TCONS_00019660 (transcript) - C. hemisphaerica

Overview
NameTCONS_00019660
Unique NameTCONS_00019660
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length838

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00019660 ID=TCONS_00019660|Name=TCONS_00019660|organism=Clytia hemisphaerica|type=transcript|length=838bp
CTTCCACAGAGCTCTATTAGGATTATAGAAACGGAAAACTTTCATGGTAT
ATTGCTAGCTGGCTGactattaatttttttaattcctaGTCTGTTAAATA
TAAAATCTATAAAACACACAATTAAAAGACACTTCAAGATGGCAGATGCA
ACTTTGTTATCCATGGACAATCCTGTCTTCAAAGCATTTGGTTTTTATGC
AATGGTTGTCATCTTAAAAATGTTTGTGGTACAGTTGAGTGTTCCATATA
GACGAATCACAAGGAAGAGTTTTTCCACACCCGAAGATATCAAAATGAAC
GATCCATCAGGAAAAttgaaagttatcaaaaatgatGATGTGGTTGAACG
ACACAGATCGGCTCATTTGAATGACATGGAAAATATCATCCCCTTTGTGC
TGGTTGGTTTATTCTACGTTGCAACAAATCCTGCAGCTTCTACCGCCATC
TTGCTTTTCCGTATTTTCACTGGATCCAGAATAGTACATTCGATTGTTTA
CCTGGGCCAAGTTCCACAACCAGCACGTGCTTTGTCTTTCTTCGTGAGCA
TGATTGTAAATTGTGTCATGGCCATTTTTACCTTACAAGCAttcctttga
aaaagaatgaagaTAAAGGATCGGCTTTGACcggaaaaaatactttttgt
agcacgttttttttatttgaaagcatAAAATGGTTATATGTAACAATTAG
GGAATTTTTGTCTtagttatttttaaatttggagAGTGAGATCTAGAAAT
TCTTCTATTATTTGCGCACTCAGCACTTTTTAGATTGAAAGAAAATCTTC
TACACCTTCATGTCAAGGTTCCTTTGTTAATACTGCTG
Run BLAST on NCBI

protein sequence of TCONS_00019660-protein

>TCONS_00019660-protein ID=TCONS_00019660-protein|Name=TCONS_00019660-protein|organism=Clytia hemisphaerica|type=polypeptide|length=153bp
MADATLLSMDNPVFKAFGFYAMVVILKMFVVQLSVPYRRITRKSFSTPED
IKMNDPSGKLKVIKNDDVVERHRSAHLNDMENIIPFVLVGLFYVATNPAA
STAILLFRIFTGSRIVHSIVYLGQVPQPARALSFFVSMIVNCVMAIFTLQ
AFL
Run BLAST on NCBI

