TCONS_00019770 (transcript) - C. hemisphaerica

Overview
NameTCONS_00019770
Unique NameTCONS_00019770
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length441

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00019770 ID=TCONS_00019770|Name=TCONS_00019770|organism=Clytia hemisphaerica|type=transcript|length=441bp
CTTGATGgcaatgaaaacttttttggaCGTaggtcaaatttcttttttat
cttcattgGACTTCCtgcaatctcaaaattattgaatttgataTGAATCA
GCTCTCCGTTATTGTCCGGTTTCTCATATAACCCGTTTAGAATAATCGGA
TTATCGGATAATTTGATATGAATTTTGAATTCCGATTCGGTTTCACCAGT
ATCCGTTCCCGGATAGAAATAACCATTATCTATATAGCATTCTCCATAGT
GTATGCTCTCATCAAATTTGACGTGGATTTTCAGTTTCAGCTTGTATCCT
GTCGACGTGGTGTCGGCGGTCGCTTCAAGAACGCTTAGAGATTTAGCGAA
CAGGCTAGCGGACGCTGAGACAAGTTCTATTCGATACCAATTACTATCAC
TTGATTTTAACCAATCGCGATAAACATTCTGCATTTCTTCT
Run BLAST on NCBI

protein sequence of TCONS_00019770-protein

>TCONS_00019770-protein ID=TCONS_00019770-protein|Name=TCONS_00019770-protein|organism=Clytia hemisphaerica|type=polypeptide|length=146bp
EEMQNVYRDWLKSSDSNWYRIELVSASASLFAKSLSVLEATADTTSTGYK
LKLKIHVKFDESIHYGECYIDNGYFYPGTDTGETESEFKIHIKLSDNPII
LNGLYEKPDNNGELIHIKFNNFEIAGSPMKIKKKFDLRPKKFSLPS
Run BLAST on NCBI

transcript from alignment at sc0000335:228013..228453

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00019770 ID=TCONS_00019770|Name=TCONS_00019770|organism=Clytia hemisphaerica|type=transcript|length=441bp|location=Sequence derived from alignment at sc0000335:228013..228453 (Clytia hemisphaerica)
AGAAGAAATGCAGAATGTTTATCGCGATTGGTTAAAATCAAGTGATAGTA
ATTGGTATCGAATAGAACTTGTCTCAGCGTCCGCTAGCCTGTTCGCTAAA
TCTCTAAGCGTTCTTGAAGCGACCGCCGACACCACGTCGACAGGATACAA
GCTGAAACTGAAAATCCACGTCAAATTTGATGAGAGCATACACTATGGAG
AATGCTATATAGATAATGGTTATTTCTATCCGGGAACGGATACTGGTGAA
ACCGAATCGGAATTCAAAATTCATATCAAATTATCCGATAATCCGATTAT
TCTAAACGGGTTATATGAGAAACCGGACAATAACGGAGAGCTGATTCAta
tcaaattcaataattttgagattgcaGGAAGTCcaatgaagataaaaaag
aaatttgacctACGtccaaaaaagttttcattgcCATCAAG

Coding sequence (CDS) from alignment at sc0000335:228013..228453

>TCONS_00019770 ID=TCONS_00019770|Name=TCONS_00019770|organism=Clytia hemisphaerica|type=CDS|length=438bp|location=Sequence derived from alignment at sc0000335:228013..228453 (Clytia hemisphaerica)
GAAGAAATGCAGAATGTTTATCGCGATTGGTTAAAATCAAGTGATAGTAA
TTGGTATCGAATAGAACTTGTCTCAGCGTCCGCTAGCCTGTTCGCTAAAT
CTCTAAGCGTTCTTGAAGCGACCGCCGACACCACGTCGACAGGATACAAG
CTGAAACTGAAAATCCACGTCAAATTTGATGAGAGCATACACTATGGAGA
ATGCTATATAGATAATGGTTATTTCTATCCGGGAACGGATACTGGTGAAA
CCGAATCGGAATTCAAAATTCATATCAAATTATCCGATAATCCGATTATT
CTAAACGGGTTATATGAGAAACCGGACAATAACGGAGAGCTGATTCAtat
caaattcaataattttgagattgcaGGAAGTCcaatgaagataaaaaaga
aatttgacctACGtccaaaaaagttttcattgcCATCA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_011117XLOC_011117Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00019770-proteinTCONS_00019770-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00019770-exon-sc0000335-1491911889:228013..228453TCONS_00019770-exon-sc0000335-1491911889:228013..228453Clytia hemisphaericaexon
TCONS_00019770-exon-sc0000335-1510915933:228013..228453TCONS_00019770-exon-sc0000335-1510915933:228013..228453Clytia hemisphaericaexon
TCONS_00019770-exon-sc0000335-1575043694:228013..228453TCONS_00019770-exon-sc0000335-1575043694:228013..228453Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000335supercontigsc0000335:228013..228453 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	0.393209	0	1.03091	0.638475	0.15493	0.407379	4.47494	1.90116	1.30251	1.39779	1.26277	1.88262	1.46303	3.74233	2.21779	1.29812	1.22736	1.27525	0.492554	2.05143	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00019770 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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