|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00019794 ID=TCONS_00019794|Name=TCONS_00019794|organism=Clytia hemisphaerica|type=transcript|length=785bp
GTTTAGATGGACAGCAGGGCTTGGTATGCCATGAAACAGCACGAAAGAGA
CGATCATGTGGCGCGATTTCGAAAGTACATACCAAAAACGAAAGATTTGT
ACAAAATATCTGGAGCGGTTGGTAGAAAGCCAGGCAGCCAGAAAAGCAGA
AAACGAAATCTTAAAGAACCGGTCTTTGTTGAAGAGCGTGTATTGCCAAG
TAAAATACCAAAGCTTTGTGTCAAGAAAACTGGTGACCAGTTCTCTTCac
aggtgttgaaagacttcgATTTGTCTAAAATAAACCCGAAAGCCAAGGAA
GAGAAAGCCATGGTTTTGCGTCTAAAAAGCATGCACGTAAATGTTTCCAG
TTGCAATGCAGCAGAATGCATACGCAAAATTAGTAATGAAAAGGATTTGC
TGATCATTCAAACATCTGGAGTGTCCGTCTGGACTGACAGCAAAAGGAAG
GTACGCTCACGAACTGGAACCGTGTATGTTCACTTCAAGGAAGAATGTCT
ACGACAAGTTTTTCCAGATTTCTCCTACGAAAAAATTATAGTCGACGAAG
AAACTAGGAAGAAACTTCCAGATAATGCTATCGNTCTCCTACGAAAAAAT
TATAGTCGACGAAGAAACTAGGAAAAAACTTCCAGATAATGCTATCGCGA
GACTTGCAAGTTTCGGTGTTAACGTGATTTGATGTATTCGGAACTTTTTT
GATAATAGTTTGTACTTTGTATTTCCattgatatttctttttctCCTCTC
CCACttgaacgttttttttttcattctcctCAGAG Run BLAST on NCBI protein sequence of TCONS_00019794-protein >TCONS_00019794-protein ID=TCONS_00019794-protein|Name=TCONS_00019794-protein|organism=Clytia hemisphaerica|type=polypeptide|length=204bp
MDSRAWYAMKQHERDDHVARFRKYIPKTKDLYKISGAVGRKPGSQKSRKR
NLKEPVFVEERVLPSKIPKLCVKKTGDQFSSQVLKDFDLSKINPKAKEEK
AMVLRLKSMHVNVSSCNAAECIRKISNEKDLLIIQTSGVSVWTDSKRKVR
SRTGTVYVHFKEECLRQVFPDFSYEKIIVDEETRKKLPDNAIXLLRKNYS
RRRN Run BLAST on NCBI transcript from alignment at sc0000336:327870..328884+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00019794 ID=TCONS_00019794|Name=TCONS_00019794|organism=Clytia hemisphaerica|type=transcript|length=1015bp|location=Sequence derived from alignment at sc0000336:327870..328884+ (Clytia hemisphaerica)
GTTTAGATGGACAGCAGGGCTTGGTATGCCATGAAACAGCACGAAAGAGA
CGATCATGTGGCGCGATTTCGAAAGTACATACCAAAAACGAAAGATTTGT
ACAAAATATCTGGAGCGGTTGGTAGAAAGCCAGGCAGCCAGAAAAGCAGA
AAACGAAATCTTAAAGAACCGGTCTTTGTTGAAGAGCGTGTATTGCCAAG
TAAAATACCAAAGCTTTGTGTCAAGAAAACTGGTGACCAGTTCTCTTCac
aggtgttgaaagacttcgATTTGTCTAAAATAAACCCGAAAGCCAAGGAA
GAGAAAGCCATGGTTTTGCGTCTAAAAAGCATGCACGTAAATGTTTCCAG
gtaattcatttttaattttataggAATGATATTGTCTCTCAAAAAATCGA
CATTTCGAGAATGACAATTATAATAAAATCCCAccagaaattgatttttc
tccTATTcatatcattttcatttcaagtttcgaaaaatcttcaacttctt
tttttttttttatgatattgCACTTTTAACTCTTTTTAACCAAGGTAAAC
TAAACTATTTTTtacttcttacttttttagTTGCAATGCAGCAGAATGCA
TACGCAAAATTAGTAATGAAAAGGATTTGCTGATCATTCAAACATCTGGA
GTGTCCGTCTGGACTGACAGCAAAAGGAAGGTACGCTCACGAACTGGAAC
CGTGTATGTTCACTTCAAGGAAGAATGTCTACGACAAGTTTTTCCAGATT
TCTCCTACGAAAAAATTATAGTCGACGAAGAAACTAGGAAGAAACTTCCA
GATAATGCTATCGNTCTCCTACGAAAAAATTATAGTCGACGAAGAAACTA
GGAAAAAACTTCCAGATAATGCTATCGCGAGACTTGCAAGTTTCGGTGTT
AACGTGATTTGATGTATTCGGAACTTTTTTGATAATAGTTTGTACTTTGT
