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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00019733 ID=TCONS_00019733|Name=TCONS_00019733|organism=Clytia hemisphaerica|type=transcript|length=915bp
TTAGAAAGTAAGGTACCAAAAATCTCTTTCGTGTAGAAGCAAATCAGTAG
CTGAACTTCGCATACATTGTCACCAACAATATGAAGTTTTTCGTCTTATT
CATCGCAATTTTAATCCATCTACACCAGTGTCTTGGTGATGATGCTGATT
TTACCAGTCAGAACTTTAGAATGGTTCTTAATTACATGAAGGATCTTGAT
AACAGTAAACCTCTTTATGTGGACTATGTGAAAACGTTTAAAACACATCA
ACACTCTATTGGATATGTTGGCTATGATTCTAAACACAAGAATATCGTTG
TCGCTTTCGCTGGTTCCCAAACATTACTCAACTGGCTAAACAATCTCAAT
TTGCAATTGGTTCCATACTCTGTGTGTAGCAAATGCCAAGTTCATCCAGG
CTTTATGAGAACATACACATCCGCAAAGAAAATGATCTTCGAGCAAGTCA
AAATGCTGGATGCAAAATATCCAGGATCTAAGATCTACGTCACTGGCTAC
TCACTAGGCGCTGCTCAAGCCGTCTACTGTGCTTTGGAACTCAACCTAGC
TGGCTATGACACTGATCTTTTAACCTTTGCATCACCTCGGCCTGGAAATA
AAGCGTTTGCTGACTTCGTTAACAAGAACTTAGGACGGAACAATTATCGG
GTGACTTATGCTGCTGATACCATAAACGTCATTCCTGGGAAACCATATGG
ATATTACCACGTCGGAACTGAAGTCAACTTCAAAAGATGGGGAGGTTACC
AGGTCGTTCTTCCACGTTTCTCAGACAAGTATCATCCTCGCCCTTACAAT
ATATTTGATCATTTTCCGagcaattataaaaaattaagaacagaatAATG
GTTTTGTATTGTTGCAATCTCTAAGAAATTTCAAACAGAAAAAATCTCAG
ATTCGTTGAAAAATG Run BLAST on NCBI protein sequence of TCONS_00019733-protein >TCONS_00019733-protein ID=TCONS_00019733-protein|Name=TCONS_00019733-protein|organism=Clytia hemisphaerica|type=polypeptide|length=255bp
MKFFVLFIAILIHLHQCLGDDADFTSQNFRMVLNYMKDLDNSKPLYVDYV
KTFKTHQHSIGYVGYDSKHKNIVVAFAGSQTLLNWLNNLNLQLVPYSVCS
KCQVHPGFMRTYTSAKKMIFEQVKMLDAKYPGSKIYVTGYSLGAAQAVYC
ALELNLAGYDTDLLTFASPRPGNKAFADFVNKNLGRNNYRVTYAADTINV
IPGKPYGYYHVGTEVNFKRWGGYQVVLPRFSDKYHPRPYNIFDHFPSNYK
KLRTE Run BLAST on NCBI transcript from alignment at sc0000335:232010..235180+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00019733 ID=TCONS_00019733|Name=TCONS_00019733|organism=Clytia hemisphaerica|type=transcript|length=3171bp|location=Sequence derived from alignment at sc0000335:232010..235180+ (Clytia hemisphaerica)
TTAGAAAGTAAGGTACCAAAAATCTCTTTCGTGTAGAAGCAAATCAGTAG
CTGAACTTCGCATACATTGTCACCAACAATATGAAGTTTTTCGTCTTATT
CATCGCAATTTTAATCCATCTACACCAGTGTCTTGGTGATGATGCTGATT
TTACCAGTCAGAACTTTAGAATGGTTCTTAATTACATGAAGGATCTTGAT
AACAGTAAACCTCTTTATGTGGACTATGTGAAAACGTTTAAAACACATCA
ACACTCTATTGGATATGTTGGCTATGATTCTAAACACAAGAATATCGTTG
TCGCTTTCGCTGgtaagatttttctttttgattccttgcgagatgacggg
tatgtccgagtcaaagtttgaaattcgatccttagagagactgaatttca
aaagttttgtccatttttgacgtttttgccaaGCTTAGAGAGACTGTTCC
CCAAAATTTAAggcaaaactttcaaattttagttCAAACTTCAAGAATTT
GTCAATAgtcgatttttcattttcgtgattttggagCCCTTGTATCTatt
caatttgatttttaatggtttttgtaccctttTGAGGGAATTTCatgggt
gtgaaaaagggacccttatggcccgcacatacccggaACCTATTTGTCTC
CCCTCCTCGGGATTCCTTCTCTTGATTGAGCAACAGCACCTAAATATCAA
CGATACCACAGNCATTAAACATAAGTATAAAGTTAGAAAGTGGTACCAAA
AATCTCTTTCGTGTAGAAGCAAATCAGTAGCTGAACTTCGCATACATTGT
