TCONS_00019667 (transcript) - C. hemisphaerica

Overview
NameTCONS_00019667
Unique NameTCONS_00019667
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length3460

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00019667 ID=TCONS_00019667|Name=TCONS_00019667|organism=Clytia hemisphaerica|type=transcript|length=3460bp
ATTGAAAGCTTTAGTGATATTATTTGACAATTTGTTAgcggttcatttgt
tttgatagtTATGTGGGTCAAAAACACGATGACTGGAATAAGCGCTTGAA
TTACCTAACAGAGTAGCTCATGAACCAAAGTTCAAAGTGAAGGCGCAGAT
TAACGGGGAAAACTTCGAAGCAATCGGATTATCTAAGCAAAAAGCCAAAT
CGAAAGTTGCCGTTCTAGCGCTTCGGCAGCTTGGTTTCGGAAACATCCTT
GGAGAGGAGTTGACAGACGAGGGATACAGGAAAGAAGCACCCATTTGGAA
CTACGAACCTTTTGGAACTAAATCACcGATTGACTTGAATCTTTTGAACA
AGCAGAAATCGGAAAACCTCGACATTGATTTCACATCAGACAATACGGAA
TTTTTTGAATCTCAAATGCCCGGACGTGAGCGCGACGAACGACTCTTATA
CGCACCGCCGAGTTCCAGAAACTCCGGACTCGGTCCGTGGGGCTCTAACC
GCTATTCTCCGACATCCGGTTATGGTCGTAACGGCGGTAACGGTCAACGA
CCCGGTGTGGCTCACATTATGGGCCCCATGTCGCCGCCTCAGGCTGTTGC
TCACAAGTTTTCACAGCTGTTTTCCAACCGACCGGCAATCAATGTAGAGA
AAGCCCGGACGTTTCCGGTGATGGTGTTGAGTGAGATCTTTCCGGACATT
AAGATTGAGTGGACCGAGGGTTCGGGCCGTGGCGATCGACAGTTTAAAGT
CGAAGCAGAAGTGCAAGGCAGAAGATTCTTTGGCGAGGGTCGAAGCAAGA
AGATAGCGAAATTGAATCTTGCGAAAACCATCCTCTTGTGCATGTACGAT
ATACACGACTTCAAAGATGCCGTTGAAACCACCCCCAAATCATCTCAAAA
GAAAAGCACTGACCACGAGACACAGATGGAAAAGAAATTCCCGCTCACAC
AACTCAAAACTTTAGCCGGAGACGACTTGACGATCGACGTGCAGCAACAA
GACGAGCTGAACGATCAAGGAGAGAAGATCTTTATCGCGACCATCGTTGT
TCGTGGTGTCGCCTACGAAGCCATTGGTAAACACAAGAATCTCGCCCGCC
TCAGAGCCGCCAAGAAAGCTCTTGACTCACTCCGCCCAAAGAAGGAGGGC
GGTTCGGACAGCTCGTTGAACGATTCAATGAATTCGGACAGTGGACCGAA
AGAGGTCGATACCACACGCCATCCAACCATGGTTTTCTACGAAATGTATC
GCGACGTTCAGTTCAACTGTGAGGAAACGAAAGGCTCCAACGGTCTGAAC
GAATATCTTGTCGAAGCGGAGGTCGAAGGCAAGAAATACACCGGTAAAGC
GTGCTCTAAGAAGAAAGCCAAATTACGGCTTGTCTTGAATGCGTTTGAGG
ATTTACGTGATATACCGTTGGCGGAATGGAGCGGCATCGATTTGAATGAA
ACGATGGAAGACCGGACGCTTTCCAATAATCCGGCCGCCAATCATCCGAT
CGTCTTACTATTGAAATTGAACCCGCAGACACGGTTCGTCGTGACGGAAG
ACTACGATTGCGAGATTACGTCAAAATATAAAGCTATCGCCTACGTTGGT
GATCGGCAATTTAGCGGCGAGGGCCCTAATAAGAAATGCGCCAAAACAGT
GGCCGCGCGGGGCGCTCTACAAGAACTATTCGGTATTGACGCGGACAATT
ATGTCGAGGAAACAAGGAATGACATTTTTGAGGATAACGAACCGAAAAAG
GAAGTTCCGGTCGAATTATCCAACCGTATTGCGGACGCTGTTCAGAAGAA
ATTCTTAGAAGTCTTCCAAGGTGAAACACAGTGTAAAGTGATCGCCGCTT
TCGTTGTTGCCGATTGTCAAACGAGCATCGAGGAACCAGATTTGAGGGTG
GTTTCCATAGGAACGGGAACGAAATGCATTACGGGAGAAATGATCGACCA
CAAGGGACAAACGTTAAATGATTGCCACGGTGAGATCATCGCGTGTCGTG
GATTCCGTCGCTTCATGTTCGACGAACTCATCAAAGCTCTCAAAAGTGAC
GAAGATACTTTATTCGAACGCATCCCATCTACAAAGAAATATCGACTGAA
AGCTCAACATAAAATCTACCTTTTCGTGAACACGGCACCTTGCGGTGACG
GTCGCGTCTTCACGCTACAAACGCAACAACAACAAggcgccaaaaacaaa
acgGCAGGATTGCTTAGAACCAAAATCGAAAACGGTCAAGGAACCATTCC
AGTACCCGAGAATAACATTCAAACCAGTGATGGCATCCTTGAAGGTGAGC
GTCTCCGAACCATGTCATGCAGTGACAAAATCTTGAAATGGAATGCCCTT
GGTGTGCAAGGGGCCTTACTTAGTTACTTCATCGATCCAATCTACCTTGA
AGGAATTGTCATCGGTTTACACTACAACTACGACGCTCTTTGTCGCGCGC
TCTACAAACGTGCCATCAAGATGGATGATTGTCCCGGTGATTACAGGCTA
AATCGACCAGCTTTAGGCTCACCAAACAACATGGAGACTAGCCGGGATAC
TTCGAAAGCGACCAGCAACAGTTTCAACTGGTATCATCAAGAGAGAACGG
CAGAGGCGGTCAACGCCACAAACGGTAAAACGGTCATTTTAACGCCCTCT
