TCONS_00019686 (transcript) - C. hemisphaerica

Overview
NameTCONS_00019686
Unique NameTCONS_00019686
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1098

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00019686 ID=TCONS_00019686|Name=TCONS_00019686|organism=Clytia hemisphaerica|type=transcript|length=1098bp
AGCAAAGTCGAAAAGATCTTCAACCTTCACGCATGAAATTCGATCTGGCA
TGTGTAGAGAAGCTTGACCAGACCTTACGTTCTTGGGGTAATGTGTTTGA
CCCACGGAGCACTCTTATCAACATCTCCTCTGGTGTCGAAGCCTCTGATG
ATGTAACGTGGATGTTACTGGACGCCGTCAACATAGGTTACACCAAAATG
ATGACTTTTTGGAACGAACGTTTCAAAGCAAACGAAAACTGTTTCTACTC
GGCCATCAAAAGAAATAATCTGCAGACCTTCAAGAACATGGTTGTACGTA
AGACCGTTAAGAACAGCAACAAGCTCACCACCATTGCAGCAGAGAGAAGC
CTTTTCGGAAGATTATTAATCCTAGCGAAATCAAGGGAGTCTCTTCCCCT
GGAGTATGTGTTGGCTCACTCACTCAGCCCCATACCTTGGTCGATTGGTC
TTCCCGATGGTGGCCTTGTGAAGACTTGTAAACATAAGTTGCGAgATGCT
ATCGAGAAAGATGTCTTGCTAGCAACGACAAATCCTGTGGTTAACTGCAC
AATTTGGGATGGAATGGTTCTCCTGCAGCAAATGGCATCCGTCCCCTTAT
CAATGTTCGGTGATGTCGCGGAGTATATCCTAAAACGTATTCTTCAAAGT
AGAGTAGTCTACTTCGTTACTGATCAGTACAAGCCTGGCTCGATCAAGTC
CTACGAGCGTGAAAGGAGAAAGGAGTCTGGCAATGTGAAGATCAGCATTG
AAAGACGTGATCAGGCTCGCCCGAAACAATGGTCAAAATACCTACGTGAT
GCTGAAAACAAGACCAATCTGGTTGAGTTTCTTTTCAAAGAGTGGTCAAA
AATACGCGAAGTATCTCGAAACGTCTACTCTCTACGTAAACCACGGCAAT
CAGTTCCATAAGATTTCTGCTTCAGGAGGAGAGCTATTTTGTGAGCAAGT
TCCTGAATTGGCGACAGATCAGGAAGAGGCAGATACCAAGGTCTTTTTAT
GTGCCAAACACGCAGCAGAGAAGGAATCATCCGTATGCATCAAAACGGTT
GACAGTGACATTCCGATCTATGCTCTTCATTTTGCTGCAAAAATCCCA
Run BLAST on NCBI

protein sequence of TCONS_00019686-protein

>TCONS_00019686-protein ID=TCONS_00019686-protein|Name=TCONS_00019686-protein|organism=Clytia hemisphaerica|type=polypeptide|length=302bp
QSRKDLQPSRMKFDLACVEKLDQTLRSWGNVFDPRSTLINISSGVEASDD
VTWMLLDAVNIGYTKMMTFWNERFKANENCFYSAIKRNNLQTFKNMVVRK
TVKNSNKLTTIAAERSLFGRLLILAKSRESLPLEYVLAHSLSPIPWSIGL
PDGGLVKTCKHKLRDAIEKDVLLATTNPVVNCTIWDGMVLLQQMASVPLS
MFGDVAEYILKRILQSRVVYFVTDQYKPGSIKSYERERRKESGNVKISIE
RRDQARPKQWSKYLRDAENKTNLVEFLFKEWSKIREVSRNVYSLRKPRQS
VP
Run BLAST on NCBI