transcript from alignment at sc0000333:306957..308816+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00019660 ID=TCONS_00019660|Name=TCONS_00019660|organism=Clytia hemisphaerica|type=transcript|length=1860bp|location=Sequence derived from alignment at sc0000333:306957..308816+ (Clytia hemisphaerica)
CTTCCACAGAGCTCTATTAGGATTATAGAAACGGAAAACTTTCATGGTAT
ATTGCTAGCTGGCTGactattaatttttttaattcctaGTCTGTTAAATA
TAAAATCTATAAAACACACAATTAAAAGACACTTCAAGATGGCAGATGCA
ACTTTGTTATCCATGGACAATCCTGTCTTCAAAGCATTTGGTTTTTATGC
AATGGTTGTCATCTTAAAAATGTTTGTGGTACAGTTGAGTGTTCCATATA
GACGAATCACAAGGAAGGTATAAACtttttaagaacaatgaggctcataa
tagtttggagcctttggatgtttttaattattagagttttaagcctaaaa
gtatTTGTAATATGTTCTTatgttcaccattttgtgactaattttgtcca
ttttgtccggcggaacaaccgttaaaGTGGGGAAGCTGAAAGGTCAAAAa
gagataaaattcgctagaaaattaagaaaaaaatctcaattgCTCAAAAA
TGGGGAGACTGAAGTCTcaccagtctccccgcttccgacGGGCCTGCGAA
GTTTCAAGGTTTGCGACTCTATTAAAATGACATAAAATAATTGTATCTCC
CATACCTGAAGTTAACACACGTGACTTTCGTTCAACCCAAACCTAATTCT
TTTTCATTCACCAGAGTTTTTCCACACCCGAAGATATCAAAATGAACGAT
CCATCAGGAAAAttgaaagttatcaaaaatgatGATGTGGTTGAACGACA
CAGATCGTAAGTGTACACCActtttcatgatatgcaccactacaATAAGA
AAGAGCAANAcaacaatcattacatcttccttctaaaattccttctcgtg
caatactcgatattttactcgttccgagattttaccgatatttttcctcg
cctaaaggctcggaaaaatattacggaaaaatcNTTGTCCCTCCCTTCAA
CGAAATTGTGAAACTTTTTTCTGACATTAACTGCTCACAGGGAATACTTT
TAACGGTGGCAATGGGaagacacccctgtttcacgGACCCGCTGGCAATT
gaccaataaaatttctatccccattgggattttaataattattgccgacc
caaaaaaatatcagcgttttgattggtcgagagcatcgagatatttgcga
tatttcatatttctttagtctggaaatNgaatttttatccccgctgagga
aaagagttccaccggggctgcgagacaggggtgtgggAAGGAATGTTCAG
CTAAGGAGGATCCCTGCTCGCTCGTCTAAAAGGAATTTGATCAAATCTTT
gtcatcaaattttcaaaaaacctgAATCGACTCTTTCAAAAACTAACGGA
TTCTTCTTCactaatttttctttaatttcagGGCTCATTTGAATGACATG
GAAAATATCATCCCCTTTGTGCTGGTTGGTTTATTCTACGTTGCAACAAA
TCCTGCAGCTTCTACCGCCATCTTGCTTTTCCGTATTTTCACTGGATCCA
GAATAGTACATTCGATTGTTTACCTGGGCCAAGTTCCACAACCAGCACGT
GCTTTGTCTTTCTTCGTGAGCATGATTGTAAATTGTGTCATGGCCATTTT
TACCTTACAAGCAttcctttgaaaaagaatgaagaTAAAGGATCGGCTTT
GACcggaaaaaatactttttgtagcacgttttttttatttgaaagcatAA
AATGGTTATATGTAACAATTAGGGAATTTTTGTCTtagttatttttaaat
ttggagAGTGAGATCTAGAAATTCTTCTATTATTTGCGCACTCAGCACTT
TTTAGATTGAAAGAAAATCTTCTACACCTTCATGTCAAGGTTCCTTTGTT
AATACTGCTG