CGACTTTGCAAGCTTAACTTCTTCGATAAGTTCATGCAAAGTTTGAAGCT
ACACCCTGACAGAGTTGAGCCTCGGACCTACCAATCGGCTAAATCGTATG
CAACAGATTaccaaaaaacaaaagaacttttcttcaaatCTCTTGAAGAT
ACCACGTGCGGGAAATGGATCGGAAAACCATACGAGCATGACATGTTCGG
TTATTAACCAATCATATTGCATAGATTTGACCACGTGATCACGTTTGAAC
CAATGAAATAACGTGATGTTTGTgttaatgaaatattttgcatgaaATGT
CACACGAGATTGTTTTAAGTAAGCCCTGCGTTGTGATTTCAAACAATGAC
TTTTAAAGACTATTTTAAGATcgaaaaagccaaaattagtttttttagaa
atatattATGATATGCTAGCTTCGTATTATTTAAATTGCCAGTGTACCCG
GTAAAAAGGGAATTTCTCGAATtgcgaaagtttttttaatttgaataatT
GTCAAAGTTATTGCTAAAAAGTCCAAAAGAGAATTTTTGCTGTGGTGTGA
TTGAAGCTCTTTTGAGCAAACCCTTTTGTAAATTTCCTAGGTTACCGGAC
ACACCATATATGAAAATCAAGGTTAACCATATAATAATCTAttatttcta
tatattttatTGCTACTagaatttttttagtatttttttctctgtttttt
ttGGCAATCTTTGTTTGTAAATAACTGCTCTTTTATTTAGAGTTTTAGGC
TATATTTTAAATGATGACTCGTATTTTTGGTTGAGAagaaaaatgtgaaa
cattCTAAAA
Run BLAST on NCBI

transcript from alignment at sc0000333:69121..83787-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00019667 ID=TCONS_00019667|Name=TCONS_00019667|organism=Clytia hemisphaerica|type=transcript|length=14667bp|location=Sequence derived from alignment at sc0000333:69121..83787- (Clytia hemisphaerica)
ATTGAAAGCTTTAGTGATATTATTTGACAATTTGTTAGCGGTTCATTTGT
TTTGATAGTTATGTGGGTCAAAAACACGATGACTGGAATAAGCGCTTGAA
TTACCTAACAGTAAGTCTAAACAATGAGTTTTTAAGCCAATTTGATAAAG
TAAGAAATTTTAGTGAATCAATTTTTATGCATTTAGGATGCCGCCTGTAG
AGGTAATAATTAGGGCTTTGATGGGTATCAACCTTCACTTCCCACTAATT
TTTGCTTCAGTAATTCAGGCCCGGCGGATTAACCGTAAAAGTGGAGGGGC
TAAACGATCAAAATGAGATTGAACTTTCCTCAAAAGCCCAGCCTCCCCGC
TTCTGCCGGGCCTGAGTAGACAGACTTAATCCATTAAGTTGCACTACACA
TCTTCTTGTATAAGAACATCCAAAAGCCTTTGAATGTACTGAATGACCTT
TTTTAGTTTTAATCCTAAAAATTTTTATATTTCCACCAGTCATTTCTACG
ATTTCCTAAGATATTGGATGGTAGTTTTGGAAACCATCACTTTCTACAAG
TAGGATCTTTGAAGTCCTGCCAAGGCAATCAGCAAACGGGTGCTCGATAC
GTTTCTTATAAGAACAAACTATATAAGAACATAAGGCGTCGATGGTCAAA
ACATTAAGAACATTAAGAACAACTGTAATGCTTCGCATAGGAAATACGCA
CAAAATGGTGAAAATAAGAACATTTTTAGGCTTAAAACTAAATAAGAGTT
AAGAACATCGTCATAGGCTTCAAAAAATTTGTATGTAGATCGATTTGTAT
GTCAGAACATTATCGCGAATGTGTTACGTGCGCCCTTGTAGAAATTTTCT
ACCGGTTTTACTTTGTTACGCAATTCCAAAAAGACACTGATGTCTCGGAC
ATTGTAATTTTTAAACCTGTAAATGTAAAATTACCTGATTTTATCTTCCA
CTCCTGGTTTTATGCCTTTTATTTGTTTAATTGTTTATCGTATTTTTTTG
CTGATTACAGCTCCTCTACTCAAAACTGCATAACTTTTACTTGAAAAATA
ACGGTATTATTAATCTTTGAGAACTTAGTCTAGAAGACGAACATTGTGGA
GAGTTTTAAAACCAAAGTTTACTGCAGTATTTTTCAAAAATATAATCCCG
ATTAATTTTCCAAATGATACAGTGCAGTCTTCATAACTCAAACAAGCACG
GGAAACACATACTAATTTGAGGAAAATTCAAGTTATGGAGTAAGTTTTAT
AAGGCATTGTTTAACTGAAGGGACATGAAAACGTGTTCGAGTTAAGGAAA
CATTAAGTTATAGAAGTTCGAGTTAAAGAGACTCTACTGTATTAGAAAGC
TGACTTGGTTGATTTGATTTTAAATAAGATAGACACATAGACACCGAATT
TGGCACCGAATTTGGGCACTCATGCCTGTTAACCTTCTTAGCTTCCTGGC
AGTTTTCAATAATCGAGTGTAGAAATTGGGTGTTCCAGTGTACCTATTCT
GTTACTTGTTTTTATATAAGAATGTTGTTTTTCAATTCTTAACTTTTTGG
GAAAAATCATCCTGAAATATTCTTACCATATTCTTAATTTTTTGGCCAAT
TTTATTATAAATATCCTTATAAAATATAATCTTTCGAAAAAAAGCGTGTA
AGCGAACCCCCGTTTATTTTCTAAACTCTCAGATTTGTAAGCGTGATACC
TTTTTAAAACCAAATGGACGGGGGTTTGATAAGAAAAGGTCTTTACTGAT
ATTAAAAAAAGTTAGGTCGAATTGAAGAGCGTGATTTTAAAGCTTAGTCT
