TCONS_00019797 (transcript) - C. hemisphaerica

Overview
NameTCONS_00019797
Unique NameTCONS_00019797
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2023

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00019797 ID=TCONS_00019797|Name=TCONS_00019797|organism=Clytia hemisphaerica|type=transcript|length=2023bp
TAAATGTGAGCAGAAAGATAATTGTGAGAGGAATGCGTTCCATTTCGTTG
GTCAACAAGTTGGAAGTGGATTACAAAGGGAGTTTGTTCAAAAGCGCTAT
TTGTCTGGTGGATATTGACGAGGATGGTTTGAACGAACTGTGTGTTGGCT
TCACTAATGGTGAACTCCATGCTTACAAAGGCTTGGACACGACAAAGCCA
TGGAAGTTGAGCAAAGGGTTAGGATCATTGGTTGTGTTGTGCGGAGGACA
TGTTCGAAGCAAAGATGAAACGTTACTTTGTGCATTAGATTCTGAAGGGA
GGTGTAATCTGTTTGACGTCAAAGAAGAACACGTGACATCTGACCATGAT
GGATCGGTAGTCCACCATCTGGCGCTCCAACCTGTTCGCCAACAGAAGAA
ATGCGTTTGGTGCACAAAGAACACCTTCCGCCCAACGCCAAGGTGGCCAT
CCTGGAAGATGTGGACAATGATGGAGTGGCGGAGCTGATCATCGGCTATA
CTGATCGTTATGTTCGCATCTATAAGTGGACCGTTCAAGGAGATCCCTTG
GATGACGTCGAGAAAAAGTTGAGCAAACAAAACACTGAAGAAACGGACAA
AAAATCCACTTTGTCTTTTTCACTCTCGTTATCGAAAGAACCCAAACACC
TTTCGCCTGCACCACGACAAAAGAGTGCTGATACCGCTGAAGAAGGTACC
ATCAACAACAATAACAGCACGCCTTATCACCCAGTTGGTTCGTTTGTACT
CCTGAAGCAATTCTCTTTGATCGGACAGATCGGTTCATTGGCTGTGTGCA
CCACTGTGGAAGGATTGAACCAATTGATCGTGTCACAACCAAACGGTGGA
TATTGCATCTTGGGCCAGTACGATGAAGATGGTTTCACCGAAAACATCAG
CACGCCAACTAGCGTGGAAGCGCCGTCGCCAAGCAACCAAGACTCTTACC
CAATCTTCTACCCGATCACAGCATACGGTAATCGTTCTTTCCAACAACAA
CACATCAACACAGAAATCATCGGAGGTATTCGGCGACAGAAGGGAGCTAC
AGGCGTTATAGGGCTTGCAACGCATGATGGTTATTTCATTATTCTTGATA
ATACATATTTCTCTGGTCAAAACCCAGTTAAAAATTCCTCTAAAAACAAC
TGGTTCGCTATGTCCAAAGTTGACGTCACAAATGACGGTGATGACGAAAT
CGTTTTGTGTGACCTGAACGGTATGACGTACATCATCGATAAAGAACGAA
ATATTGTAAGTTATAATTTCAATGAGAACGTCGCTGCTTTTTGTGCTGGT
TACTATGGAAACAAAGGACGCTCTACGCCATGTCTGTGTTACGTCACTTT
GAGTGGAAAGATTCATTTATATTACGATGTTTGGATCGACGCCATCAAAG
TGCGTTGTGTGCATGCTGCTCTCATTGAGAAGATCAAGAGGAAACCGGAG
CTGCATTACCTGTTGGAACTTTTGCGTGGTGAGAGCGGTGAAGTGGACCA
TGAAAAACTGCAGTCACTTGTTAAGCAATCGGCTTCTCTCAATCGTTTCT
CATCCTCGCTTTTTACCAAGAATAGATAAACTGTAGCATCATACGTCTTA
CATATTGTTTATACCAATATTGTTGTACCAGCTACCTTTCAAACAGAATG
ATTGGTTTCAATCCTGTGCAACCTTTGTGGTTGTCAAAGTAAACAGACTC
ATACTTAACGCGTTCGCTGCCCACTATAAAGTCGTTGTAGAGGAGTCAAA
ATACCGGTAATACTTCAAagggccataacttttgatacaaaaaCATTTGa
ctactttttttcaatttgaaggAATTTGAAGTATTTTTTGAGGCTACAAC
GTACAAGAAACCCTTTGAGTGAAACTATCAACGAAATTAGGGGAGATCAA
TTTTATACGAAAACAAGATAACGATGTAAGTGCATTTTTAGATTGTCCAA
AATAAAGGGTAAAGTTTCATTCTTGTAGAATCAAGAAATCGTGTTCTGTT
TATTGTGTCACTCTGTGTGCCTT
Run BLAST on NCBI

