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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00019799 ID=TCONS_00019799|Name=TCONS_00019799|organism=Clytia hemisphaerica|type=transcript|length=2540bpRun BLAST on NCBI protein sequence of TCONS_00019799-protein >TCONS_00019799-protein ID=TCONS_00019799-protein|Name=TCONS_00019799-protein|organism=Clytia hemisphaerica|type=polypeptide|length=485bp MIKVENFIGGKFTPCSEHIDSFNPSNGQVHARIPDSSSDDVEQAVEAAQKRun BLAST on NCBI transcript from alignment at sc0000336:99192..104908- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00019799 ID=TCONS_00019799|Name=TCONS_00019799|organism=Clytia hemisphaerica|type=transcript|length=5717bp|location=Sequence derived from alignment at sc0000336:99192..104908- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000336:99192..104908- >TCONS_00019799 ID=TCONS_00019799|Name=TCONS_00019799|organism=Clytia hemisphaerica|type=CDS|length=16038bp|location=Sequence derived from alignment at sc0000336:99192..104908- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00019799 vs. Swiss-Prot (Human)
Match: AL8A1 (Aldehyde dehydrogenase family 8 member A1 OS=Homo sapiens GN=ALDH8A1 PE=1 SV=1) HSP 1 Score: 606.29 bits (1562), Expect = 0.000e+0 Identity = 275/483 (56.94%), Postives = 371/483 (76.81%), Query Frame = 2
Query: 863 MIKVENFIGGKFTPCSEHIDSFNPSNGQVHARIPDSSSDDVEQAVEAAQKALPGWSGLSTRERSKVMMKIADLVEQRLDEFAVAESTDQGKPVWLAKAVDIPRTILNFRFFATAILHQMNESTEQSEFGAVNYTVRCAAGIAGLITPWNLPLYLLSFKVAPAIGAGCCVVVKPSEMTSVTAWMLCQVFQEAGLPEGVVNMVFGTGKNAGAAIVQHPKINLLSFTGSTAVGKYIQEKSAQHMKKLSLELGGKNAGVIFADANLDKCIPTSVRSAFANQGEICLCTSRLFVHQDIFDEFCKRYVETVRSTLKVGPPKDNSSKISALVSKEHMEKVKSYIKLAVEEGGTILCGETIDPPLQLPEENSQGYYCQPTVIVGLKDDARCMQEEIFGPVVCIAPFTGEDDVIKRANDVPYGLSATLWTQDVSRLHRLARQFEAGTIWCNCWLVRDLRMPFGGMKMSGIGRECQKESIEFYSEVKTICVQY 2311
++ +ENFI GKF PCS +IDS++PS G+V+ R+P+S D++E AV+AA++A P WS S +ERS+V+ ++ADL+EQ L+EFA AES DQGK + LA+ +DIPR++ NFRFFA++ LH +E T+ G ++YTVR G+AGLI+PWNLPLYLL++K+APA+ AG V+ KPSE+TSVTAWMLC++ +AG+P GVVN+VFGTG G A+V HP++ L+SFTGS + I + SA H KKLSLELGGKN +IF DANLD+CIP +VRS+FANQGEICLCTSR+FV + I+ EF KR+VE R KVG P D I AL+SK H+EKV+SY+K A+ EG I CGE +D L LP N GY+ PTVI +KD++ CM EEIFGPV C+ PF E++VI+RAN+V YGL+AT+W+ +V R+HR+A++ ++G +W NCWL+R+L +PFGGMK SGIGRE K+S +F++E+KTI V++
Sbjct: 7 LLMLENFIDGKFLPCSSYIDSYDPSTGEVYCRVPNSGKDEIEAAVKAAREAFPSWSSRSPQERSRVLNQVADLLEQSLEEFAQAESKDQGKTLALARTMDIPRSVQNFRFFASSSLHHTSECTQMDHLGCMHYTVRAPVGVAGLISPWNLPLYLLTWKIAPAMAAGNTVIAKPSELTSVTAWMLCKLLDKAGVPPGVVNIVFGTGPRVGEALVSHPEVPLISFTGSQPTAERITQLSAPHCKKLSLELGGKNPAIIFEDANLDECIPATVRSSFANQGEICLCTSRIFVQKSIYSEFLKRFVEATRK-WKVGIPSDPLVSIGALISKAHLEKVRSYVKRALAEGAQIWCGEGVD-KLSLPARNQAGYFMLPTVITDIKDESCCMTEEIFGPVTCVVPFDSEEEVIERANNVKYGLAATVWSSNVGRVHRVAKKLQSGLVWTNCWLIRELNLPFGGMKSSGIGREGAKDSYDFFTEIKTITVKH 487 The following BLAST results are available for this feature:
BLAST of TCONS_00019799 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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