CACCAACAATATGAAGTTTTTCGTCTTATTCATCGCAATTTTAATCCATC
TACACCAGTGTCTTGGTGATGATGCTGATTTTACCAGTCAGAACTTTAGA
ATGGTTCTTAATTACATGAAGGATCTTGATAACAGTAAACCTCTTTATGT
GGACTATGTGAAAACGTTTAAAACACATCAACACTCTATTGGATATGTTG
GCTATGATTCTAAACACAAGAATATTATTGTCGCTTTCGCTggtaagatt
ttttattttgattccttgcgagatgacgggtatgtccgagtcaaagtttg
aaattcgatccttagagagactgaatttcaaaagttttgtccatttttga
cgtttttgccaaGCTTAGAGAGACTGTTCCCCAAAATTTAAggcaaaact
ttcaaattttagttCAAACTTCAAGAATTTGTCAATAgtcgatttttcat
tttcgtgattttggagCCCTTGTATCTattcaatttgatttttaatggtt
tttgtaccctttTGAGGGAATTTCatgggtgtgaaaaagggacccttatg
gcccgcacatacccggaACCTATTTGTCTCCCCTCCTCGGGATTCCTTCT
CTTGATTGAGCAACAGCACCTAAATATCAACGATACCACAGATCACCTCC
CGTTTTTCCTAGCGTAGTAGAGAGTTCCATAGATAACGGGCCTGGTAATG
ACAGCTATGAGTTTGACTTTCAAAAGCATAGTGGATTTCCAAATTTAATG
GGCTGTTGATCTAACCAGATTGGACAACGCCATAGAGCATAGAGGCAGGG
TAAAGATTTTTCACCGATGGGCAACAGTAAATGTTCGTATGTACGATTAG
ACTAATACTTTCTAAAATAGTGTATAGTGTAtctaatatttttcaaagtt
taagaTTTTAAATAGGTTAGAAGAGTTCAATATCTATAACAAGAGTGGAA
ACCTTAATCTCTGAAGAGATTGAATTCCGCGCTAACACTCATTCTCTGTA
ATGACCATGGCTTGGTAAGAGAATCTGCCAAGGTTGGCTACCCGCTTTTT
CACCCAGATTTAGGATGAATGTCAGACGAGCGCTtggctaaagcaaaaaa
aacacaCCAAAAAAGGTCAATCATAAACAAGTCTGAATGGCATAAAATCG
CAGGTATTATAAGGAGNGCAACAGTAAATGTTCGTATGTACGATTAGACT
AATACTTTCTAAAATAGTGTATAGTGTAtctaatatttttcaaagtttaa
gaTTTTAAATAGGTTAGAAGAGTTCAATATCTATAACAAGAGTGGAAACC
TTAATCTCTGAAGAGATTGAATTCCGCGCTAACACTCATTCTCTGTAATG
ACCATGGCTTGGTAAGAGAATCTGCCAAGGTTGGCTACCCGCTTTTTCAC
CCAGATTTAGGATGAATGTCAGACGAGCGcttggctaaagcaaaacaacc
ACACCAAAAAAGGTCAATCATAAACAAGTCTGAATGGCATAAAATCACGA
ACCTTTACGTGGAGACAGCAGCCTAATCATAACATAAACAGAAGACCCTA
GTCGTATCGCTTTCGTCTCTAGGCAAAATGCATCGCGGATTTAGATGTTT
TGGTTGGCCAGGTCACATTTGCCACAACCCTTTAGAGCAGAGTATGATGT
GCGCAGAATCATTTACCTGTGTGAGTCTGGGGAATCTTTGGCGCATTTCA
GGCCTTGTTCGCCACAGGGGAGATAATCTATCATGAaaaaatcattcatt
ttttttctcgtttCTCAGGTTCCCAAACATTACTCAACTGGCTAAACAAT
CTCAATTTGCAATTGGTTCCATACTCTGTGTGTAGCAAATGCCAAGTTCA
TCCAGGCTTTATGAGAACATACACATCCGCAAAGAAAATGATCTTCGAGC
AAGTCAAAATGCTGGATGCAAAATATCCAGGATCTAAGATCTACGTCACT
GGCTACTCACTAGGCGCTGCTCAAGCCGTCTACTGTGCTTTGGAACTCAA
CCTAGCTGGCTATGACACTGATCTTTTAACCTTTGCATCACCTCGGCCTG
GAAATAAAGCGTTTGCTGACTTCGTTAACAAGAACTTAGGACGGAACAAT
TATCGGGTGACTTATGCTGCTGATACCATAAACGTCATTCCTGGGAAACC
ATATGGATATTACCACGTCGGAACTGAAGTCAACTTCAAAAGATGGGGAG
GTTACCAGGTCGTTCTTCCACGTTTCTCAGACAAGTATCATCCTCGCCCT
TACAATATATTTGATCATTTTCCGagcaattataaaaaattaagaacaga
atAATGGTTTTGTATTGTTGCAATCTCTAAGAAATTTCAAACAGAAAAAA
TCTCAGATTCGTTGAAAAATG Coding sequence (CDS) from alignment at sc0000335:232010..235180+ >TCONS_00019733 ID=TCONS_00019733|Name=TCONS_00019733|organism=Clytia hemisphaerica|type=CDS|length=1536bp|location=Sequence derived from alignment at sc0000335:232010..235180+ (Clytia hemisphaerica)
ATGAAGTTTTTCGTCTTATTCATCGCAATTTTAATCCATCTACACCAGTG
TCTTGGTGATGATGCTGATTTTACCAGTCAGAACTTTAGAATGGTTCTTA
