TCONS_00019673 (transcript) - C. hemisphaerica

Overview
NameTCONS_00019673
Unique NameTCONS_00019673
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1813

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00019673 ID=TCONS_00019673|Name=TCONS_00019673|organism=Clytia hemisphaerica|type=transcript|length=1813bp
AAACCATAAACCACGTGATCTACAATAGTGGATTTCATTGGTTTAGAAAA
TTCAACAACCAATCAAATTCGATCATGTGCACTACATAAACTGCACCTTG
ATCTTCCATTCCTCATTCGTTCTTCGCAAGGAAGTACAGGCGAACCGTTA
CGTCGCAAAGTATATCCCTGACTAAGTTTATCcacttttcaaaacttttc
ttctttgataacaaATCTCAATCAACATGCGTGAATGTATCTCAGTCCAT
GTTGGCCAAGCTGGAACCCAAATTGGTAATGCCTGCTGGGAATTGTACTG
TTTGGAGCATGGAATCCAACCTGATGGTCAAATGCCTTCAGACAAAACCA
TTGGAGGTGGAGATGATTCATTCAACACTTTCTTCAGTGAAACTGGTGCC
GGTAAACATGTCCCAAGAGCTGTTTTCATGGATTTAGAACCAACTGTTGT
CGaTGAAATCAGAACTGGAACATACCGTCAACTTTTCCACCCTGAACAAC
TGATCACTGGTAAAGAAGATGCTGCCAACAATTACGCTCGTGGCCATTAC
ACTGTTGGTAAAGAAATCATCGATCAAGTTTTGGACCGTACTAGAAAACT
CGCTGATCAATGCACTGGTCTTCAAGGATTTTTGATCTTCCACTCCTTCG
GTGGTGGCACCGGATCTGGATTCACCTCCTTGTTGATGGAACGTCTTTCT
GTCGATTATGGAAAGAAGTCCAAATTAGAGTTTGCTGTCTACCCAGCTCC
CCAAATCTCCACAGCTGTTGTTGAACCATACAATTCTGTCTTGACCACCC
ACACCACATTGGAACACTCTGACTGTGCATTCATGGTTGATAACGAAGCT
ATCTACGATATCTGCCGAAGAAACCTCGACATTGAGCGCCCCACCTACAC
CAACTTGAACAGATTGATTGGTCAAATTGTGTCATCTATCACTGCATCAC
TTCGGTTCGATGGGGCCCTAAATGTTGACTTGACTGAATTTCAAACTAAC
TTGGTCCCATACCCACGTATCCATTTCCCATTGGCAACTTATGCTCCAGT
TATCTCTGCAGAGAAAGCTTACCATGAACAGCTCACTGTCTCAGAGATCA
CTAATGCCTGTTTCGAACCAGCTAACCAGATGGTCAAATGTGATCCACGA
CATGGTAAATACATGGCTTGCTGCTTGCTCTACCGTGGTGATGTTGTCCC
CAAAGATGTCAATGCTGCCATTGCtactatcaaaacaaaacgtACAATCC
AATTTGTTGACTGGTGCCCAACTGGATTCAAAGTTGGAATCAATTACCAA
CCGCCAACTGTTGTTCCAGGAGGTGATCTTGCTAAAGTTCAACGTGCTGT
TTGCATGTTGTCCAACACCACTGCTGTTGCTGAAGCATGGGCCCGTTTGG
ATcataaatttgatttgatgTACGCTAAACGTGCCTTTGTCCATTGGTAT
GTCGGTGAAGGTATGGAAGAAGGAGAGTTTTCAGAAGCTCGTGAAGACAT
GGCAGCCTTGGAGAAAGATTACGAAGAAGTCGGTGTTGATTCCATTGATG
ATGATGGAGAAGGCGAAGATGACGAATATTAAGGAGATCTCCCCTAAACT
GAGATCCTTTTTACAGTTATTTACTTGTAAGCAATATGTGTAAAAGAAAT
ATGatgacatgaaaacaaagatacAAAAGACTGAAAATGATAAATTGAGA
CGTCGTTCAgttcctttttgttttgaaatttttatactTGATTCAATTTT
AGGTCTTTtctaatttgtaaaattttcgatttgttctttACTGAAGTCCG
TTCCCAAAACATC
Run BLAST on NCBI

transcript from alignment at sc0000333:117016..120653-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00019673 ID=TCONS_00019673|Name=TCONS_00019673|organism=Clytia hemisphaerica|type=transcript|length=3638bp|location=Sequence derived from alignment at sc0000333:117016..120653- (Clytia hemisphaerica)