transcript from alignment at sc0000333:219565..220824-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00019686 ID=TCONS_00019686|Name=TCONS_00019686|organism=Clytia hemisphaerica|type=transcript|length=1260bp|location=Sequence derived from alignment at sc0000333:219565..220824- (Clytia hemisphaerica)
AGCAAAGTCGAAAAGATCTTCAACCTTCACGCATGAAATTCGATCTGGCA
TGTGTAGAGAAGCTTGACCAGACCTTACGTTCTTGGGGTAATGTGTTTGA
CCCACGGAGCACTCTTATCAACATCTCCTCTGGTGTCGAAGCCTCTGATG
ATGTAACGTGGATGTTACTGGACGCCGTCAACATAGGTTACACCAAAATG
ATGACTTTTTGGAACGAACGTTTCAAAGCAAACGAAAACTGTTTCTACTC
GGCCATCAAAAGAAATAATCTGCAGACCTTCAAGAACATGGTTGTACGTA
AGACCGTTAAGAACAGCAACAAGCTCACCACCATTGCAGCAGAGAGAAGC
CTTTTCGGAAGATTATTAATCCTAGCGAAATCAAGGGAGTCTCTTCCCCT
GGAGTATGTGTTGGCTCACTCACTCAGCCCCATACCTTGGTCGATTGGTC
TTCCCGATGGTGGCCTTGTGAAGACTTGTAAACATAAGTTGCGAGGTAAA
ACATTCAAAAATTTAAGATGAGCATTATTGCACAACTCTCAATACTCACC
TGTACAGCTTTTTAACCAACTTTCATGATTAGCTAAAGGTCCTTCTTAGC
TTCTTATTGTAATTTAAAGCTTTAAATTTTTAAACTCAAATTACTTTTAT
AATTCAGATGCTATCGAGAAAGATGTCTTGCTAGCAACGACAAATCCTGT
GGTTAACTGCACAATTTGGGATGGAATGGTTCTCCTGCAGCAAATGGCAT
CCGTCCCCTTATCAATGTTCGGTGATGTCGCGGAGTATATCCTAAAACGT
ATTCTTCAAAGTAGAGTAGTCTACTTCGTTACTGATCAGTACAAGCCTGG
CTCGATCAAGTCCTACGAGCGTGAAAGGAGAAAGGAGTCTGGCAATGTGA
AGATCAGCATTGAAAGACGTGATCAGGCTCGCCCGAAACAATGGTCAAAA
TACCTACGTGATGCTGAAAACAAGACCAATCTGGTTGAGTTTCTTTTCAA
AGAGTGGTCAAAAATACGCGAAGTATCTCGAAACGTCTACTCTCTACGTA
AACCACGGCAATCAGTTCCATAAGATTTCTGCTTCAGGAGGAGAGCTATT
TTGTGAGCAAGTTCCTGAATTGGCGACAGATCAGGAAGAGGCAGATACCA
AGGTCTTTTTATGTGCCAAACACGCAGCAGAGAAGGAATCATCCGTATGC
ATCAAAACGGTTGACAGTGACATTCCGATCTATGCTCTTCATTTTGCTGC
AAAAATCCCA

