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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00019659 ID=TCONS_00019659|Name=TCONS_00019659|organism=Clytia hemisphaerica|type=transcript|length=1508bp
atcaaTTGCTCATAGCAATGCCatgtaaaaatgaaattataaaaCATGAA
CCGAATTCTGTTTGGAGAATTTACAGGCCCAACAACACCACCACCACCTG
GTTATTGGTGCATCCAGCATGGTCTGCAAAATGAATACCTGACAAGTTTT
ACACAGACTGATGCCAATGATTGGCCAGTTAGCAGTAGTGTGCAAATTAC
AGACCCACCGAATTACAGGACAGTGCAGGTTGATTATGTGCGGGATGAAC
CACCACGGTATTTCGACGTCATTTCTAAAATGGCAACGACCAGTACAACA
ACCATCATTCATAACCCAAACAACAATAAcaaccaaacaacaacaacaac
aacatcttCAAAACAATACAATATCCTTAAAAAATGTTGTTGTTGTCGAA
ATTCACTAAAATCATACATCTGCAAAGTTGCTGTTCTTTTCATGTTGATT
TTGGGATTTATTTTGATGATGTCGAGAATTAACTGCGAATGGTAATCGAT
TAAACGTTGTCTTTTTTTGGAAGCTCAATATTGACCAACATTTCAAACAT
GAATTACAGTCAATTTTCACTTATTCGAACCTTCTGCGATTCGAAACTTC
CTGTTCTTCGAAACAAGGAACTTGAATAATCgattttttaaagagaaatt
gaCCAACATTCTCCGGAAATGGTTCGCCTCAAAGATGAACTACAGTCAAC
TATCATTTATTCAACCCTCTGTGATTCGAAACTTCCTGTATATCGAACCA
AAACGTTGGTGTCTTCAGCTGGAAAGTGGCTTAATACTCCCTTTAATTTG
CGTTATTCTTTAATTCGAAGAAGGTTCTCTGTCCCTTCGAAATCGAATTA
GAGGGAGAGCCAACTTTAGCCCAATGGACATACAACATAATTTGAGTATA
TCATCGAATGTAACTGGCACGTATTGGACGTTTAATGGACATCATTTGAA
TGTTATATCAACAGGGTGACCCAGACCTAGTCATTCAATACTGTAAGTCG
TTATCACGACCATCTAGATGTTACTGGACGGACTATAACCGTTGCAGAAG
CTTGAATTCAAATGAGAAAAACCGTCGTCGTTTCCTCTATCAGTAACACA
TCAGCAGTGAATGGCTCAATCTAATCTACGAACATACAAGGTTCcaataa
aaaaatgttgttgGAAAAATGATTAAGTTGTTAAattgcctcgattattc
aaatgCGAAATGAAGTCTTGATTATCCAAACCCGTCTGACTTTGGACGAT
ATTATGATTGTTTTATGAGACAAAACTGAACAATTATGCCTGGGTCATTT
AATGTAATAACAAGACGTTCGTTTTCACAAAATGTATTGATAATTGTTTA
GGTACAGTCTACACTTcggattatttttttataaaacaaatattttccaa
TCAAACTGTTATAGACTCTTATTTCGCTATCTCAGCTTTTGTGTATATTA
GATTATGTATCAATTTGGAAAATGTATCATTGCTGTCAGTTTAACCCTTA
AACTTTTT Run BLAST on NCBI protein sequence of TCONS_00019659-protein >TCONS_00019659-protein ID=TCONS_00019659-protein|Name=TCONS_00019659-protein|organism=Clytia hemisphaerica|type=polypeptide|length=149bp
MNRILFGEFTGPTTPPPPGYWCIQHGLQNEYLTSFTQTDANDWPVSSSVQ
ITDPPNYRTVQVDYVRDEPPRYFDVISKMATTSTTTIIHNPNNNNNQTTT
TTTSSKQYNILKKCCCCRNSLKSYICKVAVLFMLILGFILMMSRINCEW Run BLAST on NCBI transcript from alignment at sc0000333:299825..302896+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00019659 ID=TCONS_00019659|Name=TCONS_00019659|organism=Clytia hemisphaerica|type=transcript|length=3072bp|location=Sequence derived from alignment at sc0000333:299825..302896+ (Clytia hemisphaerica)
atcaaTTGCTCATAGCAATGCCatgtaaaaatgaaattataaaaCATGAA
CCGAATTCTGTTTGGAGAATTTACAGGCCCAACAACACCACCACCACCTG
GTTATTGGTGCATCCAGCATGGTCTGCAAAATGAATACCTGACAAGTTTT
ACACAGACTGATGCCAATGATTGGCCAGTTAGCAGTAGTGTGCAAATTAC