transcript from alignment at sc0000336:96270..99054-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00019797 ID=TCONS_00019797|Name=TCONS_00019797|organism=Clytia hemisphaerica|type=transcript|length=2785bp|location=Sequence derived from alignment at sc0000336:96270..99054- (Clytia hemisphaerica)
TAAATGTGAGCAGAAAGATAATTGTGAGAGGAATGCGTTCCATTTCGTTG
GTCAACAAGTTGGAAGTGGATTACAAAGGGAGTTTGTTCAAAAGCGCTAT
TTGTCTGGTGGATATTGACGAGGATGGTTTGAACGAACTGTGTGTTGGCT
TCACTAATGGTGAACTCCATGCTTACAAAGGTATTCATCCACTTTCATCG
CAACTCGAAGATCTCGCTCACAGTTGATCTTCTGGTCATTATTGTGAGAA
TTGATAAATAATGATGTAAAGTATAACATATTTCACTTTTATTTGCTAGG
CTTGGACACGACAAAGCCATGGAAGTTGAGCAAAGGGTTAGGATCATTGG
TTGTGTTGTGCGGAGGACATGTTCGAAGCAAAGATGAAACGTTACTTTGT
GCATTAGATTCTGAAGGGAGGTGTAATCTGTTTGACGTCAAAGAAGAACA
CGTGACATCTGACCATGATGGATCGTACGTTGTGAGTTTGCTTCCTCTCA
TGTTCTAAAACTTCATCGGCCAAACTTCATTACTCATATTCAGCCACAAT
ACAGTCATTTTTTGTAATCACTTAGAACTTTTATTGAGCTGTCGCACTTT
TTCTAAAGGGTAGTCCACCATCTGGCGCTCCAACCTGTTCGCCAACAGAA
GAAATGCGTTTGGTGCACAAAGAACACCTTCCGCCCAACGCCAAGGTGGC
CATCCTGGAAGATGTGGACAATGATGGAGTGGCGGAGCTGATCATCGGCT
ATACTGATCGTTATGTTCGCATCTATAAGTGGACCGTTCAAGGAGGTTTG
TTCGTTAGTCATCCAGCTGGTTATTAGCTTGATGCTTTATCATTTCACGT
TACTCCTCATGTNATGTTTGTTAGTCATCCAGCTGGTTATTAGCTTGATG
CTTTATCATTTCACGTTACTCCTCATGTCAAGTTCCTAGTTACAGGGAAA
TCACCCTAATTAGCTAACACTTAACGGATTTTCTTCCGCACCATCAATCG
TTCGTGTAAGCGAGGGGATCTTTTAAAGTTTTTTATAACTACTGTGTTAC
TTTGTACGATTAGGCGTCCCACTGCCTGTTATTGTCTCTTTTTTACTTTT
CCTGTAGATCCCTTGGATGACGTCGAGAAAAAGTTGAGCAAACAAAACAC
TGAAGAAACGGACAAAAAATCCACTTTGTCTTTTTCACTCTCGTTATCGA
AAGAACCCAAACACCTTTCGCCTGCACCACGACAAAAGAGTGCTGATACC
GCTGAAGAAGGTACCATCAACAACAATAACAGCACGCCTTATCACCCAGT
TGGTTCGTTTGTACTCCTGAAGCAATTCTCTTTGATCGGACAGATCGGTT
CATTGGCTGTGTGCACCACTGTGGAAGGATTGAACCAATTGATCGTGTCA
CAACCAAACGGTGGATATTGCATCTTGGGCCAGTACGATGAAGATGGTTT
CACCGAAAACATCGTGCGTTTGTATTTACTTTCTGTCTGTATAACCCTCC
TATTGAGTCTATTGAGTTTAAAAATTGAGAGAGGAGAAAGTGAACAGTCA
AAGCTTCTCAGTTTGCAAGCTTGTACTTGATACATACCATGCATATAACA
AGCCAATTTTACCCGTCAGATTCAAAGCGTTCAACTGATTTGTTTTGTTT
TTGTTTCTAGAGCACGCCAACTAGCGTGGAAGCGCCGTCGCCAAGCAACC
AAGACTCTTACCCAATCTTCTACCCGATCACAGCATACGGTAATCGTTCT
TTCCAACAACAACACATCAACACAGAAATCATCGGAGGTATTCGGCGACA
GAAGGGAGCTACAGGCGTTATAGGGCTTGCAACGCATGATGGTTATTTCA
TTATTCTTGATAATACATATTTCTCTGGTCAAAACCCAGTTAAAAATTCC
TCTAAAAACAACTGGTTCGCTATGTCCAAAGTTGACGTCACAAATGACGG
TGATGACGAAATCGTTTTGTGTGACCTGAACGGTATGACGTACATCATCG
ATAAAGAACGAAATATTGTAAGTTATAATTTCAATGAGAACGTCGCTGCT
TTTTGTGCTGGTTACTATGGAAACAAAGGACGCTCTACGCCATGTCTGTG
TTACGTCACTTTGAGTGGAAAGATTCATTTATATTACGATGTTTGGATCG
ACGCCATCAAAGTGCGTTGTGTGCATGCTGCTCTCATTGAGAAGATCAAG
AGGAAACCGGAGCTGCATTACCTGTTGGAACTTTTGCGTGGTGAGAGCGG
TGAAGTGGACCATGAAAAACTGCAGTCACTTGTTAAGCAATCGGCTTCTC
