TCONS_00019775 (transcript) - C. hemisphaerica

Overview
NameTCONS_00019775
Unique NameTCONS_00019775
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length579

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00019775 ID=TCONS_00019775|Name=TCONS_00019775|organism=Clytia hemisphaerica|type=transcript|length=579bp
AATTACTGCAATGGATCAGATCCTTCCTTACCGGTAGGACCCAACAAGTA
TCTGTTGACTACATCCTCTCCAAAAAAGCAGAAGTCATTTCTGGCGTCCC
CCAAGGATCAGTTCTTGGTCCACTTCTCTTCTTGATAATGATCCAAGATA
TTGACACTAACATCCTACATTCATTTCTATCTTCATTTGCTGAGGATACA
CGTTTCATGAAGGAGATCTCTAATAACACTGATGTTCAATTTCTACAAAA
CGACCTTGATGTGGTGTATCAATGGAAATCATTAAACAACATGCAGCTCA
ATGGCTTGAAGTTTGAACATCTTAAAtacagaaaaaatgaagaactaaAA
GAAAACTCAAGTTACCTCTCAAACACTGGTGGCTCTCCTATTGAAACCAA
GATGGACGTGAAGGATTTAGGAGTCACTCTGGATGTGAACATGACAAACA
GCAAACACATCACAAACCAGATCGAGAAAGTCAAAAGTATCATTGCTTGG
ATCCATCGAACGTTCAAAACAAGAGATTGTCAAGTAATGCTAACTCTTTG
GAAGTCACTGGTACTACCACACATTGACT
Run BLAST on NCBI

protein sequence of TCONS_00019775-protein

>TCONS_00019775-protein ID=TCONS_00019775-protein|Name=TCONS_00019775-protein|organism=Clytia hemisphaerica|type=polypeptide|length=192bp
LLQWIRSFLTGRTQQVSVDYILSKKAEVISGVPQGSVLGPLLFLIMIQDI
DTNILHSFLSSFAEDTRFMKEISNNTDVQFLQNDLDVVYQWKSLNNMQLN
GLKFEHLKYRKNEELKENSSYLSNTGGSPIETKMDVKDLGVTLDVNMTNS
KHITNQIEKVKSIIAWIHRTFKTRDCQVMLTLWKSLVLPHID
Run BLAST on NCBI

transcript from alignment at sc0000335:319800..320378

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00019775 ID=TCONS_00019775|Name=TCONS_00019775|organism=Clytia hemisphaerica|type=transcript|length=579bp|location=Sequence derived from alignment at sc0000335:319800..320378 (Clytia hemisphaerica)
AGTCAATGTGTGGTAGTACCAGTGACTTCCAAAGAGTTAGCATTACTTGA
CAATCTCTTGTTTTGAACGTTCGATGGATCCAAGCAATGATACTTTTGAC
TTTCTCGATCTGGTTTGTGATGTGTTTGCTGTTTGTCATGTTCACATCCA
GAGTGACTCCTAAATCCTTCACGTCCATCTTGGTTTCAATAGGAGAGCCA
CCAGTGTTTGAGAGGTAACTTGAGTTTTCTTttagttcttcattttttct
gtaTTTAAGATGTTCAAACTTCAAGCCATTGAGCTGCATGTTGTTTAATG
ATTTCCATTGATACACCACATCAAGGTCGTTTTGTAGAAATTGAACATCA
GTGTTATTAGAGATCTCCTTCATGAAACGTGTATCCTCAGCAAATGAAGA
TAGAAATGAATGTAGGATGTTAGTGTCAATATCTTGGATCATTATCAAGA
AGAGAAGTGGACCAAGAACTGATCCTTGGGGGACGCCAGAAATGACTTCT
GCTTTTTTGGAGAGGATGTAGTCAACAGATACTTGTTGGGTCCTACCGGT
AAGGAAGGATCTGATCCATTGCAGTAATT

Coding sequence (CDS) from alignment at sc0000335:319800..320378

>TCONS_00019775 ID=TCONS_00019775|Name=TCONS_00019775|organism=Clytia hemisphaerica|type=CDS|length=576bp|location=Sequence derived from alignment at sc0000335:319800..320378 (Clytia hemisphaerica)
GTCAATGTGTGGTAGTACCAGTGACTTCCAAAGAGTTAGCATTACTTGAC
AATCTCTTGTTTTGAACGTTCGATGGATCCAAGCAATGATACTTTTGACT
TTCTCGATCTGGTTTGTGATGTGTTTGCTGTTTGTCATGTTCACATCCAG
AGTGACTCCTAAATCCTTCACGTCCATCTTGGTTTCAATAGGAGAGCCAC
CAGTGTTTGAGAGGTAACTTGAGTTTTCTTttagttcttcattttttctg
taTTTAAGATGTTCAAACTTCAAGCCATTGAGCTGCATGTTGTTTAATGA
TTTCCATTGATACACCACATCAAGGTCGTTTTGTAGAAATTGAACATCAG
TGTTATTAGAGATCTCCTTCATGAAACGTGTATCCTCAGCAAATGAAGAT
AGAAATGAATGTAGGATGTTAGTGTCAATATCTTGGATCATTATCAAGAA
GAGAAGTGGACCAAGAACTGATCCTTGGGGGACGCCAGAAATGACTTCTG
CTTTTTTGGAGAGGATGTAGTCAACAGATACTTGTTGGGTCCTACCGGTA
AGGAAGGATCTGATCCATTGCAGTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_011122XLOC_011122Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00019775-proteinTCONS_00019775-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00019775-exon-sc0000335-1491911889:319800..320378TCONS_00019775-exon-sc0000335-1491911889:319800..320378Clytia hemisphaericaexon
TCONS_00019775-exon-sc0000335-1510915933:319800..320378TCONS_00019775-exon-sc0000335-1510915933:319800..320378Clytia hemisphaericaexon
TCONS_00019775-exon-sc0000335-1575043694:319800..320378TCONS_00019775-exon-sc0000335-1575043694:319800..320378Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000335supercontigsc0000335:319800..320378 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.21836	1.71651	2.68179	0.948177	0.298774	0.494105	0	0.297223	0.801412	0.7855	1.41629	0.657938	0.537989	0.577895	0.335695	0.337709	0.270037	0.146766	0.39663	0.0951035	0.343803	0	0	0	0.410223	0.506221	0.94044	0.802592	0.477563	0
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR000477RT_dom
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00019775 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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