CATTGTTGTCCAGGAGATCAAGCGAGAAAATCTTTACACTCTATGCTATT
GGTATTTCATGTGAGAGTGATCATAACTTATGCCCTTTTACATTTTTTTC
TATATGATATCTTTATACGTGACTTGACTGTCTTATCATTTTGTGACAAA
AAAGTCTAGTCTGTTTTTTGTGTTGTTTTTTTTGGTTAAAGTACTGAAAG
CTGTTGTTTTGATCGTAATTTGGTTCTTCGACAAGGTTTGATCTGTTATT
CATTTTCCAAATTTACTTTATTGGAGAAGGAGTCTATACCAGGCATTTGA
TAATGTCCATTATTGGTAAAAATCAAAAGTTGTAATATCTAGTTAGTTAA
CAAAGTAGGCAAATTTAGTTTGATAAGTCATTTTGGGTCCCGTCAGATGC
AATGTGAAGACTTTAAAACTAATATGGGTCTTGCTTTCTGAGAGACTCTT
CGACTGTTTTTGGCCCTTATCACAAGTCTACTACTTTTTGTCTGAGATTG
TATATTATTTTCGTATAGGAGATATTCCGTTCTTCCAAAAAATCGTTCAT
TTTGAAGCTACCACATCACTCAAACTTTTTTTAAGCTCACTTTTTTTTCG
GTCACGACCCGATCTTTTCTTCAAAATGAAGAGAATCAATATCGATTTTT
TTACTCGACGGTTAATGGCAAACTGAATTATCACGGACGAATTTGACATT
GGATATGTGTTCAAATTTAAGTAGAAATTTACTAAAACTTAATATTTAAG
TCACAATTTTTCGTGTTGGTTCCTTGTAGCTGTGATTCTTTAGTAGTGTT
CAACTAGGTGACTATTTTACGGAAAATTGCATTAAATAGGTGTGAATTGT
AATGGTTATTTGTTAAGTAACTTTACTTTAATAGGTTCCGGACGTATGAG
ATAATGTCACAAAGATTCAAAAGTGNTCGTGTTGGTTCTTTGTCGTAGCT
GTGATTCTTTAGTAGTGTTCAATAGGTGATTTACCGGGGATAACTATATT
ACGGAAAATTGCATTAAATAGGTGTGAATTCTAATGGTCATTTGTTAAGT
AACTTTACTTTAATAGGTTCCGGACGTATAAAATAAATTACAAAGATTCA
AAAGTAGCTCCTATATATCCTAACTTTTCTACTCAACTTCAAGAAAGCCT
CAAAAGGGTTATTCTGTGGTTTAAAACAGATTAAAATTTACAGAACTCTA
TCGTTCTTTTATTGAAATTGAATGGAAACGAAATTTTGTAACATTTTTGA
TTTTTTGTTGTAGACTTGTTTCAGTTTTTGACTACATATAGCTTCATCAT
GAAAATATTGTTCTTATAGTTTGGCTTTTAAACGATTGAATTTAAACTGA
AAGTTGTAAACCATGGCTTTTTGAATGGCTGGCATAAATTGATTCAGACC
TCGAAAGTGATTCCCCTAGCGCCATTCCTCATTTTACGATCACCCCTTTG
ATTATTATTATTATTATAGCTTAAGATTTTTTGCCAAAAGACTTTTACCA
AGAGCTTTTTCCCTTGTAAAAAACCTATACCGATGATTATGATGATGATT
TCACAATGTTAGCCAACCCTTATGCTATAAAGTTTCAAAGCTTCTAAGAG
TACCTTATGCCATAGTTTTATTTTTACAAGTGTTCCCGTTTCATATCAGG
ACAGTGTGCTTACACTATTGTTATATTATGCTAATATAAGCAAGAAAATG
TTTTTCTTTTCCTCTTTCTGACCAATCTTGCTCCACATCCGTGTCAATCC
AATGTGAAAAAGCTTTAAGTTTCAAAGCTTCTATGAGCAAGAAAACGAGA
AGGACAATACAGTTATAGTTAACATAGTTTTATCGTCTATTTTTTGTAAG
GAACCTCTCGAGAAATGTTTTGAGTAATTTTTTCTGACTGATGCAGGGAT
CTGTGTCCATGGCCAAAGAGAGATTCCAAGCTACAATCATAATCGTAATA
TTTGAGAAAAAATGGAAATTCCTACGAAATCTTATTACCACAAACGATTT
GGAAGCGCTCTAAATTAGGAAGGGTAGAGTTTTAACTCTGAGTTTTAACG
CTAGACTTAAAAGCTTAGGATCTAAGGAGCCAAAAGTTCAGGAATAGTCC
AATAGGGCTCAAAATATAGCTTGGAAGTCTATAAACCCCTCCCGAATTGA
AATACTCGAATAAATTTAACAATTATAGCCCAAAAGCGACTTTCTCGCCC
GATCTCCAAATTTCGAAAAACGATAAAATGAGCTAAGTCTTCAATAGATT
TTGACCATGATTATTTGCTTTCAAGTTTGATGGGAGTTTGATTCCTTGTT
AAAGATAATTGAATGATTTTCAAGTACCTGTACGCTGTCAGCTTAATATT
TTGGAAAATAAGTTGACCAAAATTAATTGGTTTTTAATTGATTTTAAATG
GTTTAAATTTTAGAGGTCTTTGGGAGTCGCCAAAGACATAGTCCCCTCAT
ACAATATGATTCAAAGTTTCAACAAAATAAAATTTTACCACATAACTTCT
CGATATATTATAATATCTCCTTTTACTTTGACTTTCCCCTTTTATTTTTG
ACTTTCCCATTTCTCATCTTAAAAACCACACCCATAAAATTGTTCAGTCT
CTTCCAGACCACAAGTGTAGGCTACGACTTATGTAGACTAGCCTCTCCAC
AAAACGTGGGCTAACTGAATCTCCCAGGCTAAACGCATTGTTGTAAATCG
TTATTATTATGTTCCAATATTCCAGGGCGAACTCCCACGAGAGTTCACGG
CTCATCGGATTTATGACCTCTAACCTTTTTCATTGTTAATAGTCCTTCTA
ATACTCTTTAAAATTTCAGTTGAAATGAGTTTTTACCACTTTTAACGTTA
GATCATTTCTTGAAACATTTATTGGGATTCTGTCGCCTAGACTACTGTAA
GTCGTCTACTCAAAGCCATATTTTTATATGTCCAGGCTGATTGATGACAT