AAACCATAAACCACGTGATCTACAATAGTGGATTTCATTGGTTTAGAAAA
TTCAACAACCAATCAAATTCGATCATGTGCACTACATAAACTGCACCTTG
ATCTTCCATTCCTCATTCGTTCTTCGCAAGGAAGTACAGGCGAACCGTTA
CGTCGCAAAGTATATCCCTGACTAAGTTTATCCACTTTTCAAAACTTTTC
TTCTTTGATAACAAATCTCAATCAACATGGTAAGTCCATCAGTTTTTTTC
AGCCTTTTTGCCTACAGTTTGGATCACTTCTACACAGGCCACAACTGACT
TATCTTTGTAGACTCCTATCCTACAGATTTTAATCGTTTCTAATCGCTAA
AGAAATTGCTTCATACCTAATCAAACTTCCCGTGATTTTTTTTTTGCTTT
GTTGTGGTCAAAATTCTTAGAATTCTACTAGACAATGCAGTGTCTTCATT
TTCATGGTGTTTAACTCGTCATGTGTCGTAACGTTTCGTTTTGTTATGAA
GACATTGCATTGCTTGATTTCAAATGGGGGAGTGTGCCTTGTCTAAGCAA
AAATTTGTAATCTCATTCAAATTTTCTAGCGTGAATGTATCTCAGTCCAT
GTTGGCCAAGCTGGAACTCAAATTGGTAATGCCNTGCAAACAATTAGAGC
ACTTTATTCTTTGAAGTGCAAAATTAACAGCAATCTCTGATGCTGGGCCT
TCATGCCGCCAGGCTGCTTGTTTTGATTATGTTATCCTTTTTCCTATGTG
TCATTTTCGTCTCTATAGCAACTTGTAACAGATGTAAACAGATATATAAG
AGAACAAAGGAGGTCTGGAAATAGAGCGGGCTTTTCTCGAGAAATCCTTT
TGTTCACAAGTTTGTTTTTGCCGTCACCGAGAAACCATAAACCACGTGAT
CTACAATAGTGGATTTCATTGGTTTAGAAAATTCAACAACCAATCAAATT
CGATCATGTGCACTACATAAACTGCACCTTGATCTTCCATTCCTCATTCG
TTCTTCGCAAGGAAGTACAGGCGAACCGTTACGTCGCAAAGTATATCCCT
GACTAAGTTTATCCACTTTTCAAAACTTTTCTTCTTTGATAACAAATCTC
AATCAACATGGTAAGTCCATCAGTTTTTTTCAGCCTTTTTGCCTACAGTT
TGGATCACTTCTACACAGGCCACAACTGACTTATCTTTGTAGACTCCTAT
CCTACAGATTTTAATCGTTTCTAATCGCTAAAGAAATTGCTTCATACCTA
ATCAAACTTCCCGTGATTTTTTTTTGCTTTGTTGTGGTCAAAATTCTTAG
AATTCTACTAGACAATGCAGTGTCTTCATTTTCATGGTGTTTAACTCGTC
ATGTGTCGTTTTGTTATGAAGACATTGCATTGCTTGATTTCAAATGGGGG
AGTGTGCCTTGTCTATCTAAGCAAAAATTTATAATCTCATTCAAATTTTC
CAGCGTGAATGTATCTCAGTCCATGTTGGCCAAGCTGGAACCCAAATTGG
TAATGCCTGCTGGGAATTGTACTGTTTGGAGCATGGAATCCAACCTGATG
GTCAAATGCCTTCAGACAAAACCATTGGAGGTGGAGATGATTCATTCAAC
ACTTTCTTCAGTGAAACTGGTGCCGGTAAACATGTCCCAAGAGCTGTTTT
CATGGATTTAGAACCAACTGTTGTCGGTATGTGGAAAAGATTATTTCCCA
AAATTATCTAGTATTGAAAGTAGAATGTCTCTGTGCTTCAGCTATGTCAT
CTTATCTGCCTGCGACTCAGCACTTTATCGCTCACTCATGTAAATTTATC
AGAAATTATTTAGTTCGAAGCTCCAATTTCGCTTAAAATAAATTTACCCT
TAGCTTTATGAAAAATTTCCAAACTGTAAAACCCATCAGATTATGTTATA
ATATATTTTTCAATAAGATAAGTAATTAAATTTTGTAATTGGAAATTCCA
CTATTGTACTCACTTTGAACAGGACTTTAAAAAACAGAGGTGATTATTTA
CTTGGTTGATGTGGGTTTTTTTAGCCTGGAAAATTTTATGTTGGTCAGAA
TTTAACTTTGTTTTATCCTTTTTCTTTTATAGATGAAATCAGAACTGGAA
CATACCGTCAACTTTTCCACCCTGAACAACTGATCACTGGTAAAGAAGAT
GCTGCCAACAATTACGCTCGTGGCCATTACACTGTTGGTAAAGAAATCAT
CGATCAAGTTTTGGACCGTACTAGAAAACTCGCTGATCAATGCACTGGTC
TTCAAGGATTTTTGATCTTCCACTCCTTCGGTGGTGGCACCGGATCTGGA
TTCACCTCCTTGTTGATGGAACGTCTTTCTGTCGATTATGGAAAGAAGTC
CAAATTAGAGTTTGCTGTCTACCCAGCTCCCCAAATCTCCACAGCTGTTG
TTGAACCATACAATTCTGTCTTGACCACCCACACCACATTGGAACACTCT