ATTTCCattgatatttctttttctCCTCTCCCACttgaacgttttttttt
tcattctcctCAGAG Coding sequence (CDS) from alignment at sc0000336:327870..328884+ >TCONS_00019794 ID=TCONS_00019794|Name=TCONS_00019794|organism=Clytia hemisphaerica|type=CDS|length=1230bp|location=Sequence derived from alignment at sc0000336:327870..328884+ (Clytia hemisphaerica)
ATGGACAGCAGGGCTTGGTATGCCATGAAACAGCACGAAAGAGACGATCA
TGTGGCGCGATTTCGAAAGTACATACCAAAAACGAAAGATTTGTACAAAA
TATCTGGAGCGGTTGGTAGAAAGCCAGGCAGCCAGAAAAGCAGAAAACGA
AATCTTAAAGAACCGGTCTTTGTTGAAGAGCGTGTATTGCCAAGTAAAAT
ACCAAAGCTTTGTGTCAAGAAAACTGGTGACCAGTTCTCTTCacaggtgt
tgaaagacttcgATTTGTCTAAAATAAACCCGAAAGCCAAGGAAGAGAAA
GCCATGGTTTTGCGTCTAAAAAGCATGCACGTAAATGTTTCCAGTTGCAA
TGCAGCAGAATGCATACGCAAAATTAGTAATGAAAAGGATTTGCTGATCA
TTCAAACATCTGGAGTGTCCGTCTGGACTGACAGCAAAAGGAAGGTACGC
TCACGAACTGGAACCGTGTATGTTCACTTCAAGGAAGAATGTCTACGACA
AGTTTTTCCAGATTTCTCCTACGAAAAAATTATAGTCGACGAAGAAACTA
GGAAGAAACTTCCAGATAATGCTATCGNTCTCCTACGAAAAAATTATAGT
CGACGAAGAAACTAGATGGACAGCAGGGCTTGGTATGCCATGAAACAGCA
CGAAAGAGACGATCATGTGGCGCGATTTCGAAAGTACATACCAAAAACGA
AAGATTTGTACAAAATATCTGGAGCGGTTGGTAGAAAGCCAGGCAGCCAG
AAAAGCAGAAAACGAAATCTTAAAGAACCGGTCTTTGTTGAAGAGCGTGT
ATTGCCAAGTAAAATACCAAAGCTTTGTGTCAAGAAAACTGGTGACCAGT
TCTCTTCacaggtgttgaaagacttcgATTTGTCTAAAATAAACCCGAAA
GCCAAGGAAGAGAAAGCCATGGTTTTGCGTCTAAAAAGCATGCACGTAAA
TGTTTCCAGTTGCAATGCAGCAGAATGCATACGCAAAATTAGTAATGAAA
AGGATTTGCTGATCATTCAAACATCTGGAGTGTCCGTCTGGACTGACAGC
AAAAGGAAGGTACGCTCACGAACTGGAACCGTGTATGTTCACTTCAAGGA
AGAATGTCTACGACAAGTTTTTCCAGATTTCTCCTACGAAAAAATTATAG
TCGACGAAGAAACTAGGAAGAAACTTCCAGATAATGCTATCGNTCTCCTA
CGAAAAAATTATAGTCGACGAAGAAACTAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00019794-exon-sc0000336-1491911889:327870..328219 | TCONS_00019794-exon-sc0000336-1491911889:327870..328219 | Clytia hemisphaerica | exon |
| TCONS_00019794-exon-sc0000336-1510915933:327870..328219 | TCONS_00019794-exon-sc0000336-1510915933:327870..328219 | Clytia hemisphaerica | exon |
| TCONS_00019794-exon-sc0000336-1575043694:327870..328219 | TCONS_00019794-exon-sc0000336-1575043694:327870..328219 | Clytia hemisphaerica | exon |
| TCONS_00019794-exon-sc0000336-1491911889:328450..328884 | TCONS_00019794-exon-sc0000336-1491911889:328450..328884 | Clytia hemisphaerica | exon |
| TCONS_00019794-exon-sc0000336-1510915933:328450..328884 | TCONS_00019794-exon-sc0000336-1510915933:328450..328884 | Clytia hemisphaerica | exon |
| TCONS_00019794-exon-sc0000336-1575043694:328450..328884 | TCONS_00019794-exon-sc0000336-1575043694:328450..328884 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000336 | supercontig | sc0000336:327870..328884 + |
Blast
The following BLAST results are available for this feature:
|
