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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00019718 ID=TCONS_00019718|Name=TCONS_00019718|organism=Clytia hemisphaerica|type=transcript|length=934bp
TTGAATTTGAGAATTCGCTAGTTGTTTGCTTTGGTATAATCATCGGAAAT
GGCTGCCACACCCGTGGAAGAGTGGGAAGAATATAAAAATCTGTCCCCTG
AAGACATCGAAGAGTTTCAAGTTTTGATTGAACTTCACAATTTAACCAAG
GCTCATACAGAACGATTAGATGCTAAACATGCAGAGGTCGAACGTTTGAT
GCGTGATCTCAAGAAATTTCGTAAACAGAGGGATGAGACGATTCAAGCGT
TGAGAGATACATATGATGCTAAATATGCTGCACTTCAAAACAAAGTAGAA
GAAGCTGATACTATACGGGAAGAACTTCGAACCACACATTATGAATTGCG
TATATGTCTACTTCATCTCAAGGAAAACCCGAGCAGAAACCAATccgaaa
ctgaaactgaaagtgaaagtgagaGCGACAGCGATGACGTTTCTGAATCG
GTTTTTGAATCGAGCCGATCCTCGTTTAATGATGCCAACGACGAGGAAGA
AGAATCTGTTTCTCCATCACCCGAAAACGTTCCTGACCTCCAAAGGCAAG
ATGATAAATTTATAAACGTCCAAGGGAGTGAAAAATGTATTTCTACAGAT
CGACCTGAAGAACCTTTCCTACCTGAAGTTCCTTTGACAGAAAAGGAAat
cgaagaagaagatgaaCGACTCACAAACCAGGCCGTTGCTGCACAATGAT
CGGTTAATAAACTTTATTATTTATGTGACTgttttttgatatttcacaaG
ACATGAAAATTCCTTTGTTCCACATTCGATATCATATATTGGCATGGATG
ATATCATGATTACTCTGTAAACGGTAGAAATTGATAAATAGGAAAATATT
GAatataatatttcaatcaaagatCATCGTTCCCTATAAAATGAACGTCT
TTCTCAACTTTGGGGTATATACCTTGAAGGCTTT Run BLAST on NCBI protein sequence of TCONS_00019718-protein >TCONS_00019718-protein ID=TCONS_00019718-protein|Name=TCONS_00019718-protein|organism=Clytia hemisphaerica|type=polypeptide|length=216bp
MAATPVEEWEEYKNLSPEDIEEFQVLIELHNLTKAHTERLDAKHAEVERL
MRDLKKFRKQRDETIQALRDTYDAKYAALQNKVEEADTIREELRTTHYEL
RICLLHLKENPSRNQSETETESESESDSDDVSESVFESSRSSFNDANDEE
EESVSPSPENVPDLQRQDDKFINVQGSEKCISTDRPEEPFLPEVPLTEKE
IEEEDERLTNQAVAAQ Run BLAST on NCBI transcript from alignment at sc0000335:75050..76064+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00019718 ID=TCONS_00019718|Name=TCONS_00019718|organism=Clytia hemisphaerica|type=transcript|length=1015bp|location=Sequence derived from alignment at sc0000335:75050..76064+ (Clytia hemisphaerica)
TTGAATTTGAGAATTCGCTAGTTGTTTGCTTTGGTATAATCATCGGAAAT
GGCTGCCACACCCGTGGAAGAGTGGGAAGAATATAAAAATCTGTCCCCTG
AAGACATCGAAGAGTTTCAAGTTTTGATTGAACTTCACAATTTAACCAAG
GCTCATACAGAACGATTAGATGCTAAACATGCAGAGGTCGAACGTTTGAT
GCGTGATCTCAAGAAATTTCGTAAACAGAGGGATGAGACGATTCAAGCGT
TGAGAGATACATATGATGCTAAATATGCTGCACTTCAAAACAAAGTAGAA
GAAGCTGATACTATACGGGAAGAACTTCGAACCACACATTATGAATTGCG
TATATGTCTACTTCATCTCAAGGAAAACCCGAGCAGAAACCAATccgaaa
ctgaaactgaaagtgaaagtgagaGCGACAGCGATGACGTTTCTGAATCG
GTTTTTGAATCGAGCCGATCCTCGTTTAATGATGCCAACGACGAGGAAGA
AGAATCTGTTTCTCCATCACCCGAAAACGTTCCTGACCTCCAAAGGCAAG
