+++P +EL++++IL K S S C+I + TL++ H+ +K + R+ GL++VMV L +Y +KD + + ++++ +++ K L+ME L +L++ ++ NA +FR+ GG++ H ++ + R AL +QL++ G +D+GT+LG MHS P T+++LK+D+L +L+ + + ++R+VF++VGGFVY+ S+LV++E SL+
Sbjct: 257 EKECLSTCVQNMQQSDDLSPLEIVEMFAGLSCFLKDSSDVSQTLLDDFRIWQGYNFLCDLLLRLEQAKEAESKDALKDLVNLITSLTTYGVSELKPAGITTGAPFLLPGFAVPQPAG-KGHSVRNVQAFAVLQNAFLKAKTSFLAQIILDAITNIYMADNANYFILESQHTLSQFAEKI-SKLPEVQNKYFEMLEFVVFSLNYIPCKELISVSILLK--SSSSYHCSIIAMKTLLKFTRHDYIFKDVFREVGLLEVMVNLLHKYAALLKDPTQALNEQGDSRNNSSVEDQKHLALLVMETLTVLLQGSNTNAGIFREFGGARCAHNIVKYPQCRQHALMTIQQLVLSPNGDDDMGTLLGLMHSAPPTELQLKTDILRALLSVLRESHRSRTVFRKVGGFVYITSLLVAMERSLS 666 HSP 3 Score: 181.8 bits (460), Expect = 4.816e-45 Identity = 74/131 (56.49%), Postives = 98/131 (74.81%), Query Frame = 2
Query: 9098 WKRKLVLRHKLTMHTAYSRADNMEPASITALAISRDHRKVFVGDSRGRIYSWSLSDSVG-NILDHWIKDEVADVCNNCSTKFTFSERKHHCRNCGHVFCGKCSRYESPVVHLKIFKAVRVCVSCYIELKRK 9487
W+R+LV R KLTMHTA+ R DN PA +TAL IS+DH ++ VGDSRGR++SWS+SD G + DHW+KDE D C+ CS +F+ +ER+HHCRNCG +FC KCSR++S + LKI VRVC +CY L+ +
Sbjct: 3386 WERQLVFRSKLTMHTAFDRKDNAHPAEVTALGISKDHSRILVGDSRGRVFSWSVSDQPGRSAADHWVKDEGGDSCSGCSVRFSLTERRHHCRNCGQLFCQKCSRFQSEIKRLKISSPVRVCQNCYYNLQHE 3516 HSP 4 Score: 152.14 bits (383), Expect = 3.919e-36 Identity = 104/334 (31.14%), Postives = 168/334 (50.30%), Query Frame = 2
Query: 1226 VLSSLIRIFDTNAQTRSVFQEVGGFVYVVSILVSLEGSLAEPPVALWVECDCDTILELVWKTFNVLTSAMKDEPVNKIIFMDDVRFKGLMDTVKLLGCFSSSYQKLPKYKAEIIQGKPLLKARLSSVINVE--TPLVEKNSQKYFQMVLSKIILSMATSNFDT------------------WQV----------------------NLKD--QHIVSSSRKIPR--IIHPTAVNGLIEILPLLCDKKMRNKKQGYSDVLLYVVYEVQHLMGSEINQQLMCDAGLPYLLLEKCEEAFTNEHHPLNAPLTKIFERLAGQSLHPRVLRAFCRLGSPL 2089
+L +L+ + + ++R+VF++VGGFVY+ S+LV++E SL+ PP W + + + + EL+ F LT+AM+ EP N F +++++ L D V+ LGCF S +K+ +P + VI++E +P + S+ + + +AT +FD+ W N+ D H+ +SS + IIHP A ++ +L LL + + D+ L V +Q L+ +E NQQ+MC+AGL LL++C A +E H L+ PL ++FERLA Q+L P VLR F RL SPL
Sbjct: 627 ILRALLSVLRESHRSRTVFRKVGGFVYITSLLVAMERSLSCPPKNGWEKVNQNQVFELLHTVFCTLTAAMRYEPANSHFFKTEIQYEKLADAVRFLGCF-SDLRKISAMNVFPSNTQPFQRLLEEDVISIESVSPTLRHCSKLFI------YLYKVATDSFDSRAEQIPPCLTSESSLPSPWGTPALSRKRHAYHSVSTPPVYPPKNVADLKLHVTTSSLQSSDAVIIHPGA---MLAMLDLLASVGSVTQPEHALDLQLAVANILQSLVHTERNQQVMCEAGLHARLLQRCSAALADEDHSLHPPLQRMFERLASQALEPMVLREFLRLASPL 950 The following BLAST results are available for this feature:
BLAST of TCONS_00019801 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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