TCONS_00019769 (transcript) - C. hemisphaerica

Overview
NameTCONS_00019769
Unique NameTCONS_00019769
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1229

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00019769 ID=TCONS_00019769|Name=TCONS_00019769|organism=Clytia hemisphaerica|type=transcript|length=1229bp
TCCATAGTCAATTTTGAcaggaaaaatataaaaatagtaCGAGAAACCAC
AGGTTACCAAAGAAAATATCTCGAAAAACAACAGAACATACTTTAACTAT
AATAAGGAGATACCTACTTGGTGGATTTGAATCAAAGGAAGTATTCATTT
TCGGTTAAGGCCGCAGTTTCAGAATGTCTGTGGTTATCCTGATGCAATTA
GTATTAATGACATCTATTCATGGTGCATTTTACAATCTGGTCAGGCAAGA
TTTAGTCCTATCACAAACAGCTTACAAAGAAACTGCAGCAACGACCGAAC
AAATGTGTATCAGCGTATGTTCTTGTGACGATCAATGTTTTTCGTTTGCT
TTCGTCCCACATATTGGATGTATCTTCTATCGATCCATGTTCGCCGAGAC
ATACAAACCATACCCTCTTACGTGGAAACAAGGAGCTAAATTTTACTCCG
CATTTGTAAAAGACTGTTCCGATTTATACAAACTCGGTAAACGAGAAAAT
GGTGTATACGATGTACATATCCCTGGAGACGTTACTAGGCGACGAGTGTA
TTGTGATATGAGTGGTGGTTGGTTAGTTTTTCAACGTCGTTATGAAGGTA
GCCTCGATTTCATGAATCGTTCTATGTCTGAATGCAGATACGGATTTGGC
GACGCTGCTAAGGAGCATTGGCTTGGTCTGGAGTATGTTTTTTTActaac
aaaaatagaaaaatatgaaCTTCTGATTAAAGTTCTACAGCAAGATGGTA
AAAGTAAATGGAAGTCATTTTCTAACTTTTCCGTAAATGGTCACAAAGAT
AAATTTCGATTTTATTCTACTGGATCTTACAGCCCTATGGGTTTGGATTT
TGGCACCAATACAATGAGTGGATTCAAATTCACAACTTATGACATGGATG
GTGATCGGGAGAGAGATAAAAATTGTGCAAATGAGGGCGGTCCATGGTGG
TATAAGAAATGTACTCATAATTCCTTGAATGGAATTTATGGTAACCCACA
ATTATTAGACACCGTCAGTTTTTTTGATAATCCAATAATGGCTGAAAGCC
TCGTCATGATACGTCCTATGGGTTTCAAAGGCCCTGAAATTAGATGACTT
GTTTTGTTTGTATAGTTCTTTTAcagaatttttagtttttctgtttattt
tattttgtaccTACTATCCtactttttaaaggttttgtttttaaataaga
gtgatatcgtttgcttactcatcaatttt
Run BLAST on NCBI

protein sequence of TCONS_00019769-protein

>TCONS_00019769-protein ID=TCONS_00019769-protein|Name=TCONS_00019769-protein|organism=Clytia hemisphaerica|type=polypeptide|length=307bp
MSVVILMQLVLMTSIHGAFYNLVRQDLVLSQTAYKETAATTEQMCISVCS
CDDQCFSFAFVPHIGCIFYRSMFAETYKPYPLTWKQGAKFYSAFVKDCSD
LYKLGKRENGVYDVHIPGDVTRRRVYCDMSGGWLVFQRRYEGSLDFMNRS
MSECRYGFGDAAKEHWLGLEYVFLLTKIEKYELLIKVLQQDGKSKWKSFS
NFSVNGHKDKFRFYSTGSYSPMGLDFGTNTMSGFKFTTYDMDGDRERDKN
CANEGGPWWYKKCTHNSLNGIYGNPQLLDTVSFFDNPIMAESLVMIRPMG
FKGPEIR
Run BLAST on NCBI

