TCONS_00019661 (transcript) - C. hemisphaerica

Overview
NameTCONS_00019661
Unique NameTCONS_00019661
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length615

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00019661 ID=TCONS_00019661|Name=TCONS_00019661|organism=Clytia hemisphaerica|type=transcript|length=615bp
CCAGGTGCATCTTGCTAGCTGGCTGACTGTTTATTATTTCAATTCTTAGT
CTGTTAAATATAAAATCTATAAAACACGCAATTAAAagacaattcaagat
ggcagacGCAACTTTATTATCCATGGACAATCCGGTCTTCAAATAATTTG
GTTTTTATGCAATGGTTGTCATCTTGAAAATGTTTGTGGTCCAGTTGAGT
GTTCCATATAGACGAATCACAAGAAAGAGTTTTTCCACACCCGAAGATAT
CAAAATGAACGATCCATCAGGAAAAttgaaagttatcaaaaatgatGATG
TGGTTGAACGACACAGATCaGTTCATTTGAATGACATGGAAAACATCATC
CCGTTTGTTTTGGTTGGCTTGTTCTACGTCGCAACAAATCCTGCAGCTTC
TACCGCCATCTTGCTTTTCCGTATTTTCACTGGATCCAGAATAGTACATT
CTATTGTTTACCTGGGCCAAGTTCCACAACCAGCACGTGCTTTGTCTTTC
TTCGTGAGCATGACCGTGAATTGTGTCATGGCCATTTTTACCTTACAAGC
AttcctttgaaaaagaatgaagaTAAAGGATCAGCTTTGACCGGAGAAAA
TACTTTTTGTAGCac
Run BLAST on NCBI

protein sequence of TCONS_00019661-protein

>TCONS_00019661-protein ID=TCONS_00019661-protein|Name=TCONS_00019661-protein|organism=Clytia hemisphaerica|type=polypeptide|length=132bp
MVVILKMFVVQLSVPYRRITRKSFSTPEDIKMNDPSGKLKVIKNDDVVER
HRSVHLNDMENIIPFVLVGLFYVATNPAASTAILLFRIFTGSRIVHSIVY
LGQVPQPARALSFFVSMTVNCVMAIFTLQAFL
Run BLAST on NCBI

transcript from alignment at sc0000333:310412..311838+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00019661 ID=TCONS_00019661|Name=TCONS_00019661|organism=Clytia hemisphaerica|type=transcript|length=1427bp|location=Sequence derived from alignment at sc0000333:310412..311838+ (Clytia hemisphaerica)
CCAGGTGCATCTTGCTAGCTGGCTGACTGTTTATTATTTCAATTCTTAGT
CTGTTAAATATAAAATCTATAAAACACGCAATTAAAagacaattcaagat
ggcagacGCAACTTTATTATCCATGGACAATCCGGTCTTCAAATAATTTG
GTTTTTATGCAATGGTTGTCATCTTGAAAATGTTTGTGGTCCAGTTGAGT
GTTCCATATAGACGAATCACAAGAAAGGTATATAAGCTTTattaagaaca
atgaggctcaaaatagtttggagccttcggatgttctttgagtggttttg
agcctaaaagcattctaaacatgttcttactttcaccattttgtgactaa
ttttgtccattttgtccggcggaacaaccgttaaaGTGGGGAAGCTGAAA
GGTCAAAAggagataaaattcgctagaaaattaagaaaaaaatctcaatt
gCTCAAAAATGGGGAGACTGAAGTCTcaccagtctccccgcttccgacGG
GCCTGCTAAGTTTCAAGGTTTGCGACCCGAttaaaatgatacaaaataat
tcTATCTCCCATACCTGAAGTTAACACATGTGACCTTGTTCTCAACCCAA
AACCTAATTCTTTTTCATTCACCAGAGTTTTTCCACACCCGAAGATATCA
AAATGAACGATCCATCAGGAAAAttgaaagttatcaaaaatgatGATGTG
GTTGAACGACACAGATCGTAAGTGTACACCActtttcatgatatgcacca
ctacaATAAGAAAGAGCAACTTTTCTGTCCCTCCCTTCAACGAAATTGTG
AAACTTTTTTCTGACCTTGACTGCTCACAGGGAATACCTTTAACGGTGGC
AATGGGAAGACACCCCTGTTTAGCGGACCCGCTGGCAATTgaccaataaa
atttctatccccattgggattttaataagaatttttatccccgctgagGA
AAAGAGTTCCACCgaggctgcgagacaggggtgtgggAAGGAATGTTCAG
CTAAGGAGGATCCCTGCTTGCTCGTCTAAAAAGAATTTGATCAAATCTTT
GtcaccaaattttcaaaaaacctgACTCGACTCTTTCAAAAACTAACGCA
TTCTTTACCCctgatttttctttaatttcagaGTTCATTTGAATGACATG
GAAAACATCATCCCGTTTGTTTTGGTTGGCTTGTTCTACGTCGCAACAAA
TCCTGCAGCTTCTACCGCCATCTTGCTTTTCCGTATTTTCACTGGATCCA
GAATAGTACATTCTATTGTTTACCTGGGCCAAGTTCCACAACCAGCACGT
GCTTTGTCTTTCTTCGTGAGCATGACCGTGAATTGTGTCATGGCCATTTT
TACCTTACAAGCAttcctttgaaaaagaatgaagaTAAAGGATCAGCTTT
GACCGGAGAAAATACTTTTTGTAGCac