GACTGTGCATTCATGGTTGATAACGAAGCTATCTACGATATCTGCCGAAG
AAACCTCGACATTGAGCGCCCCACCTACACCAACTTGAACAGATTGATTG
GTCAAATTGTGTCATCTATCACTGCATCACTTCGGTTCGATGGGGCCCTA
AATGTTGACTTGACTGAATTTCAAACTAACTTGGTCCCATACCCACGTAT
CCATTTCCCATTGGCAACTTATGCTCCAGTTATCTCTGCAGAGAAAGCTT
ACCATGAACAGCTCACTGTCTCAGAGATCACTAATGCCTGTTTCGAACCA
GCTAACCAGATGGTCAAATGTGATCCACGACATGGTAAATACATGGCTTG
CTGCTTGCTCTACCGTGGTGATGTTGTCCCCAAAGATGTCAATGCTGCCA
TTGCTACTATCAAAACAAAACGTACAATCCAATTTGTTGACTGGTGCCCA
ACTGGATTCAAAGTTGGAATCAATTACCAACCGCCAACTGTTGTTCCAGG
AGGTGATCTTGCTAAAGTTCAACGTGCTGTTTGCATGTTGTCCAACACCA
CTGCTGTTGCTGAAGCATGGGCCCGTTTGGATCATAAATTTGATTTGATG
TACGCTAAACGTGCCTTTGTCCATTGGTATGTCGGTGAAGGTAAGGAAAA
CCAAATTTAAAATATTTTGATTTTGAAATTATGCACAATAAAAGGATATC
AAAATTGATTGTATTTTAATTTTAAGCTTAGCAATGTACTAAAATTATAA
AGTGCAAATCCAAAATCATTGAAAGTGATTATGCTGGCCACATTTTGAAA
TCACTGAACTATAAGTTTCATATCATTCTTTCCAGGTATGGAAGAAGGAG
AGTTTTCAGAAGCTCGTGAAGACATGGCAGCCTTGGAGAAAGATTACGAA
GAAGTCGGTGTTGATTCCATTGATGATGATGGAGAAGGCGAAGATGACGA
ATATTAAGGAGATCTCCCCTAAACTGAGATCCTTTTTACAGTTATTTACT
TGTAAGCAATATGTGTAAAAGAAATATGATGACATGAAAACAAAGATACA
AAAGACTGAAAATGATAAATTGAGACGTCGTTCAGTTCCTTTTTGTTTTG
AAATTTTTATACTTGATTCAATTTTAGGTCTTTTCTAATTTGTAAAATTT
TCGATTTGTTCTTTACTGAAGTCCGTTCCCAAAACATC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_011074XLOC_011074Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00019673-exon-sc0000333-1575043694:120425..120653TCONS_00019673-exon-sc0000333-1575043694:120425..120653Clytia hemisphaericaexon
TCONS_00019673-exon-sc0000333-1575043694:118978..119200TCONS_00019673-exon-sc0000333-1575043694:118978..119200Clytia hemisphaericaexon
TCONS_00019673-exon-sc0000333-1575043694:117564..118571TCONS_00019673-exon-sc0000333-1575043694:117564..118571Clytia hemisphaericaexon
TCONS_00019673-exon-sc0000333-1575043694:117016..117368TCONS_00019673-exon-sc0000333-1575043694:117016..117368Clytia hemisphaericaexon
TCONS_00019673-exon-sc0000333-1510915933:120425..120653TCONS_00019673-exon-sc0000333-1510915933:120425..120653Clytia hemisphaericaexon
TCONS_00019673-exon-sc0000333-1510915933:118978..119200TCONS_00019673-exon-sc0000333-1510915933:118978..119200Clytia hemisphaericaexon
TCONS_00019673-exon-sc0000333-1510915933:117564..118571TCONS_00019673-exon-sc0000333-1510915933:117564..118571Clytia hemisphaericaexon
TCONS_00019673-exon-sc0000333-1510915933:117016..117368TCONS_00019673-exon-sc0000333-1510915933:117016..117368Clytia hemisphaericaexon
TCONS_00019673-exon-sc0000333-1491911889:120425..120653TCONS_00019673-exon-sc0000333-1491911889:120425..120653Clytia hemisphaericaexon