TAGTTTTGGTATTTAACGTGGATAGCCTCTTGGTAAAGTCAGTCAGTCAC
CTTGTTGGCTAATGTTGGATACGACCGAACTCCTAATTTTTTAATGTTTT
CAATGTTTCATTTAAGCCGGAAAATCTTTGTAGTTGACAAAAAAGACTGT
TTTAGTTTTTATTTTAGAGTTCGGTCTTTGCATTTACTTGGTAATCTTTG
TAAATGAAAATGTAAATTAAATTTTCATACAAAGCGATGCTATTTTTATT
AGGAGGGTTAAAATTGAAAAATAACGATTCAAGTATCGGCAGTAAATTGG
TTTCAACTTTTGAAACGTTTTAGTTGGCTTGTTCACGTAAGGTTTAAAAG
AAATGTTTAAGAGCATGTTAAAGTCGTATTGTTTATAAAGGTGTAAACTC
TTTAAAGTCACGGATCAGTCAAGTAAAACCTATACATCAAAATGCGTTGA
CTTAAACTTTCATGAACAAAAGATAGGCTTTTTTTCTCTCTATTCAGTGG
GAGACTCACACCAACAGTTTAAGACGTTTTTAAAGAAGGTCTAAATAAGA
TTTGTGTCTTAAAAGTACGCCTTAAAGAAAATTCTATTCTATCACTTTCA
GTGAAATTCTCAAAAAATCAAAAAACCTCGTCTACTAGAAGTACGCTCTG
CGACTTTTCATAGTTTAGCGTGTGTTGAGAAAGTTCTCGGAAATTAGAAG
GATTTTAAATAAATTCTCCCTTTTTTAGTTTAAAGGCATTGGCTTTGGCT
TTCGGAATAACTTTGCTTGTCATGATTTTTTGCTACCTATCTGTTGTTTT
TAATTTCAACCAGTGACTAACTTCTTAAGTTTTTTAGGCGTTTCTGAATG
AGATATTACGCAGTTGACTCGAACTGCAACAGACTCGTGCCAATGCGACG
CAAAATTTATGAGTTTTAATGGTCGCGAGTCGGTCGACCATTAGTTCTTT
TTTAAATCATTTGCTCATCCGTAAAAATCAAGTCACAATCCAGATCCAAA
TGTAGTCGTGTGCAGTGGCATTTTAAATTTCAAATTAATTTTTGAGTGAT
ATTTTTAAAATTCGTTGCTCATCCAGCTACTTTAGTGGCAAGCTTACCTC
ACACAGTGCAATAATGAACATTTTAAATACATACTAACTTTATTTTTATA
ATAAACTTTCTTTAGCTGGGCCTGCATAATACCTCAAAAAGATTCGAGTA
ACTTCTCTTGTCTATTTTAACTTGATAATAAGTGTCCTTAGTATGGCCCG
ATTGTTGAGGGCTACACATACAACTTTATGATATAAATAAATATACTGTG
AGTATTAAAAGGTTGCCACGGACAGATTCGGCCAGCATTAACGGCAAATT
TAAGCGAACTAGCCAAAATAAACTTACTTTACAATGCTGTAACTTTTTGT
CCACGGAAGATACGAAAGTTCTGAACACAGATTTAAAATCTTATATCATG
ATTTTTGAACATGTAGAAAATATCTTTGTTTTTTCACAATCATCATTCTT
CTTCATTTTCCTAAAAATCTTTTGTCTTGTGAATTATTTTCCTTGGAAAT
ACCTACCCCAACGTTGTATGTATGCATGCTGTGAAATTCCCTGGGGGGGG
GGGGGGTACTTAAGCAAAATGGGTGCTTGGTATAGGGTGCGAGCGGTAAG
GGTCGGGTTTTTCAAAAATTCACGATTTTTGATTCAAATCTTTTTGATTT
CGAGAGAACAAATTGTAAAGAAGGGTAAGACTTTTTTCAAAAATCGAAGA
AAATTTTTCAAAAAAGTCTCTCTAAGGGTCAGCTTTTCGGCAAAAATCAG
TATCTCTAAGGGTCGATTTTCGGAGGTTCCGTCCGCACATACCCCTCATC
CGCCAACTTTAGTAGCCCCCCCCCCGAATGAAATTGTTAAAAAGGTGAAG
TGTTCACATAGTTTTGGGACGGACTTTGATGTTTTCAACTCATTTTACTT
TCATCCTACAGGAGTAGCTCATGAACCAAAGTTCAAAGTGAAGGCGCAGA
TTAACGGGGAAAACTTCGAAGCAATCGGATTATCTAAGCAAAAAGCCAAA
TCGAAAGTTGCCGTTCTAGCGCTTCGGCAGCTTGGTTTCGGAAACATCCT
TGGAGAGGAGTTGACAGACGAGGGATACAGGAAAGAAGCACCCATTTGGA
ACTACGAACCTTTTGGAACTAAATCACGTAAGTTAAAGGTTTTTTTTTTC
TATTCATGATATACATCACTGCAATGTCTTCGACATCCCACCATAGATCC
ATCAGCTGATTGGTTGTAAATGACATAAAATCAGTGAATACGTCACTCTT
GTAACCAATCAGGTGTTGGGTCCGTGATGTAATGTTAGAAGGTATTGCGC
AGATCACGAATAGGCCGCATATACTTTTTTCAATAAGTGTATTTTGAACA
TTCAAAGCCCAAATTCTGCATTCGGCGATGTTGTTCTGCAGAAAATAGAA
TAATAAGAATAAATAACGAACAACACTGCTAGTTTTCATTATATTATCAT
AATCTTCTTTTTAATTTTTGTTAGCGATTGACTTGAATCTTTTGAACAAG
CAGAAATCGGAAAACCTCGACATTGATTTCACATCAGACAATACGGAATT
TTTTGAATCTCAAATGCCCGGACGTGAGCGCGACGAACGACTCTTATACG
CACCGCCGAGTTCCAGAAACTCCGGACTCGGTCCGTGGGGCTCTAACCGC
TATTCTCCGACATCCGGTTATGGTCGTAACGGCGGTAACGGTCAACGACC
CGGTGTGGCTCACATTATGGGCCCCATGTCGCCGCCTCAGGCTGTTGCTC
ACAAGTTTTCACAGCTGTTTTCCAACCGACCGGCAATCAATGTAGAGAAA
GCCCGGACGTTTCCGGTGATGGTGTTGAGTGAGATCTTTCCGGACATTAA
GATTGAGTGGACCGAGGGTTCGGGCCGTGGCGATCGACAGTTTAAAGTCG
AAGCAGAAGTGCAAGGCAGAAGATTCTTTGGCGAGGTGTGTAGTATTTCA