ATGATAAATTTATAAACGTCCAAGGGAGTGAAAAATGTATTTCTACAGAT
CGACCTGAAGAACCTTTCCTACCTGAAGTTCCTTTGACAGAAAAGGAAat
cgaagaagaagatgaaCGACTCACAAACCAGGCCGTTGCTGCACAATGAT
CGGTTAATAAACTTTATTATTTATGTGACTgttttttgatatttcacaaG
ACATGAAAATTCCTTTGTTCNCCCCAATAATCGGTTAATAAACTTTATTA
TTTATGTGACTGCTATTTAATATTTCACAAGACATGAAAATTCCTTTGTT
CCACATTCGATATCATATATTGGCATGGATGATATCATGATTACTCTGTA
AACGGTAGAAATTGATAAATAGGAAAATATTGAatataatatttcaatca
aagatCATCGTTCCCTATAAAATGAACGTCTTTCTCAACTTTGGGGTATA
TACCTTGAAGGCTTT Coding sequence (CDS) from alignment at sc0000335:75050..76064+ >TCONS_00019718 ID=TCONS_00019718|Name=TCONS_00019718|organism=Clytia hemisphaerica|type=CDS|length=651bp|location=Sequence derived from alignment at sc0000335:75050..76064+ (Clytia hemisphaerica)
ATGGCTGCCACACCCGTGGAAGAGTGGGAAGAATATAAAAATCTGTCCCC
TGAAGACATCGAAGAGTTTCAAGTTTTGATTGAACTTCACAATTTAACCA
AGGCTCATACAGAACGATTAGATGCTAAACATGCAGAGGTCGAACGTTTG
ATGCGTGATCTCAAGAAATTTCGTAAACAGAGGGATGAGACGATTCAAGC
GTTGAGAGATACATATGATGCTAAATATGCTGCACTTCAAAACAAAGTAG
AAGAAGCTGATACTATACGGGAAGAACTTCGAACCACACATTATGAATTG
CGTATATGTCTACTTCATCTCAAGGAAAACCCGAGCAGAAACCAATccga
aactgaaactgaaagtgaaagtgagaGCGACAGCGATGACGTTTCTGAAT
CGGTTTTTGAATCGAGCCGATCCTCGTTTAATGATGCCAACGACGAGGAA
GAAGAATCTGTTTCTCCATCACCCGAAAACGTTCCTGACCTCCAAAGGCA
AGATGATAAATTTATAAACGTCCAAGGGAGTGAAAAATGTATTTCTACAG
ATCGACCTGAAGAACCTTTCCTACCTGAAGTTCCTTTGACAGAAAAGGAA
atcgaagaagaagatgaaCGACTCACAAACCAGGCCGTTGCTGCACAATG
A
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00019718-exon-sc0000335-1491911889:75050..75801 | TCONS_00019718-exon-sc0000335-1491911889:75050..75801 | Clytia hemisphaerica | exon |
| TCONS_00019718-exon-sc0000335-1510915933:75050..75801 | TCONS_00019718-exon-sc0000335-1510915933:75050..75801 | Clytia hemisphaerica | exon |
| TCONS_00019718-exon-sc0000335-1575043694:75050..75801 | TCONS_00019718-exon-sc0000335-1575043694:75050..75801 | Clytia hemisphaerica | exon |
| TCONS_00019718-exon-sc0000335-1491911889:75883..76064 | TCONS_00019718-exon-sc0000335-1491911889:75883..76064 | Clytia hemisphaerica | exon |
| TCONS_00019718-exon-sc0000335-1510915933:75883..76064 | TCONS_00019718-exon-sc0000335-1510915933:75883..76064 | Clytia hemisphaerica | exon |
| TCONS_00019718-exon-sc0000335-1575043694:75883..76064 | TCONS_00019718-exon-sc0000335-1575043694:75883..76064 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000335 | supercontig | sc0000335:75050..76064 + |
Blast
The following BLAST results are available for this feature:
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