Coding sequence (CDS) from alignment at sc0000333:310412..311838+

>TCONS_00019661 ID=TCONS_00019661|Name=TCONS_00019661|organism=Clytia hemisphaerica|type=CDS|length=1197bp|location=Sequence derived from alignment at sc0000333:310412..311838+ (Clytia hemisphaerica)
ATGGTTGTCATCTTGAAAATGTTTGTGGTCCAGTTGAGTGTTCCATATAG
ACGAATCACAAGAAAGAGTTTTTCCACACCCGAAGATATCAAAATGAACG
ATCCATCAGGAAAAttgaaagttatcaaaaatgatGATGTGGTTGAACGA
CACAGATCaGTTCATTTGAATGACATGGAAAACATCATCCCGTTTGTTTT
GGTTGGCTTGTTCTACGTCGCAACAAATCCTGCAGCTTCTACCGCCATCT
TGCTTTTCCGTATTTTCACTGGATCCAGAATAGTACATTCTATTGTTTAC
CTGGGCCAAGTTCCACAACCAGCACGTGCTTTGTCTTTCTTCGTGAGCAT
GACCGTGAATTGTGTCATGGCCATTTTTACCTTACAAGCAttcctttgaA
TGGTTGTCATCTTGAAAATGTTTGTGGTCCAGTTGAGTGTTCCATATAGA
CGAATCACAAGAAAGAGTTTTTCCACACCCGAAGATATCAAAATGAACGA
TCCATCAGGAAAAttgaaagttatcaaaaatgatGATGTGGTTGAACGAC
ACAGATCaGTTCATTTGAATGACATGGAAAACATCATCCCGTTTGTTTTG
GTTGGCTTGTTCTACGTCGCAACAAATCCTGCAGCTTCTACCGCCATCTT
GCTTTTCCGTATTTTCACTGGATCCAGAATAGTACATTCTATTGTTTACC
TGGGCCAAGTTCCACAACCAGCACGTGCTTTGTCTTTCTTCGTGAGCATG
ACCGTGAATTGTGTCATGGCCATTTTTACCTTACAAGCAttcctttgaAT
GGTTGTCATCTTGAAAATGTTTGTGGTCCAGTTGAGTGTTCCATATAGAC
GAATCACAAGAAAGAGTTTTTCCACACCCGAAGATATCAAAATGAACGAT
CCATCAGGAAAAttgaaagttatcaaaaatgatGATGTGGTTGAACGACA
CAGATCaGTTCATTTGAATGACATGGAAAACATCATCCCGTTTGTTTTGG
TTGGCTTGTTCTACGTCGCAACAAATCCTGCAGCTTCTACCGCCATCTTG
CTTTTCCGTATTTTCACTGGATCCAGAATAGTACATTCTATTGTTTACCT
GGGCCAAGTTCCACAACCAGCACGTGCTTTGTCTTTCTTCGTGAGCATGA
CCGTGAATTGTGTCATGGCCATTTTTACCTTACAAGCAttcctttga
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_011068XLOC_011068Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00019661-proteinTCONS_00019661-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00019661-exon-sc0000333-1491911889:310412..310638TCONS_00019661-exon-sc0000333-1491911889:310412..310638Clytia hemisphaericaexon
TCONS_00019661-exon-sc0000333-1510915933:310412..310638TCONS_00019661-exon-sc0000333-1510915933:310412..310638Clytia hemisphaericaexon
TCONS_00019661-exon-sc0000333-1575043694:310412..310638TCONS_00019661-exon-sc0000333-1575043694:310412..310638Clytia hemisphaericaexon
TCONS_00019661-exon-sc0000333-1491911889:311037..311128TCONS_00019661-exon-sc0000333-1491911889:311037..311128Clytia hemisphaericaexon