ATTACATGAAGGATCTTGATAACAGTAAACCTCTTTATGTGGACTATGTG
AAAACGTTTAAAACACATCAACACTCTATTGGATATGTTGGCTATGATTC
TAAACACAAGAATATCGTTGTCGCTTTCGCTGGTTCCCAAACATTACTCA
ACTGGCTAAACAATCTCAATTTGCAATTGGTTCCATACTCTGTGTGTAGC
AAATGCCAAGTTCATCCAGGCTTTATGAGAACATACACATCCGCAAAGAA
AATGATCTTCGAGCAAGTCAAAATGCTGGATGCAAAATATCCAGGATCTA
AGATCTACGTCACTGGCTACTCACTAGGCGCTGCTCAAGCCGTCTACTGT
GCTTTGGAACTCAACCTAGCTGGCTATGACACTGATCTTTTAACCTTTGC
ATCACCTCGGCCTGGAAATAAAGCGTTTGCTGACTTCGTTAACAAGAACT
TAGGACGGAACAATTATCGGGTGACTTATGCTGCTGATACCATAAACGTC
ATTCCTGGGAAACCATATGGATATTACCACGTCGGAACTGAAGTCAACTT
CAAAAGATGGGGAGGTTACCAGGTCGTTCTTCCACGTTTCTCAGACAAGT
ATCATCCTCGCCCTTACAATATATTTGATCATTTTCCGagcaattataaa
aaattaagaacagaatAAATGAAGTTTTTCGTCTTATTCATCGCAATTTT
AATCCATCTACACCAGTGTCTTGGTGATGATGCTGATTTTACCAGTCAGA
ACTTTAGAATGGTTCTTAATTACATGAAGGATCTTGATAACAGTAAACCT
CTTTATGTGGACTATGTGAAAACGTTTAAAACACATCAACACTCTATTGG
ATATGTTGGCTATGATTCTAAACACAAGAATATCGTTGTCGCTTTCGCTG
GTTCCCAAACATTACTCAACTGGCTAAACAATCTCAATTTGCAATTGGTT
CCATACTCTGTGTGTAGCAAATGCCAAGTTCATCCAGGCTTTATGAGAAC
ATACACATCCGCAAAGAAAATGATCTTCGAGCAAGTCAAAATGCTGGATG
CAAAATATCCAGGATCTAAGATCTACGTCACTGGCTACTCACTAGGCGCT
GCTCAAGCCGTCTACTGTGCTTTGGAACTCAACCTAGCTGGCTATGACAC
TGATCTTTTAACCTTTGCATCACCTCGGCCTGGAAATAAAGCGTTTGCTG
ACTTCGTTAACAAGAACTTAGGACGGAACAATTATCGGGTGACTTATGCT
GCTGATACCATAAACGTCATTCCTGGGAAACCATATGGATATTACCACGT
CGGAACTGAAGTCAACTTCAAAAGATGGGGAGGTTACCAGGTCGTTCTTC
CACGTTTCTCAGACAAGTATCATCCTCGCCCTTACAATATATTTGATCAT
TTTCCGagcaattataaaaaattaagaacagaatAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00019733-exon-sc0000335-1491911889:232010..232321 | TCONS_00019733-exon-sc0000335-1491911889:232010..232321 | Clytia hemisphaerica | exon |
| TCONS_00019733-exon-sc0000335-1510915933:232010..232321 | TCONS_00019733-exon-sc0000335-1510915933:232010..232321 | Clytia hemisphaerica | exon |
| TCONS_00019733-exon-sc0000335-1575043694:232010..232321 | TCONS_00019733-exon-sc0000335-1575043694:232010..232321 | Clytia hemisphaerica | exon |
| TCONS_00019733-exon-sc0000335-1491911889:234578..235180 | TCONS_00019733-exon-sc0000335-1491911889:234578..235180 | Clytia hemisphaerica | exon |
| TCONS_00019733-exon-sc0000335-1510915933:234578..235180 | TCONS_00019733-exon-sc0000335-1510915933:234578..235180 | Clytia hemisphaerica | exon |
| TCONS_00019733-exon-sc0000335-1575043694:234578..235180 | TCONS_00019733-exon-sc0000335-1575043694:234578..235180 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000335 | supercontig | sc0000335:232010..235180 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0006629 | lipid metabolic process |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0006629 |
lipid metabolic process |
Blast
The following BLAST results are available for this feature:
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