TCONS_00019673-exon-sc0000333-1491911889:118978..119200TCONS_00019673-exon-sc0000333-1491911889:118978..119200Clytia hemisphaericaexon
TCONS_00019673-exon-sc0000333-1491911889:117564..118571TCONS_00019673-exon-sc0000333-1491911889:117564..118571Clytia hemisphaericaexon
TCONS_00019673-exon-sc0000333-1491911889:117016..117368TCONS_00019673-exon-sc0000333-1491911889:117016..117368Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000333supercontigsc0000333:117016..120653 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2658.67	2521.44	2779.48	3186.31	2301.19	2075.22	1245.24	1564.72	1257.47	1467.39	2033.54	1467.26	601.757	601.551	656.678	607.362	984.561	1064.29	641.956	639.631	916.398	1002.84	1465.97	1362.32	538.329	562.815	1596.36	1663.03	1238.11	1327.44
Blast
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BLAST of TCONS_00019673 vs. Swiss-Prot (Human)
Match: TBA1A (Tubulin alpha-1A chain OS=Homo sapiens GN=TUBA1A PE=1 SV=1)

HSP 1 Score: 863.218 bits (2229), Expect = 0.000e+0
Identity = 416/432 (96.30%), Postives = 429/432 (99.31%), Query Frame = 2 
Query:  227 MRECISVHVGQAGTQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGKHVPRAVFMDLEPTVVDEIRTGTYRQLFHPEQLITGKEDAANNYARGHYTVGKEIIDQVLDRTRKLADQCTGLQGFLIFHXXXXXXXXXXXXLLMERLSVDYGKKSKLEFAVYPAPQISTAVVEPYNSVLTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQLTVSEITNACFEPANQMVKCDPRHGKYMACCLLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAVAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDMAALEKDY 1522
            MRECIS+HVGQAG QIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGKHVPRAVF+DLEPTV+DE+RTGTYRQLFHPEQLITGKEDAANNYARGHYT+GKEIID VLDR RKLADQCTGLQGFL+FHSFGGGTGSGFTSLLMERLSVDYGKKSKLEF++YPAPQ+STAVVEPYNS+LTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQL+V+EITNACFEPANQMVKCDPRHGKYMACCLLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTA+AEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDMAALEKDY
Sbjct:    1 MRECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIIDLVLDRIRKLADQCTGLQGFLVFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFSIYPAPQVSTAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCLLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDMAALEKDY 432
The following BLAST results are available for this feature:
BLAST of TCONS_00019673 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
TBA1A0.000e+096.30Tubulin alpha-1A chain OS=Homo sapiens GN=TUBA1A P... [more]
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