transcript from alignment at sc0000335:209911..211139

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00019769 ID=TCONS_00019769|Name=TCONS_00019769|organism=Clytia hemisphaerica|type=transcript|length=1229bp|location=Sequence derived from alignment at sc0000335:209911..211139 (Clytia hemisphaerica)
aaaattgatgagtaagcaaacgatatcactcttatttaaaaacaaaacct
ttaaaaagtaGGATAGTAggtacaaaataaaataaacagaaaaactaaaa
attctgTAAAAGAACTATACAAACAAAACAAGTCATCTAATTTCAGGGCC
TTTGAAACCCATAGGACGTATCATGACGAGGCTTTCAGCCATTATTGGAT
TATCAAAAAAACTGACGGTGTCTAATAATTGTGGGTTACCATAAATTCCA
TTCAAGGAATTATGAGTACATTTCTTATACCACCATGGACCGCCCTCATT
TGCACAATTTTTATCTCTCTCCCGATCACCATCCATGTCATAAGTTGTGA
ATTTGAATCCACTCATTGTATTGGTGCCAAAATCCAAACCCATAGGGCTG
TAAGATCCAGTAGAATAAAATCGAAATTTATCTTTGTGACCATTTACGGA
AAAGTTAGAAAATGACTTCCATTTACTTTTACCATCTTGCTGTAGAACTT
TAATCAGAAGttcatatttttctatttttgttagTAAAAAAACATACTCC
AGACCAAGCCAATGCTCCTTAGCAGCGTCGCCAAATCCGTATCTGCATTC
AGACATAGAACGATTCATGAAATCGAGGCTACCTTCATAACGACGTTGAA
AAACTAACCAACCACCACTCATATCACAATACACTCGTCGCCTAGTAACG
TCTCCAGGGATATGTACATCGTATACACCATTTTCTCGTTTACCGAGTTT
GTATAAATCGGAACAGTCTTTTACAAATGCGGAGTAAAATTTAGCTCCTT
GTTTCCACGTAAGAGGGTATGGTTTGTATGTCTCGGCGAACATGGATCGA
TAGAAGATACATCCAATATGTGGGACGAAAGCAAACGAAAAACATTGATC
GTCACAAGAACATACGCTGATACACATTTGTTCGGTCGTTGCTGCAGTTT
CTTTGTAAGCTGTTTGTGATAGGACTAAATCTTGCCTGACCAGATTGTAA
AATGCACCATGAATAGATGTCATTAATACTAATTGCATCAGGATAACCAC
AGACATTCTGAAACTGCGGCCTTAACCGAAAATGAATACTTCCTTTGATT
CAAATCCACCAAGTAGGTATCTCCTTATTATAGTTAAAGTATGTTCTGTT
GTTTTTCGAGATATTTTCTTTGGTAACCTGTGGTTTCTCGtactattttt
atatttttcctgTCAAAATTGACTATGGA