TTTTTGAGTTCCCGCTCTATTTTACGAAATTTTTTATTGTGATTTAACTT
TTATGGTATTCATTACACATCCGTGGACGTCTGACACAGGTTAAAACATA
CGACGCCATATTTAGTAAAAGCAAGCAAGCCACTCTCTTTCGAAATTTCA
TTCCGTCATTTTTCAACGATAACTACGTATAGATAGCTTCGTGTCTAGCA
CAAAATGGTACTTGTTGCCACTCTGCTTAATGATCAGTAATTAAAGAGAA
GGATCAAGGGTAATTAGAGCAATCCAGGGCCAAAGAGCGGCGCCCTCCGC
TACCTTCGGTTAAAAAATTATCGAAAGAGGAGCCTTCAGGTCGCTTCCGA
TTGCGGTTGCACACTTAGTTACTTAAAAATATTTAACATTTTCCGTTCCA
TTTTGCAGGGTCGAAGCAAGAAGATAGCGAAATTGAATCTTGCGAAAACC
ATCCTCTTGTGCATGTACGATATACACGACTTCAAAGATGCCGTTGAAAC
CACCCCCAAATCATCTCAAAAGAAAAGCACTGACCACGAGACACAGATGG
AAAAGAAATTCCCGCTCACACAACTCAAAACTTTAGCCGGTAAGGATTCT
CTCAACGCAAAATAATCTCTACCAGAACAATTTTGGGGAAGGGGTTTTGA
TAGCCTTTTTAGTCGAGCTAACCAATCTAAGAATGATGGATGTCAGTCTA
TATAAGCGGGTGCTGCAGTTGCTGTTTTTGGCAGTGGTTGAATTTTTAAC
CGTTACATGATTGGAACATGGGAGAAACTTCATTTCTATTTGACCAACAA
AGTGAGATTACCATCTCGCGCTTACGTAGACCAGCCTTTATATTGACTCC
TTTTCGTATATCCCTTGTGTNCATCTCGCGCTTACGTAGACCAGCCTTTA
TATTGACTCCTTTTCGTATATCCCTCGTGCAATGGAATAAACAAAGAGCC
TGTAAGAAAAAATAACCTGACTTTTATTTCTCACTTCGTTCAGGAGACGA
CTTGACGATCGACGTGCAGCAACAAGACGAGCTGAACGATCAAGGAGAGA
AGATCTTTATCGCGACCATCGTTGTTCGTGGTGTCGCCTACGAAGCCATT
GGTAAACACAAGAATCTCGCCCGCCTCAGAGCCGCCAAGAAAGCTCTTGA
CTCACTCCGCCCAAAGAAGGAGGGCGGTTCGGACAGCTCGTTGAACGATT
CAATGAATTCGGACAGTGGACCGAAAGAGGTATTTTTATAACTTCGAATA
ATGAGCAACATCAACTAATCATAAATAGGGCGGGGCGTCAAATGTCAAAG
TCAGAAAATTCAAGATGTAGTGTTTTTTTATGAAAATTTAACCTATTGTG
AGGCATTCTGCGCAATTTTTAAGGTCAGAAGTTCAAAANNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCAAAA
TTGGCCGAACCCCCCTGGGGGTACTGATTCGCACTACAGGCAAAAATTGG
AAAAAATGGCATTTTCTGGCCTTTTCAGGCCTGTATATATGTCAAAACTA
TTGCAAATCTTATTTTTTTCACTTGCTGTACTAAATTTTATGAAGAAACA
ACAAAATAATCATATTGGATTAAAAACTGTGCCCATTAGAGCCCTAAACG
AGCCGTTTTAAGCCAATTTTGGGTAGCAAAATGCTTTTTAAGGCCAATTT
TGCAAGCTCATAAACTTTAAACTGATCGATTCACATGCCTGAAATTTTTA
GAGATGGAAGTCTTCAATAAAGTCTTTAAGCAAAATGAATTTCAAGTTTT
TCACTTATTTCAAAAATTCATAATGGCGTCTTCAAAATTCACTTTTTGGC
AAAAAAAAGTCATATTTCTCAAAAAATAGCATTTTTAAGGCAAGCTTCTA
CAAACTGAGTTTAAATGCTGACTGAAATTTTTTTTGCAGTGATAGTCTAC
TGGAGATACTCCAGGGAAATCAAAATAATTTGGGTCTGGGATGCGTCTAT
GTCCGCCATTATGGAAATAAAATTCCTGCTAAGAGCCATTTTTCAGGCAA
AAACCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGACATG
GGTCCAAATTTTCTTGCAGTGATAGTATTCTGGAAATACTACAGGAAAAT
CAAAGTCATCTGGGCTTGGGATTTGGGTATATCCACCATTTTGGAATTGA
AGTTCCTGCTAAAACGCAATATTCAATCAAAAATCCAATTTTTGACTCAA
AAAATCTTAAAAATGGCAATAGACATGAACCTAAAATCTTTTTGCAGTGA
TAGTCTTCTGGAAATACTCCAGGGAANNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNATCAAAATTGTTTGGGTTTAGGATTTGGGTATATCC
GCCATTATGGAATTGAAATATGTGTTAAAACTGGCTAAAATACAACGTTT
CAAGCAAAAGCCCCATTTTTGAATAAAAATTGCTCTAAAATGTCAATAGA
CATGGACCCAAATTTTTTTGAAGTGATAGTATTCTGTGAATATTCCTGGA
AAAACAAAATCATTTCGGTCTAAGATTTGTTTACATTCACCCTTATGGAA
ATGAAATCTCTGTTAAAATGCTACATATTTCCACCCGATACATCATAATT
GACTAAATATTTTGTATATTATATTAAGCAAAGAATGTGAATTTACAATC
CTTTAATTTAGAAATACTAGTTGAAATATATTATTAAAAAAATCCCATTT
CACTCAACAATTTTTTATAGCCCACTTACTTTTCCATTTTCAAGACTTGT
TCCGTCAAAAAAAGATTGAATTTTAGCTTGAAATATTATATACATTTTAA
AACTGGCTTCAGTTTCAAAATTGCGGTCCAAGAAGCATGTTATACCTGAA
