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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00019796 ID=TCONS_00019796|Name=TCONS_00019796|organism=Clytia hemisphaerica|type=transcript|length=2331bpRun BLAST on NCBI protein sequence of TCONS_00019796-protein >TCONS_00019796-protein ID=TCONS_00019796-protein|Name=TCONS_00019796-protein|organism=Clytia hemisphaerica|type=polypeptide|length=549bp LASKAIKSQNNQTKQLPHTTNKLLIRMVGSEIRSKIVGSFKLNGLSLRSERun BLAST on NCBI transcript from alignment at sc0000336:43827..74347- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00019796 ID=TCONS_00019796|Name=TCONS_00019796|organism=Clytia hemisphaerica|type=transcript|length=30521bp|location=Sequence derived from alignment at sc0000336:43827..74347- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000336:43827..74347- >TCONS_00019796 ID=TCONS_00019796|Name=TCONS_00019796|organism=Clytia hemisphaerica|type=CDS|length=33000bp|location=Sequence derived from alignment at sc0000336:43827..74347- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00019796 vs. Swiss-Prot (Human)
Match: DPOE2 (DNA polymerase epsilon subunit 2 OS=Homo sapiens GN=POLE2 PE=1 SV=2) HSP 1 Score: 568.926 bits (1465), Expect = 0.000e+0 Identity = 276/526 (52.47%), Postives = 371/526 (70.53%), Query Frame = 3
Query: 81 MVGSEIRSKIVGSFKLNGLSLRSEASKFLVETLSEVETDELETWIEKIIELVQKQPLNSNFIDRDVVEIAVNECAQNVDTEGEDAFNVIDVYKVPHYVYSNERKKFV----LSKKKATLFSSPDEKVDMFVEQYNILYQRALHHELFXXXXXXXXXXXXXXXFTLKPIEHXXXXXXXXXDIIVLGMLSNLKEGKYFLEDPTGAVELDLSSTIYHEGIFTECTFVLAEGKYDDQIFHVTALGFPPPEPANISRNLFGNINFFGGPSPICVANSDKMKALEDDDGYQSHMFVFLSDLWLDQPKVMSKFKVLLSGYSQMPPTAFIICGNFLSQPYGSKHQTVLKNGFKELANLINMFPSIIESSRFLFVPGPQDPGPGNILPRPPISKFITEEIRNKIPFCDFLSNPCRLQYCSQEFTIFREDLINKMCRNSIHLPDDLTNIPNHFVKTIASQAHLCPLPLATRPRYWAYDYVMRLYPLPDTVICADKFDAYNISHCGTNFVNPGSFARNEYCFKVYWPANKETEDCKI 1646
M +RS+ + +FKL GL LR EA K+L E L + ELE +EKII V+KQPL+SN I+R VVE AV EC+Q+VD E FN+I + +P +VY++ERKKF+ + LF +P +K +MF E+Y IL+QR HELF+ + + + +KF LK IE LLGS++ +GD IVLGM++ LKEGK+FLEDPTG V+LDLS +H G++TE FVLAEG ++DQ+FHV A GFPP EP++ +R +GNINFFGGPS V S K+K LE+++ + MFVFLSD+WLDQ +V+ K +++ +GYS PPT FI+CGNF S PYG LK+ K LA++I +P I +SSRF+FVPGP+DPG G+ILPRPP+++ IT E R ++PF F +NPCR+QYC+QE T+FREDL+NKMCRN + P IPNHFVKTI SQ HL PLPL P YWAYDY +R+YP+PD ++ ADK+D + ++ +NPGSF R+ + FKV++P+NK ED K+
Sbjct: 1 MAPERLRSRALSAFKLRGLLLRGEAIKYLTEALQSISELELEDKLEKIINAVEKQPLSSNMIERSVVEAAVQECSQSVDETIEHVFNIIGAFDIPRFVYNSERKKFLPLLMTNHPAPNLFGTPRDKAEMFRERYTILHQRTHRHELFTPPVIGSHPDESGSKFQLKTIETLLGSTTKIGDAIVLGMITQLKEGKFFLEDPTGTVQLDLSKAQFHSGLYTEACFVLAEGWFEDQVFHVNAFGFPPTEPSSTTRAYYGNINFFGGPSNTSVKTSAKLKQLEEEN--KDAMFVFLSDVWLDQVEVLEKLRIMFAGYSPAPPTCFILCGNFSSAPYGKNQVQALKDSLKTLADIICEYPDIHQSSRFVFVPGPEDPGFGSILPRPPLAESITNEFRQRVPFSVFTTNPCRIQYCTQEITVFREDLVNKMCRNCVRFPSSNLAIPNHFVKTILSQGHLTPLPLYVCPVYWAYDYALRVYPVPDLLVIADKYDPFTTTNTECLCINPGSFPRSGFSFKVFYPSNKTVEDSKL 524 The following BLAST results are available for this feature:
BLAST of TCONS_00019796 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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