TCONS_00019661-exon-sc0000333-1510915933:311037..311128TCONS_00019661-exon-sc0000333-1510915933:311037..311128Clytia hemisphaericaexon
TCONS_00019661-exon-sc0000333-1575043694:311037..311128TCONS_00019661-exon-sc0000333-1575043694:311037..311128Clytia hemisphaericaexon
TCONS_00019661-exon-sc0000333-1491911889:311543..311838TCONS_00019661-exon-sc0000333-1491911889:311543..311838Clytia hemisphaericaexon
TCONS_00019661-exon-sc0000333-1510915933:311543..311838TCONS_00019661-exon-sc0000333-1510915933:311543..311838Clytia hemisphaericaexon
TCONS_00019661-exon-sc0000333-1575043694:311543..311838TCONS_00019661-exon-sc0000333-1575043694:311543..311838Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000333supercontigsc0000333:310412..311838 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
13.1546	17.2134	12.4981	11.2915	2.58976	2.10463	25.2016	23.9302	16.709	22.1443	16.6071	17.6566	26.2319	19.9785	21.6304	31.3008	31.129	37.9875	24.8298	21.4411	53.5194	52.7164	27.9843	28.5264	15.5624	14.8758	63.7581	52.4721	23.7222	22.1671
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR001129Membr-assoc_MAPEG
IPR023352MAPEG-like_dom
Blast
[Close]
BLAST of TCONS_00019661 vs. Swiss-Prot (Human)
Match: MGST1 (Microsomal glutathione S-transferase 1 OS=Homo sapiens GN=MGST1 PE=1 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 1.581e-38
Identity = 68/146 (46.58%), Postives = 91/146 (62.33%), Query Frame = 3 
Query:  123 MDNPVFK*FGFYAMVVILKMFVVQLSVPYRRITRKSFSTPED-IKMNDPSGKLKVIKNDDVVERHRSVHLNDMENIIPFVLVGLFYVATNPAASTAILLFRIFTGSRIVHSIVYLGQVPQPARALSFFVSMTVNCVMAIFTLQAFL 557
            MD+ VF  F  YA +++ KM ++  +  + R+TRK F+ PED +         K ++ DD VER R  HLND+ENIIPF+ +GL Y  + P  STAIL FR+F G+RI H+I YL  +PQP RALSFFV   V   MA   L++ L
Sbjct:    8 MDDEVFMAFASYATIILSKMMLMSTATAFYRLTRKVFANPEDCVAFGKGENAKKYLRTDDRVERVRRAHLNDLENIIPFLGIGLLYSLSGPDPSTAILHFRLFVGARIYHTIAYLTPLPQPNRALSFFVGYGVTLSMAYRLLKSKL 153
The following BLAST results are available for this feature:
BLAST of TCONS_00019661 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
MGST11.581e-3846.58Microsomal glutathione S-transferase 1 OS=Homo sap... [more]
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