TCONS_00019702 (transcript) - C. hemisphaerica

Overview
NameTCONS_00019702
Unique NameTCONS_00019702
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length446

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00019702 ID=TCONS_00019702|Name=TCONS_00019702|organism=Clytia hemisphaerica|type=transcript|length=446bp
TAGCATCCTTTTTAAAAAccctggctattaggtacctgagagtaagTATA
CCTATTTTTTCATACTAACTAAGATTTCTCTCACCTCTAAAATTGCgcaa
taagtttttttttgcatctCTTTTCAGATTCGCATTGTTAGACCACCCAA
TTATTTCATGGCCATCACTATTGGTGTCTTGCTTGCTGGTATTGGAGCTT
TGCTTTACGTCAAAAGAAAAAGCATTGAAATTATCTACAATAAAGACTAC
TGGGGAATTTTATGTTTGACAATAGCCTTTATGATGATGAGTGGCCAAAT
GTGGAACCATATCAGAGGTCCTCCATACGCACACAGAAACCCACAGACTG
GTGAAATTAATTATATCCATGGAAGCAGTGATGGTCAATTGATCGCTGAA
ACTTACATCGTCTTTCTTTTGTATGCATGCGTCACTGTAGGATTCN
Run BLAST on NCBI

transcript from alignment at sc0000335:6046..7225+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00019702 ID=TCONS_00019702|Name=TCONS_00019702|organism=Clytia hemisphaerica|type=transcript|length=1180bp|location=Sequence derived from alignment at sc0000335:6046..7225+ (Clytia hemisphaerica)
TAGCATCCTTTTTAAAAAccctggctattaggtacctgagagtaagTATA
CCTATTTTTTCATACTAACTAAGATTTCTCTCACCTCTAAAATTGCgcaa
taagtttttttttgcatctCTTTTCAGATTCGCATTGTTAGACCACCCAA
TTATTTCATGGCCATCACTATTGGTGTCTTGCTTGCTGGTATTGGAGCTT
TGCTTTACGTCAAAAGAAAAAGCATTGAAATTATCTACAATAAAGACTAC
TGGGGAATTTTATGTTTGGTGAGGCTAATATCTTCGGTCTGATCTGATTC
TGCAACAAAGTCAAGTTTACCATTTCAATCAGTTGCAAGGTTTATCTATA
TATCTATTATCTAGAGTAATTAAtgtaatttcttcctttattcGAGCTAC
AATCCTGAATTTATTTCCATTTTGTTTTCCCTTCACAGACAATAGCCTTT
ATGATGATGAGTGGCCAAATGTGGAACCATATCAGAGGTCCTCCATACGC
ACACAGAAACCCACAGACTGGTGAAATTGTATGTTATTTCTCTTCTTCAA
ATTTAGTTTAGCTCAAATCAAATCATTTTGTTAACGCTTGccgtgaaaaa
aaataaaacgacGGAAATGTTATCATAGTTCATAAAACTTATGAGTAGAT
TACCCAAGTTATAACTAAACTTTGTCAAGGGTTTCGAGCATCTTGTTAAC
CATCAAGCCCAAGAGCATTTTTTGTTTCTACCAATTGTTGTAATTATTTA
ATTCTTTCTCTTTTCAGAATTATATCCATGGAAGCAGTGATGGTCAATTG
ATCGCTGAAACTTACATCGTCTTTCTTTTGTGTATCCTTTTCCACTCACT
TTTTAAGTtaggaattttattttcttacttGCTTTTACGCCTCATTCACC
tccaaattcaaaataattccaaaaagaataccaaggcaaattttgtttgt
gtaatttagatttttcatctGTCTTGTTTTGTTAAACCCTTGTTTCAGTG
ATCCGGTGAGATCTTCCATAAATTCTTGTCTCAGTGAACCGTTGGACATT
CCCATACACCccttcacccctgtctcagtggcCGGTGAAATTCAGAAAGT
ATTAAGCATTAAAGTCATTTGTCATCTTTGTCCTTAACTTTACTTACATA
ATATAGATGCATGCGTCACTGTAGGATTCN
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_011093XLOC_011093Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00019702-exon-sc0000335-1491911889:6046..6313TCONS_00019702-exon-sc0000335-1491911889:6046..6313Clytia hemisphaericaexon
TCONS_00019702-exon-sc0000335-1510915933:6046..6313TCONS_00019702-exon-sc0000335-1510915933:6046..6313Clytia hemisphaericaexon