AGACCCACCGAATTACAGGACAGTGCAGGTTGATTATGTGCGGGATGAAC
CACCACGGTATTTCGACGTCATTTCTAAAATGGTAAGATTACTTTTCTTa
cgtttttcttttctatttttgattgttttcttttttggaatattcTTTTG
GTATCTTGACTCGCCCTCAGGGGTTTAGCTTTTTTTATGGTAGGCTgacg
aatgaaaaattaactctctCAGTATATTCATAAGCGTAAGTATGTATTTG
AGGCGGTGAACCGACCTTTTCGAACGGCGAATTGTAATCTTTTTTGTGCC
TTGGACCGGCGAAATTGGCCGTTCGCCGGCCCTAAATAACACCCCTGCCC
CCTTTTTACACTCAATGGTGCTTTCATATCAGGTACACTACTGGTTGAAT
ACTTGAACAGGGGGGAGGTGTTAACAATCTTTTAATTTGATAACTCGTCG
AAAAGCTCTGATTCAGGTACATCCCGGCACGAAATTGAATTTAGAATCCT
CGTCCCTGAGTTGAGCAGCTAGAGACCTGATCATATTCGACCTTTGAAAT
TACTTTTCGACGtggcaaaacagaaaaaaagattCTCAAATCAAATCTAC
AAAACTTGTTTGATTTCAATCACAATCTTAATTATCAAATTAATGAAGGA
GTAAATGAGGATTGGCATCCCGTCCTTTCTTTGCGTGTTTTAAATAGAAG
TTCCGCGTATGGATTATACGGAAATGGATAATTAAGTAAAGACGTTCGGT
CGAGTTTGCTAGTTTTTGATGGAATGTGATGCAAACATATTTGCcgctaa
ataaaataaaagaaaaagtcgTTTATTATACGGTATTTCTGGGATGAATG
TTTCTAATAGAAGTTCCGCTTTAGATTACGGAAATGGATAATTAAGTGAA
GACGCTCGGTCGAGTTAGCCAGTTTTTGATGGAATGTGATGCAAACATAT
TTGCcgctaaataaaataaaagaaaaagtcgTTTATTATACAGTATTTCT
GGGATGCATGTTTTTAATAGGAACCACTGAGCACTATCTCAGTCATGGAT
GTCCCTAGTTTTTCGATATGCTcttataagtaagtaagtctacgACCGCA
GTCAAAggcaacccgaaggctcctctttcaatagctatctacccgaaggt
aggatAGGGCGGatagggcgccactctttctccctggatcgctccactta
cccttgatccttgaGCATCacgtaccattttggaaatctttggtatgact
cgGTTGGGGGTTGAGCCCACAACCTTGcaaaccgtagccggatgctttAC
CACTGCGCTACGGTATGCTCTTATAAAACTAACGCGTATTCAATTGGACA
GTGCTTTCGTCCGTTACACAGACAGGAAAGGCAGGGAAATATATGCGCAG
AGTTTACAAGCGTAATGGTGGTacacgaaaaaaaaatcgacGGAGTTTCA
AAGAAAGACCGTCAAACTCTACCAGCTGTAAACTTTTTTTAgtaaacaaa
aatctgcttttgtAATTTTATTCTTAAAAAGTGATTTGTCTATATTTGAC
TATAGCATACTCTAGTATTCAAATTAAGGTGAAAATTCTAGAAGCTAAac
ttcatttcattttcaaatattttaccTATTGTATCTTTCGTTCTAGGCAA
CGACCAGTACAACAACCATCATTCATAACCCAAACAACAATAAcaaccaa
acaacaacaacaacaacatcttCAAAACAATACAATATCCTTAAAAAATG
TTGTTGTTGTCGAAATTCACTAAAATCATACATCTGCAAAGTTGCTGTTC
TTTTCATGTTGATTTTGGGATTTATTTTGATGATGTCGAGAATTAACTGC
GAATGGTAATCGATTAAACGTTGTCTTTTTTTGGAAGCTCAATATTGACC
AACATTTCAAACATGAATTACAGTCAATTTTCACTTATTCGAACCTTCTG
CGATTCGAAACTTCCTGTTCTTCGAAACAAGGAACTTGAATAATCgattt
tttaaagagaaattgaCCAACATTCTCCGGAAATGGTTCGCCTCAAAGAT
GAACTACAGTCAACTATCATTTATTCAACCCTCTGTGATTCGAAACTTCC
TGTATATCGAACCAAAACGTTGGTGTCTTCAGCTGGAAAGTGGCTTAATA
CTCCCTTTAATTTGCGTTATTCTTTAATTCGAAGAAGGTTCTCTGTCCCT
TCGAAATCGAATTAGAGGGAGAGCCAACTTTAGCCCAATGGACATACAAC
ATAATTTGAGTATATCATCGAATGTAACTGGCACGTATTGGACGTTTAAT
GGACATCATTTGAATGTTATATCAACAGGGTGACCCAGACCTAGTCATTC
AATACTGTAAGTCGTTATCACGACCATCTAGATGTTACTGGACGGACTAT
AACCGTTGCAGAAGCTTGAATTCAAATGAGAAAAACCGTCGTCGTTTCCT
CTATCAGTAACACATCAGCAGTGAATGGCTCAATCTAATCTACGAACATA
CAAGGTTCcaataaaaaaatgttgttgGAAAAATGATTAAGTTGTTAAat
tgcctcgattattcaaatgCGAAATGAAGTCTTGATTATCCAAACCCGTC
