TCONS_00019772 (transcript) - C. hemisphaerica

Overview
NameTCONS_00019772
Unique NameTCONS_00019772
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length247

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00019772 ID=TCONS_00019772|Name=TCONS_00019772|organism=Clytia hemisphaerica|type=transcript|length=247bp
ATTAGTTCTATTTTATGTTTGCCTCAGTTATTTTTCATACTGTGATATGC
CTCGTGTTTTTCCTTACTATCATTTACTCATGCCTTTCCAACATTGGAAA
GTACGTACACCTCTCAATCAAAACGAGATCTAACATCGTAATTTCTACTT
TCATAGCGAATTTAACTCCTCAttcaaataattaattttcaagtgcTTTT
TCATAGCCAAATTCAATACGTTCGTAAACTATGCCAGCATGCCTTTN
Run BLAST on NCBI

transcript from alignment at sc0000335:281417..281663

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00019772 ID=TCONS_00019772|Name=TCONS_00019772|organism=Clytia hemisphaerica|type=transcript|length=247bp|location=Sequence derived from alignment at sc0000335:281417..281663 (Clytia hemisphaerica)
NAAAGGCATGCTGGCATAGTTTACGAACGTATTGAATTTGGCTATGAAAA
AgcacttgaaaattaattatttgaaTGAGGAGTTAAATTCGCTATGAAAG
TAGAAATTACGATGTTAGATCTCGTTTTGATTGAGAGGTGTACGTACTTT
CCAATGTTGGAAAGGCATGAGTAAATGATAGTAAGGAAAAACACGAGGCA
TATCACAGTATGAAAAATAACTGAGGCAAACATAAAATAGAACTAAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_011119XLOC_011119Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00019772-exon-sc0000335-1491911889:281417..281663TCONS_00019772-exon-sc0000335-1491911889:281417..281663Clytia hemisphaericaexon
TCONS_00019772-exon-sc0000335-1510915933:281417..281663TCONS_00019772-exon-sc0000335-1510915933:281417..281663Clytia hemisphaericaexon
TCONS_00019772-exon-sc0000335-1575043694:281417..281663TCONS_00019772-exon-sc0000335-1575043694:281417..281663Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000335supercontigsc0000335:281417..281663 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.608	2.35208	3.64132	0	3.25272	0.85678	5.16835	5.80625	2.03255	1.67842	0	3.21276	2.67358	1.66592	0.913076	0.489935	0	1.85589	0.85467	1.7887	2.33206	4.54999	0	0	0.863219	2.31121	4.40978	1.17656	3.56951	0.909192
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00019772 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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