CAGTTTTTACCCCTAGAGTATTTACAGAACACTATCACTGCAAAAAGATT
TTAGGTTCATGTCTATTGCCATATTAGAGCAGTTTTTAAGTCAATATGGG
ATTTTTGCTTGAAATGTTGCAATTTAGCCAGTTTTAACACATATTTCAAT
TCCATAATGGCGGTTATACCCAAATCCTAAACCCAAACAATTTTGATTTC
CCTGGAGTATCTCCAGTATACTATCACTGCAAAAAAAATTTCAGTCAGCA
TTTAAACTCAGTTTGTAGAAGCTTGCCTTAAAAAATGCTATTTTTTGAGA
AATATGATTTTTTTTTGCTAAAAAGCAATATTTGAAGACGCCATTATGAT
TTTTTGAAAAAAGTGAAAAACTTGAAATTCATTTTGCTTAGAGACTTTAT
TGAAGACTTTCATCTCTAAAAATTTCAGGCATGTGAATCGATCAGTTTAA
AGTTTATGAGCTTGCAAAATTGGCCTTAAAAAGCATTTTGCTACCCAAAA
TTGGCTTAAAACGGCTCGTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNGCAGAATGCCTCACAATAGGTTAAATTTTCAT
AAAAAAACACTACATCTTGAATTTTCTGACTTTGCCCCAAAAATGACTGT
TGACGCCCTACCCTATCATAAACAATTGAACATTGTCATTCTAGCTCGTA
ATGATATCCCAAATTTAAGGGTATAGAATCGCAATCGAGTCACGCGCCTT
TTAGGGTTTCCAAAACTTAAGAGACATAAAAAAGTAATTTCAAGTTACAG
GTGTTCGAGTTATGTAGGGTTCTCTGTATTTACTCAAAACAATTTCTGGC
AAATCGTATTGTTATGTAGTTTTTTTTTTCGCTTTAACTTTTAAGTCTAA
ATATATATGTTTTTCGAGACTTGAAATATGGTTTGCCATGTAAAGGGATA
GTTTTTGTCAAAATTGACCGTTACTCTCTTTACTCTCTTTAGGTCGATAC
CACACGCCATCCAACCATGGTTTTCTACGAAATGTATCGCGACGTTCAGT
TCAACTGTGAGGAAACGAAAGGCTCCAACGGTCTGAACGAATATCTTGTC
GAAGCGGAGGTCGAAGGCAAGAAATACACCGGTAAAGCGTGCTCTAAGAA
GAAAGCCAAATTACGGCTTGTCTTGAATGCGTTTGAGGATTTACGTGATA
TACCGTTGGCGGAATGGAGCGGCATCGATTTGAATGAAACGATGGAAGAC
CGGACGCTTTCCAATAATCCGGCCGCCAATCATCCGATCGTCTTACTATT
GAAATTGAACCCGCAGACACGGTTCGTCGTGACGGAAGACTACGATTGCG
AGATTACGTCAAAATATAAAGCTATCGCCTACGTTGGTGATCGGCAATTT
AGCGGCGAGGGCCCTAATAAGAAATGCGCCAAAACAGTGGCCGCGCGGGG
CGCTCTACAAGAACTATTCGGTATTGACGCGGACAATTATGTCGAGGAAA
CAAGGAATGACATTTTTGAGGATAACGAACCGAAAAAGGAAGTTCCGGTC
GAATTATCCAACCGTATTGCGGACGCTGTTCAGAAGAAATTCTTAGAAGT
CTTCCAAGGTGAAACACAGTGTAAAGTGATCGCCGCTTTCGTTGTTGCCG
ATTGTCAAACGAGCATCGAGGAACCAGATTTGAGGGTGGTTTCCATAGGA
ACGGGAACGAAATGCATTACGGGAGAAATGATCGACCACAAGGGACAAAC
GTTAAATGATTGCCACGGTGAGATCATCGCGTGTCGTGGATTCCGTCGCT
TCATGTTCGACGAACTCATCAAAGCTCTCAAAAGTGACGAAGATACTTTA
TTCGAACGCATCCCATCTACAAAGAAATATCGACTGAAAGCTCAACATAA
AATCTACCTTTTCGTGAACACGGCACCTTGCGGTGACGGTCGCGTCTTCA
CGCTACAAACGCAACAACAACAAGGCGCCAAAAACAAAACGGCAGGATTG
CTTAGAACCAAAATCGAAAACGGTCAAGGTAGATAATGATTTTTTTTTTT
TTTTATATTTTACATCTTCACGGTGAAAATCTCCTATCTTTGTGAGAAAA
AAATCAACTTTTTGCCCTGAATTGTAAAATATTAAAATTTTACTCACTGA
ATTCTGGATAAAGTCTTAATATTTTTTCGTGACATTTGAGTTGAAATTGA
ATACGTATGCTAAGATTATTAATAGGAATAATTTTAAGTGTCTCAAATTC
AAATGGCTAGGACAAAATGTTTCTTTGGCAAAAATGATCAGCTCTTGACT
TCTTTTAAAAGACTCTCTGTCAAATGAATTTCTTTCTGGTTTTACAGGAA
CCATTCCAGTACCCGAGAATAACATTCAAACCAGTGATGGCATCCTTGAA
GGTGAGCGTCTCCGAACCATGTCATGCAGTGACAAAATCTTGAAATGGAA
TGCCCTTGGTGTGCAAGGGGCCTTACTTAGTTACTTCATCGATCCAATCT
ACCTTGAAGGAATTGTCATCGGTTTACACTACAACTACGACGCTCTTTGT
CGCGCGCTCTACAAACGTGCCATCAAGATGGATGATTGTCCCGGTGATTA
CAGGCTAAATCGACCAGCTTTAGGCTCACCAAACAACATGGAGACTAGCC
GGGATACTTCGAAAGCGACCAGCAACAGTTTCAACTGGTATCATCAAGAG
AGAACGGCAGAGGCGGTCAACGCCACAAACGGTAAAACGGTCATTTTAAC
GCCCTCTCGACTTTGCAAGCTTAACTTCTTCGATAAGTTCATGCAAAGTT
TGAAGCTACACCCTGACAGAGTTGAGCCTCGGACCTACCAATCGGCTAAA
TCGTATGCAACAGATTACCAAAAAACAAAAGAACTTTTCTTCAAATCTCT
TGAAGATACCACGTGCGGGAAATGGATCGGAAAACCATACGAGCATGACA