TCAATCGTTTCTCATCCTCGCTTTTTACCAAGAATAGATAAACTGTAGCA
TCATACGTCTTACATATTGTTTATACCAATATTGTTGTACCAGCTACCTT
TCAAACAGAATGATTGGTTTCAATCCTGTGCAACCTTTGTGGTTGTCAAA
GTAAACAGACTCATACTTAACGCGTTCGCTGCCCACTATAAAGTCGTTGT
AGAGGAGTCAAAATACCGGTAATACTTCAAAGGGCCATAACTTTTGATAC
AAAAACATTTGACTACTTTTTTTCAATTTGAAGGAATTTGAAGTATTTTT
TGAGGCTACAACGTACAAGAAACCCTTTGAGTGAAACTATCAACGAAATT
AGGGGAGATCAATTTTATACGAAAACAAGATAACGATGTAAGTGCATTTT
TAGATTGTCCAAAATAAAGGGTAAAGTTTCATTCTTGTAGAATCAAGAAA
TCGTGTTCTGTTTATTGTGTCACTCTGTGTGCCTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_011133XLOC_011133Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00019797-exon-sc0000336-1575043694:98875..99054TCONS_00019797-exon-sc0000336-1575043694:98875..99054Clytia hemisphaericaexon
TCONS_00019797-exon-sc0000336-1575043694:98581..98755TCONS_00019797-exon-sc0000336-1575043694:98581..98755Clytia hemisphaericaexon
TCONS_00019797-exon-sc0000336-1575043694:98260..98446TCONS_00019797-exon-sc0000336-1575043694:98260..98446Clytia hemisphaericaexon
TCONS_00019797-exon-sc0000336-1575043694:97592..97947TCONS_00019797-exon-sc0000336-1575043694:97592..97947Clytia hemisphaericaexon
TCONS_00019797-exon-sc0000336-1575043694:96270..97394TCONS_00019797-exon-sc0000336-1575043694:96270..97394Clytia hemisphaericaexon
TCONS_00019797-exon-sc0000336-1510915933:98875..99054TCONS_00019797-exon-sc0000336-1510915933:98875..99054Clytia hemisphaericaexon
TCONS_00019797-exon-sc0000336-1510915933:98581..98755TCONS_00019797-exon-sc0000336-1510915933:98581..98755Clytia hemisphaericaexon
TCONS_00019797-exon-sc0000336-1510915933:98260..98446TCONS_00019797-exon-sc0000336-1510915933:98260..98446Clytia hemisphaericaexon
TCONS_00019797-exon-sc0000336-1510915933:97592..97947TCONS_00019797-exon-sc0000336-1510915933:97592..97947Clytia hemisphaericaexon
TCONS_00019797-exon-sc0000336-1510915933:96270..97394TCONS_00019797-exon-sc0000336-1510915933:96270..97394Clytia hemisphaericaexon
TCONS_00019797-exon-sc0000336-1491911889:98875..99054TCONS_00019797-exon-sc0000336-1491911889:98875..99054Clytia hemisphaericaexon
TCONS_00019797-exon-sc0000336-1491911889:98581..98755TCONS_00019797-exon-sc0000336-1491911889:98581..98755Clytia hemisphaericaexon
TCONS_00019797-exon-sc0000336-1491911889:98260..98446TCONS_00019797-exon-sc0000336-1491911889:98260..98446Clytia hemisphaericaexon
TCONS_00019797-exon-sc0000336-1491911889:97592..97947TCONS_00019797-exon-sc0000336-1491911889:97592..97947Clytia hemisphaericaexon