Coding sequence (CDS) from alignment at sc0000333:306957..308816+

>TCONS_00019660 ID=TCONS_00019660|Name=TCONS_00019660|organism=Clytia hemisphaerica|type=CDS|length=1386bp|location=Sequence derived from alignment at sc0000333:306957..308816+ (Clytia hemisphaerica)
ATGGCAGATGCAACTTTGTTATCCATGGACAATCCTGTCTTCAAAGCATT
TGGTTTTTATGCAATGGTTGTCATCTTAAAAATGTTTGTGGTACAGTTGA
GTGTTCCATATAGACGAATCACAAGGAAGAGTTTTTCCACACCCGAAGAT
ATCAAAATGAACGATCCATCAGGAAAAttgaaagttatcaaaaatgatGA
TGTGGTTGAACGACACAGATCGGCTCATTTGAATGACATGGAAAATATCA
TCCCCTTTGTGCTGGTTGGTTTATTCTACGTTGCAACAAATCCTGCAGCT
TCTACCGCCATCTTGCTTTTCCGTATTTTCACTGGATCCAGAATAGTACA
TTCGATTGTTTACCTGGGCCAAGTTCCACAACCAGCACGTGCTTTGTCTT
TCTTCGTGAGCATGATTGTAAATTGTGTCATGGCCATTTTTACCTTACAA
GCAttcctttgaATGGCAGATGCAACTTTGTTATCCATGGACAATCCTGT
CTTCAAAGCATTTGGTTTTTATGCAATGGTTGTCATCTTAAAAATGTTTG
TGGTACAGTTGAGTGTTCCATATAGACGAATCACAAGGAAGAGTTTTTCC
ACACCCGAAGATATCAAAATGAACGATCCATCAGGAAAAttgaaagttat
caaaaatgatGATGTGGTTGAACGACACAGATCGGCTCATTTGAATGACA
TGGAAAATATCATCCCCTTTGTGCTGGTTGGTTTATTCTACGTTGCAACA
AATCCTGCAGCTTCTACCGCCATCTTGCTTTTCCGTATTTTCACTGGATC
CAGAATAGTACATTCGATTGTTTACCTGGGCCAAGTTCCACAACCAGCAC
GTGCTTTGTCTTTCTTCGTGAGCATGATTGTAAATTGTGTCATGGCCATT
TTTACCTTACAAGCAttcctttgaATGGCAGATGCAACTTTGTTATCCAT
GGACAATCCTGTCTTCAAAGCATTTGGTTTTTATGCAATGGTTGTCATCT
TAAAAATGTTTGTGGTACAGTTGAGTGTTCCATATAGACGAATCACAAGG
AAGAGTTTTTCCACACCCGAAGATATCAAAATGAACGATCCATCAGGAAA
AttgaaagttatcaaaaatgatGATGTGGTTGAACGACACAGATCGGCTC
ATTTGAATGACATGGAAAATATCATCCCCTTTGTGCTGGTTGGTTTATTC
TACGTTGCAACAAATCCTGCAGCTTCTACCGCCATCTTGCTTTTCCGTAT
TTTCACTGGATCCAGAATAGTACATTCGATTGTTTACCTGGGCCAAGTTC
CACAACCAGCACGTGCTTTGTCTTTCTTCGTGAGCATGATTGTAAATTGT
GTCATGGCCATTTTTACCTTACAAGCAttcctttga
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_011067XLOC_011067Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00019660-proteinTCONS_00019660-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00019660-exon-sc0000333-1491911889:306957..307223TCONS_00019660-exon-sc0000333-1491911889:306957..307223Clytia hemisphaericaexon
TCONS_00019660-exon-sc0000333-1510915933:306957..307223TCONS_00019660-exon-sc0000333-1510915933:306957..307223Clytia hemisphaericaexon
TCONS_00019660-exon-sc0000333-1575043694:306957..307223TCONS_00019660-exon-sc0000333-1575043694:306957..307223Clytia hemisphaericaexon
TCONS_00019660-exon-sc0000333-1491911889:307621..307712TCONS_00019660-exon-sc0000333-1491911889:307621..307712Clytia hemisphaericaexon
TCONS_00019660-exon-sc0000333-1510915933:307621..307712TCONS_00019660-exon-sc0000333-1510915933:307621..307712Clytia hemisphaericaexon
TCONS_00019660-exon-sc0000333-1575043694:307621..307712TCONS_00019660-exon-sc0000333-1575043694:307621..307712Clytia hemisphaericaexon
TCONS_00019660-exon-sc0000333-1491911889:308338..308816TCONS_00019660-exon-sc0000333-1491911889:308338..308816Clytia hemisphaericaexon
TCONS_00019660-exon-sc0000333-1510915933:308338..308816TCONS_00019660-exon-sc0000333-1510915933:308338..308816Clytia hemisphaericaexon
TCONS_00019660-exon-sc0000333-1575043694:308338..308816TCONS_00019660-exon-sc0000333-1575043694:308338..308816Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000333supercontigsc0000333:306957..308816 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
11.0715	10.6745	8.09535	7.54244	5.45205	6.01508	59.476	60.8246	61.5731	61.7742	32.6253	35.7562	28.0257	29.1668	19.7519	22.973	33.3851	36.3368	19.6472	18.3312	46.7983	43.7893	21.582	25.5618	27.1417	31.2832	49.6243	46.3456	19.2877	12.1918
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR001129Membr-assoc_MAPEG
IPR023352MAPEG-like_dom
Blast
[Close]
BLAST of TCONS_00019660 vs. Swiss-Prot (Human)
Match: MGST1 (Microsomal glutathione S-transferase 1 OS=Homo sapiens GN=MGST1 PE=1 SV=1)

HSP 1 Score: 137.117 bits (344), Expect = 3.734e-39
Identity = 70/146 (47.95%), Postives = 93/146 (63.70%), Query Frame = 1 
Query:  163 MDNPVFKAFGFYAMVVILKMFVVQLSVPYRRITRKSFSTPED-IKMNDPSGKLKVIKNDDVVERHRSAHLNDMENIIPFVLVGLFYVATNPAASTAILLFRIFTGSRIVHSIVYLGQVPQPARALSFFVSMIVNCVMAIFTLQAFL 597
            MD+ VF AF  YA +++ KM ++  +  + R+TRK F+ PED +         K ++ DD VER R AHLND+ENIIPF+ +GL Y  + P  STAIL FR+F G+RI H+I YL  +PQP RALSFFV   V   MA   L++ L
Sbjct:    8 MDDEVFMAFASYATIILSKMMLMSTATAFYRLTRKVFANPEDCVAFGKGENAKKYLRTDDRVERVRRAHLNDLENIIPFLGIGLLYSLSGPDPSTAILHFRLFVGARIYHTIAYLTPLPQPNRALSFFVGYGVTLSMAYRLLKSKL 153
The following BLAST results are available for this feature:
BLAST of TCONS_00019660 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
MGST13.734e-3947.95Microsomal glutathione S-transferase 1 OS=Homo sap... [more]
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