TCONS_00019702-exon-sc0000335-1575043694:6046..6313TCONS_00019702-exon-sc0000335-1575043694:6046..6313Clytia hemisphaericaexon
TCONS_00019702-exon-sc0000335-1491911889:6484..6573TCONS_00019702-exon-sc0000335-1491911889:6484..6573Clytia hemisphaericaexon
TCONS_00019702-exon-sc0000335-1510915933:6484..6573TCONS_00019702-exon-sc0000335-1510915933:6484..6573Clytia hemisphaericaexon
TCONS_00019702-exon-sc0000335-1575043694:6484..6573TCONS_00019702-exon-sc0000335-1575043694:6484..6573Clytia hemisphaericaexon
TCONS_00019702-exon-sc0000335-1491911889:6813..6876TCONS_00019702-exon-sc0000335-1491911889:6813..6876Clytia hemisphaericaexon
TCONS_00019702-exon-sc0000335-1510915933:6813..6876TCONS_00019702-exon-sc0000335-1510915933:6813..6876Clytia hemisphaericaexon
TCONS_00019702-exon-sc0000335-1575043694:6813..6876TCONS_00019702-exon-sc0000335-1575043694:6813..6876Clytia hemisphaericaexon
TCONS_00019702-exon-sc0000335-1491911889:7202..7225TCONS_00019702-exon-sc0000335-1491911889:7202..7225Clytia hemisphaericaexon
TCONS_00019702-exon-sc0000335-1510915933:7202..7225TCONS_00019702-exon-sc0000335-1510915933:7202..7225Clytia hemisphaericaexon
TCONS_00019702-exon-sc0000335-1575043694:7202..7225TCONS_00019702-exon-sc0000335-1575043694:7202..7225Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000335supercontigsc0000335:6046..7225 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
116.761	127.047	61.3995	44.7059	82.0429	60.986	142.859	131.745	106.779	90.9152	106.679	86.8606	69.1584	69.5187	74.3541	92.8535	74.4076	87.4735	36.3426	37.1859	54.3024	51.3048	63.9576	64.0042	74.3825	79.1802	48.1683	26.0979	63.257	51.4116
Blast
[Close]
BLAST of TCONS_00019702 vs. Swiss-Prot (Human)
Match: TUSC3 (Tumor suppressor candidate 3 OS=Homo sapiens GN=TUSC3 PE=1 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 1.554e-32
Identity = 60/129 (46.51%), Postives = 89/129 (68.99%), Query Frame = 2 
Query:   59 FILTKISLTS-KIAQ*VFFCISFQIRIVRPPNYFMXXXXXXXXXXXXXXXYVKRKSIEIIYNKDYWGILCLTIAFMMMSGQMWNHIRGPPYAHRNPQTGEINYIHGSSDGQLIAETYIVFLLYACVTVG 442
            F L +I   + ++A+ +       IR+ RPPNY   I + +L++ +G LLY++R ++E IYNK  W ++ L I F M SGQMWNHIRGPPYAH+NP  G+++YIHGSS  Q +AE++I+ +L A +T+G
Sbjct:  166 FDLQRIGFAAEQLAKWIADRTDVHIRVFRPPNYSGTIALALLVSLVGGLLYLRRNNLEFIYNKTGWAMVSLCIVFAMTSGQMWNHIRGPPYAHKNPHNGQVSYIHGSSQAQFVAESHIILVLNAAITMG 294
The following BLAST results are available for this feature:
BLAST of TCONS_00019702 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
TUSC31.554e-3246.51Tumor suppressor candidate 3 OS=Homo sapiens GN=TU... [more]
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