Coding sequence (CDS) from alignment at sc0000335:209911..211139

>TCONS_00019769 ID=TCONS_00019769|Name=TCONS_00019769|organism=Clytia hemisphaerica|type=CDS|length=924bp|location=Sequence derived from alignment at sc0000335:209911..211139 (Clytia hemisphaerica)
TCATCTAATTTCAGGGCCTTTGAAACCCATAGGACGTATCATGACGAGGC
TTTCAGCCATTATTGGATTATCAAAAAAACTGACGGTGTCTAATAATTGT
GGGTTACCATAAATTCCATTCAAGGAATTATGAGTACATTTCTTATACCA
CCATGGACCGCCCTCATTTGCACAATTTTTATCTCTCTCCCGATCACCAT
CCATGTCATAAGTTGTGAATTTGAATCCACTCATTGTATTGGTGCCAAAA
TCCAAACCCATAGGGCTGTAAGATCCAGTAGAATAAAATCGAAATTTATC
TTTGTGACCATTTACGGAAAAGTTAGAAAATGACTTCCATTTACTTTTAC
CATCTTGCTGTAGAACTTTAATCAGAAGttcatatttttctatttttgtt
agTAAAAAAACATACTCCAGACCAAGCCAATGCTCCTTAGCAGCGTCGCC
AAATCCGTATCTGCATTCAGACATAGAACGATTCATGAAATCGAGGCTAC
CTTCATAACGACGTTGAAAAACTAACCAACCACCACTCATATCACAATAC
ACTCGTCGCCTAGTAACGTCTCCAGGGATATGTACATCGTATACACCATT
TTCTCGTTTACCGAGTTTGTATAAATCGGAACAGTCTTTTACAAATGCGG
AGTAAAATTTAGCTCCTTGTTTCCACGTAAGAGGGTATGGTTTGTATGTC
TCGGCGAACATGGATCGATAGAAGATACATCCAATATGTGGGACGAAAGC
AAACGAAAAACATTGATCGTCACAAGAACATACGCTGATACACATTTGTT
CGGTCGTTGCTGCAGTTTCTTTGTAAGCTGTTTGTGATAGGACTAAATCT
TGCCTGACCAGATTGTAAAATGCACCATGAATAGATGTCATTAATACTAA
TTGCATCAGGATAACCACAGACAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_011116XLOC_011116Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00019769-proteinTCONS_00019769-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00019769-exon-sc0000335-1491911889:209911..211139TCONS_00019769-exon-sc0000335-1491911889:209911..211139Clytia hemisphaericaexon
TCONS_00019769-exon-sc0000335-1510915933:209911..211139TCONS_00019769-exon-sc0000335-1510915933:209911..211139Clytia hemisphaericaexon
TCONS_00019769-exon-sc0000335-1575043694:209911..211139TCONS_00019769-exon-sc0000335-1575043694:209911..211139Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000335supercontigsc0000335:209911..211139 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.279399	0.15035	0.434864	0.0779549	0	0	0.044757	0	0.0293358	0.0726525	0.141277	0.0695959	0.695531	0.0962996	0.0198548	0.0427076	0.470757	0.643151	1.22381	1.51129	2.40859	1.99268	0.686424	0.853609	0.784488	0.900054	0	0	0	0
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR002181Fibrinogen_a/b/g_C_dom
IPR014715Fibrinogen_a/b/g_C_2
IPR014716Fibrinogen_a/b/g_C_1
Blast
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BLAST of TCONS_00019769 vs. Swiss-Prot (Human)
Match: ANGL4 (Angiopoietin-related protein 4 OS=Homo sapiens GN=ANGPTL4 PE=1 SV=2)

HSP 1 Score: 113.235 bits (282), Expect = 1.004e-27
Identity = 70/187 (37.43%), Postives = 104/187 (55.61%), Query Frame = 3 
Query:  453 FVKDCSDLYKLGKRENGVYDVHIPGDVTRRRVYCDMS--GGWLVFQRRYEGSLDFMNRSMSECRYGFGDAAKEHWLGLEYVFLLTKIEKYELLIKVLQQDGKSKWKSFSNFSVN-GHKDKFRFYSTGSYSPMGLDFGTNTM--SGF--KFTTYDMDGDRERDKNCANE-GGPWWYKKCTHNSLNGIY 989
              +DC +L+++G+R++G++++  P       V C M+  GGW V QRR++GS+DF NR     + GFGD   E WLGLE V  +T      L +++   DG ++      FSV+ G +D    YS    +P+    G  T+  SG    F+T+D D D  RDKNCA    G WW+  C+H++LNG Y
Sbjct:  184 LPRDCQELFQVGERQSGLFEIQ-PQGSPPFLVNCKMTSDGGWTVIQRRHDGSVDF-NRPWEAYKAGFGDPHGEFWLGLEKVHSITGDRNSRLAVQLRDWDGNAE---LLQFSVHLGGEDT--AYSLQLTAPVAGQLGATTVPPSGLSVPFSTWDQDHDLRRDKNCAKSLSGGWWFGTCSHSNLNGQY 363
The following BLAST results are available for this feature:
BLAST of TCONS_00019769 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
ANGL41.004e-2737.43Angiopoietin-related protein 4 OS=Homo sapiens GN=... [more]
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