TGTTCGGTTATTAACCAATCATATTGCATAGATTTGACCACGTGATCACG
TTTGAACCAATGAAATAACGTGATGTTTGTGTTAATGAAATATTTTGCAT
GAAATGTCACACGAGATTGTTTTAAGTAAGCCCTGCGTTGTGATTTCAAA
CAATGACTTTTAAAGACTATTTTAAGATCGAAAAAGCCAAAATTAGTTTT
TTTAGAAATATATTATGATATGCTAGCTTCGTATTATTTAAATTGCCAGT
GTACCCGGTAAAAAGGGAATTTCTCGAATTGCGAAAGTTTTTTTAATTTG
AATAATTGTCAAAGTTATTGCTAAAAAGTCCAAAAGAGAATTTTTGCTGT
GGTGTGATTGAAGCTCTTTTGAGCAAACCCTTTTGTAAATTTCCTAGGTT
ACCGGACACACCATATATGAAAATCAAGGTTAACCATATAATAATCTATT
ATTTCTATATATTTTATTGCTACTAGAATTTTTTTAGTATTTTTTTCTCT
GTTTTTTTTGGCAATCTTTGTTTGTAAATAACTGCTCTTTTATTTAGAGT
TTTAGGCTATATTTTAAATGATGACTCGTATTTTTGGTTGAGAAGAAAAA
TGTGAAACATTCTAAAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_011073XLOC_011073Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00019667-exon-sc0000333-1575043694:83678..83787TCONS_00019667-exon-sc0000333-1575043694:83678..83787Clytia hemisphaericaexon
TCONS_00019667-exon-sc0000333-1575043694:76861..77076TCONS_00019667-exon-sc0000333-1575043694:76861..77076Clytia hemisphaericaexon
TCONS_00019667-exon-sc0000333-1575043694:76053..76513TCONS_00019667-exon-sc0000333-1575043694:76053..76513Clytia hemisphaericaexon
TCONS_00019667-exon-sc0000333-1575043694:75449..75629TCONS_00019667-exon-sc0000333-1575043694:75449..75629Clytia hemisphaericaexon
TCONS_00019667-exon-sc0000333-1575043694:74809..75044TCONS_00019667-exon-sc0000333-1575043694:74809..75044Clytia hemisphaericaexon
TCONS_00019667-exon-sc0000333-1575043694:70660..71695TCONS_00019667-exon-sc0000333-1575043694:70660..71695Clytia hemisphaericaexon
TCONS_00019667-exon-sc0000333-1575043694:69121..70340TCONS_00019667-exon-sc0000333-1575043694:69121..70340Clytia hemisphaericaexon
TCONS_00019667-exon-sc0000333-1510915933:83678..83787TCONS_00019667-exon-sc0000333-1510915933:83678..83787Clytia hemisphaericaexon
TCONS_00019667-exon-sc0000333-1510915933:76861..77076TCONS_00019667-exon-sc0000333-1510915933:76861..77076Clytia hemisphaericaexon
TCONS_00019667-exon-sc0000333-1510915933:76053..76513TCONS_00019667-exon-sc0000333-1510915933:76053..76513Clytia hemisphaericaexon
TCONS_00019667-exon-sc0000333-1510915933:75449..75629TCONS_00019667-exon-sc0000333-1510915933:75449..75629Clytia hemisphaericaexon
TCONS_00019667-exon-sc0000333-1510915933:74809..75044TCONS_00019667-exon-sc0000333-1510915933:74809..75044Clytia hemisphaericaexon
TCONS_00019667-exon-sc0000333-1510915933:70660..71695TCONS_00019667-exon-sc0000333-1510915933:70660..71695Clytia hemisphaericaexon
TCONS_00019667-exon-sc0000333-1510915933:69121..70340TCONS_00019667-exon-sc0000333-1510915933:69121..70340Clytia hemisphaericaexon
TCONS_00019667-exon-sc0000333-1491911889:83678..83787TCONS_00019667-exon-sc0000333-1491911889:83678..83787Clytia hemisphaericaexon
TCONS_00019667-exon-sc0000333-1491911889:76861..77076TCONS_00019667-exon-sc0000333-1491911889:76861..77076Clytia hemisphaericaexon
TCONS_00019667-exon-sc0000333-1491911889:76053..76513TCONS_00019667-exon-sc0000333-1491911889:76053..76513Clytia hemisphaericaexon