TGACTTTGGACGATATTATGATTGTTTTATGAGACAAAACTGAACAATTA
TGCCTGGGTCATTTAATGTAATAACAAGACGTTCGTTTTCACAAAATGTA
TTGATAATTGTTTAGGTACAGTCTACACTTcggattatttttttataaaa
caaatattttccaaTCAAACTGTTATAGACTCTTATTTCGCTATCTCAGC
TTTTGTGTATATTAGATTATGTATCAATTTGGAAAATGTATCATTGCTGT
CAGTTTAACCCTTAAACTTTTT Coding sequence (CDS) from alignment at sc0000333:299825..302896+ >TCONS_00019659 ID=TCONS_00019659|Name=TCONS_00019659|organism=Clytia hemisphaerica|type=CDS|length=900bp|location=Sequence derived from alignment at sc0000333:299825..302896+ (Clytia hemisphaerica)
ATGAACCGAATTCTGTTTGGAGAATTTACAGGCCCAACAACACCACCACC
ACCTGGTTATTGGTGCATCCAGCATGGTCTGCAAAATGAATACCTGACAA
GTTTTACACAGACTGATGCCAATGATTGGCCAGTTAGCAGTAGTGTGCAA
ATTACAGACCCACCGAATTACAGGACAGTGCAGGTTGATTATGTGCGGGA
TGAACCACCACGGTATTTCGACGTCATTTCTAAAATGGCAACGACCAGTA
CAACAACCATCATTCATAACCCAAACAACAATAAcaaccaaacaacaaca
acaacaacatcttCAAAACAATACAATATCCTTAAAAAATGTTGTTGTTG
TCGAAATTCACTAAAATCATACATCTGCAAAGTTGCTGTTCTTTTCATGT
TGATTTTGGGATTTATTTTGATGATGTCGAGAATTAACTGCGAATGGTAA
ATGAACCGAATTCTGTTTGGAGAATTTACAGGCCCAACAACACCACCACC
ACCTGGTTATTGGTGCATCCAGCATGGTCTGCAAAATGAATACCTGACAA
GTTTTACACAGACTGATGCCAATGATTGGCCAGTTAGCAGTAGTGTGCAA
ATTACAGACCCACCGAATTACAGGACAGTGCAGGTTGATTATGTGCGGGA
TGAACCACCACGGTATTTCGACGTCATTTCTAAAATGGCAACGACCAGTA
CAACAACCATCATTCATAACCCAAACAACAATAAcaaccaaacaacaaca
acaacaacatcttCAAAACAATACAATATCCTTAAAAAATGTTGTTGTTG
TCGAAATTCACTAAAATCATACATCTGCAAAGTTGCTGTTCTTTTCATGT
TGATTTTGGGATTTATTTTGATGATGTCGAGAATTAACTGCGAATGGTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00019659-exon-sc0000333-1491911889:299825..300106 | TCONS_00019659-exon-sc0000333-1491911889:299825..300106 | Clytia hemisphaerica | exon |
| TCONS_00019659-exon-sc0000333-1510915933:299825..300106 | TCONS_00019659-exon-sc0000333-1510915933:299825..300106 | Clytia hemisphaerica | exon |
| TCONS_00019659-exon-sc0000333-1575043694:299825..300106 | TCONS_00019659-exon-sc0000333-1575043694:299825..300106 | Clytia hemisphaerica | exon |
| TCONS_00019659-exon-sc0000333-1491911889:301671..302896 | TCONS_00019659-exon-sc0000333-1491911889:301671..302896 | Clytia hemisphaerica | exon |
| TCONS_00019659-exon-sc0000333-1510915933:301671..302896 | TCONS_00019659-exon-sc0000333-1510915933:301671..302896 | Clytia hemisphaerica | exon |
| TCONS_00019659-exon-sc0000333-1575043694:301671..302896 | TCONS_00019659-exon-sc0000333-1575043694:301671..302896 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
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| sc0000333 | supercontig | sc0000333:299825..302896 + |
Blast
The following BLAST results are available for this feature:
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