Coding sequence (CDS) from alignment at sc0000333:219565..220824-

>TCONS_00019686 ID=TCONS_00019686|Name=TCONS_00019686|organism=Clytia hemisphaerica|type=CDS|length=1818bp|location=Sequence derived from alignment at sc0000333:219565..220824- (Clytia hemisphaerica)
ATGCTATCGAGAAAGATGTCTTGCTAGCAACGACAAATCCTGTGGTTAAC
TGCACAATTTGGGATGGAATGGTTCTCCTGCAGCAAATGGCATCCGTCCC
CTTATCAATGTTCGGTGATGTCGCGGAGTATATCCTAAAACGTATTCTTC
AAAGTAGAGTAGTCTACTTCGTTACTGATCAGTACAAGCCTGGCTCGATC
AAGTCCTACGAGCGTGAAAGGAGAAAGGAGTCTGGCAATGTGAAGATCAG
CATTGAAAGACGTGATCAGGCTCGCCCGAAACAATGGTCAAAATACCTAC
GTGATGCTGAAAACAAGACCAATCTGGTTGAGTTTCTTTTCAAAGAGTGG
TCAAAAATACGCGAAGTATCTCGAAACGTCTACTCTCTACGTAAACCACG
GCAATCAGTTCCATAACAAAGTCGAAAAGATCTTCAACCTTCACGCATGA
AATTCGATCTGGCATGTGTAGAGAAGCTTGACCAGACCTTACGTTCTTGG
GGTAATGTGTTTGACCCACGGAGCACTCTTATCAACATCTCCTCTGGTGT
CGAAGCCTCTGATGATGTAACGTGGATGTTACTGGACGCCGTCAACATAG
GTTACACCAAAATGATGACTTTTTGGAACGAACGTTTCAAAGCAAACGAA
AACTGTTTCTACTCGGCCATCAAAAGAAATAATCTGCAGACCTTCAAGAA
CATGGTTGTACGTAAGACCGTTAAGAACAGCAACAAGCTCACCACCATTG
CAGCAGAGAGAAGCCTTTTCGGAAGATTATTAATCCTAGCGAAATCAAGG
GAGTCTCTTCCCCTGGAGTATGTGTTGGCTCACTCACTCAGCCCCATACC
TTGGTCGATTGGTCTTCCCGATGGTGGCCTTGTGAAGACTTGTAAACATA
AGTTGCGAGATGCTATCGAGAAAGATGTCTTGCTAGCAACGACAAATCCT
GTGGTTAACTGCACAATTTGGGATGGAATGGTTCTCCTGCAGCAAATGGC
ATCCGTCCCCTTATCAATGTTCGGTGATGTCGCGGAGTATATCCTAAAAC
GTATTCTTCAAAGTAGAGTAGTCTACTTCGTTACTGATCAGTACAAGCCT
GGCTCGATCAAGTCCTACGAGCGTGAAAGGAGAAAGGAGTCTGGCAATGT
GAAGATCAGCATTGAAAGACGTGATCAGGCTCGCCCGAAACAATGGTCAA
AATACCTACGTGATGCTGAAAACAAGACCAATCTGGTTGAGTTTCTTTTC
AAAGAGTGGTCAAAAATACGCGAAGTATCTCGAAACGTCTACTCTCTACG
TAAACCACGGCAATCAGTTCCATAACAAAGTCGAAAAGATCTTCAACCTT
CACGCATGAAATTCGATCTGGCATGTGTAGAGAAGCTTGACCAGACCTTA
CGTTCTTGGGGTAATGTGTTTGACCCACGGAGCACTCTTATCAACATCTC
CTCTGGTGTCGAAGCCTCTGATGATGTAACGTGGATGTTACTGGACGCCG
TCAACATAGGTTACACCAAAATGATGACTTTTTGGAACGAACGTTTCAAA
GCAAACGAAAACTGTTTCTACTCGGCCATCAAAAGAAATAATCTGCAGAC
CTTCAAGAACATGGTTGTACGTAAGACCGTTAAGAACAGCAACAAGCTCA
CCACCATTGCAGCAGAGAGAAGCCTTTTCGGAAGATTATTAATCCTAGCG
AAATCAAGGGAGTCTCTTCCCCTGGAGTATGTGTTGGCTCACTCACTCAG
CCCCATACCTTGGTCGATTGGTCTTCCCGATGGTGGCCTTGTGAAGACTT
GTAAACATAAGTTGCGAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_011078XLOC_011078Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00019686-proteinTCONS_00019686-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00019686-exon-sc0000333-1575043694:220330..220824TCONS_00019686-exon-sc0000333-1575043694:220330..220824Clytia hemisphaericaexon
TCONS_00019686-exon-sc0000333-1575043694:219565..220167TCONS_00019686-exon-sc0000333-1575043694:219565..220167Clytia hemisphaericaexon
TCONS_00019686-exon-sc0000333-1510915933:220330..220824TCONS_00019686-exon-sc0000333-1510915933:220330..220824Clytia hemisphaericaexon
TCONS_00019686-exon-sc0000333-1510915933:219565..220167TCONS_00019686-exon-sc0000333-1510915933:219565..220167Clytia hemisphaericaexon
TCONS_00019686-exon-sc0000333-1491911889:220330..220824TCONS_00019686-exon-sc0000333-1491911889:220330..220824Clytia hemisphaericaexon
TCONS_00019686-exon-sc0000333-1491911889:219565..220167TCONS_00019686-exon-sc0000333-1491911889:219565..220167Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000333supercontigsc0000333:219565..220824 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.119722	0.0778321	0.0451853	0.0442067	0.269087	0.340218	0.153922	0.4323	0.134517	0.499863	0.161726	0.106313	0.291953	0.137817	0.226608	0.048637	0.449376	0.184238	0	0	0	0.056461	0	0.0415999	0.55701	0.688317	0.0547211	0	0.0442942	0.0451288
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00019686 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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