TCONS_00019667-exon-sc0000333-1491911889:75449..75629TCONS_00019667-exon-sc0000333-1491911889:75449..75629Clytia hemisphaericaexon
TCONS_00019667-exon-sc0000333-1491911889:74809..75044TCONS_00019667-exon-sc0000333-1491911889:74809..75044Clytia hemisphaericaexon
TCONS_00019667-exon-sc0000333-1491911889:70660..71695TCONS_00019667-exon-sc0000333-1491911889:70660..71695Clytia hemisphaericaexon
TCONS_00019667-exon-sc0000333-1491911889:69121..70340TCONS_00019667-exon-sc0000333-1491911889:69121..70340Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000333supercontigsc0000333:69121..83787 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	2.321e-05	0.00551849	0.220938	1.15242	0	0.627265	0.00356498	3.365e-07	0.656547	1.94949e-06	4.81088e-07	0	6.63113	4.92162	0.143656	0.078867	8.68051	6.04105	1.42973	4.93879	25.7581	4.00623	0	0.000160915	7.42217e-06	0
Blast
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BLAST of TCONS_00019667 vs. Swiss-Prot (Human)
Match: RED1 (Double-stranded RNA-specific editase 1 OS=Homo sapiens GN=ADARB1 PE=1 SV=1)

HSP 1 Score: 266.929 bits (681), Expect = 1.405e-75
Identity = 182/523 (34.80%), Postives = 265/523 (50.67%), Query Frame = 2 
Query: 1484 AANHPIVLLLKLNPQTRFVVTEDYDCEITSKYKAIAYVGDRQF-SGEGPNKKCAKTVAARGALQELFGIDADNYVEETRNDIFEDNEPKKEVPVELSNRIADAVQKKFLEVFQGET--------QCKVIAAFVVADCQTSIEEPDLRVVSIGTGTKCITGEMIDHKGQTLNDCHGEIIACRGFRRFMFDELIKALKSDED---TLFERIPSTKKYRLKAQHKIYLFVNTAPCGDGRVFT------------------------LQ-----------TQQQQGA----------KNKTAGLLRTKIENGQGTIPVPEN-NIQTSDGILEGERLRTMSCSDKILKWNALGVQGALLSYFIDPIYLEGIVIGLHYNYDALCRALYKRAIKMDDCPGDYRLNRPALGSPNNMETSRDTSKATSNSFNWYHQERTAEAVNATNGKTVILTPSRLCKLNFFDKFMQ------SLKLHPDRVEPRTYQSAKSYATDYQKTKELFFKSLEDTTCGKWIGKPYEHDMFGY*P 2860
            +  +P+++L +L P  ++    +   E  +K   ++ V D QF  G G NKK AK  AA+ AL  +F +  D     +R  I     P + + + L   +ADAV +  L  F   T        + KV+A  V+    T  +  D +V+S+ TGTKCI GE +  +G  LNDCH EII+ R   RF++ +L   L + +D   ++F++      +RLK   + +L+++T+PCGD R+F+                        LQ           T   QGA            K  G LRTKIE+G+GTIPV  N +IQT DG+L+GERL TMSCSDKI +WN +G+QG+LLS F++PIY   I++G  Y+ D L RA+Y+R   ++D P  Y LN+P L   +N E +R   KA + S NW   +   E +NAT GK  +   SRLCK   + ++M+      S  L     +P  Y  +K  A +YQ  K   F +      G W+ KP E D F   P
Sbjct:  232 SGKNPVMILNELRPGLKYDFLSE-SGESHAKSFVMSVVVDGQFFEGSGRNKKLAKARAAQSALAAIFNLHLDQ--TPSRQPI-----PSEGLQLHLPQVLADAVSRLVLGKFGDLTDNFSSPHARRKVLAGVVMT---TGTDVKDAKVISVSTGTKCINGEYMSDRGLALNDCHAEIISRRSLLRFLYTQLELYLNNKDDQKRSIFQK-SERGGFRLKENVQFHLYISTSPCGDARIFSPHEPILEGSRSYTQAGVQWCNHGSLQPRPPGLLSDPSTSTFQGAGTTEPADRHPNRKARGQLRTKIESGEGTIPVRSNASIQTWDGVLQGERLLTMSCSDKIARWNVVGIQGSLLSIFVEPIYFSSIILGSLYHGDHLSRAMYQRISNIEDLPPLYTLNKPLLSGISNAE-ARQPGKAPNFSVNWTVGDSAIEVINATTGKDELGRASRLCKHALYCRWMRVHGKVPSHLLRSKITKPNVYHESKLAAKEYQAAKARLFTAFIKAGLGAWVEKPTEQDQFSLTP 741
The following BLAST results are available for this feature:
BLAST of TCONS_00019667 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
RED11.405e-7534.80Double-stranded RNA-specific editase 1 OS=Homo sap... [more]
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