TCONS_00019797-exon-sc0000336-1491911889:96270..97394TCONS_00019797-exon-sc0000336-1491911889:96270..97394Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000336supercontigsc0000336:96270..99054 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
3.9532e-08	0	0	6.18369e-10	0	2.05025	0.0262301	4.10437	0.451048	0.632203	3.27555e-06	0	0	0.316417	0.392898	0	0.729943	0	0	0	0	3.71678e-08	2.17995e-08	0	0.862496	0	0	3.14943	1.0804e-07	1.04117e-09
Blast
[Close]
BLAST of TCONS_00019797 vs. Swiss-Prot (Human)
Match: ITFG2 (KICSTOR complex protein ITFG2 OS=Homo sapiens GN=ITFG2 PE=1 SV=1)

HSP 1 Score: 171.785 bits (434), Expect = 1.715e-59
Identity = 109/365 (29.86%), Postives = 178/365 (48.77%), Query Frame = 2 
Query:  395 EEMRLVHKEHLPPNAKVAILEDVDNDGVAELIIGYTDRYVRIYKWTVQGDPLDDVEKKLSKQNTEETDXXXXXXXXXXXXXEPKHLSPAPRQKSADTAEEGTINNNNSTPYHPVGSFVLLKQFSLIGQIGSLAVCTTVEGLNQLIVSQPNGGYCILGQYDEDGFTENISTPTSVEAPSPSNQDSYPIFYPITAYGNRSFQQQHINTEIIGGIRRQKG----ATGVIGLATHDGYFIILDNTYFSGQNPVKNSSKNNWFAMSKVDVTNDGDDEIVLCDLNGMTYIIDKERNIVSYNFNENVAAFCAGYYGNK-GRSTPCLCYVTLSGKIHLYYDVWIDAIKVRCVHAALIEKIKRKPELHYLLELL 1474
            EE R V K+H+P N KV ++ D+D DG  EL++GYTDR VR ++W   G+                                P+HL+                           G  V LK++ L GQ+ SL+V     GL +L+VSQP   Y IL       + ++  +P + E P+  ++++      +    +     ++++T +IG I++  G     +G+  L T DG   +++    + +        +  FA+ K+DVT +G +E+V C  +G TYIID  R +V +  +EN+ AFCAG Y  K GR++PCL YVT + KI++Y++V ++    R     L++ ++ KPE H LL+ L
Sbjct:  113 EEQRPVFKQHIPANTKVMLISDIDGDGCRELVVGYTDRVVRAFRWEELGE-------------------------------GPEHLT---------------------------GQLVSLKKWMLEGQVDSLSVTLGPLGLPELMVSQPGCAYAILLCT----WKKDTGSPPASEGPTDGSRETPAARDVVLHQTSGRIHNKNVSTHLIGNIKQGHGTESSGSGLFALCTLDGTLKLMEEMEEADKLLWSVQVDHQLFALEKLDVTGNGHEEVVACAWDGQTYIIDHNRTVVRFQVDENIRAFCAGLYACKEGRNSPCLVYVTFNQKIYVYWEVQLE----RMESTNLVKLLETKPEYHSLLQEL 411

HSP 2 Score: 77.7962 bits (190), Expect = 1.715e-59
Identity = 43/101 (42.57%), Postives = 62/101 (61.39%), Query Frame = 3 
Query:   33 MRSISLVNKLEVDYKGSLFKSAICLVDIDEDGLNELCVGFTNGELHAYKGLDTTKPWKLSKGLGSLVVLCGGHVRSKDETLLCALDSEGRCNLFDVKEEHV 335
            MRS+S V ++ +++ GSLF  AICL D+D D LNEL VG T+G++  YK  D ++PW      G L  +  G V +K + LL A+ +EG  +LFD+    V
Sbjct:    1 MRSVSYVQRVALEFSGSLFPHAICLGDVDNDTLNELVVGDTSGKVSVYKN-DDSRPWLTCSCQGMLTCVGVGDVCNKGKNLLVAVSAEGWFHLFDLTPAKV 100
The following BLAST results are available for this feature:
BLAST of TCONS_00019797 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
ITFG21.715e-5929.86KICSTOR complex protein ITFG2 OS=Homo sapiens GN=I... [more]
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