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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00019656 ID=TCONS_00019656|Name=TCONS_00019656|organism=Clytia hemisphaerica|type=transcript|length=779bp
aaaaacttcaagatGACAGATGGGTTATGCATTTCAACAATTATGATCTG
ACACGGGTTGATGGTAAACGATGCACGGACGCGCGGTTGATCGTTGAACA
AAGCGTCCCCCGTCCGCTACAGTGGGCAGGAAAAGGACACTCAGTTGCAG
GTGTTATATGTGAAACATGGTGGGGAGTTGATGAACAACCACAAATGGCA
TGTCCACGCTATATGGCCCGACGTCTATGCGAGAAACTTGAATCAGAATT
CAAGCTACGCATTCTTCACGCTTCAGAAATGGAGTTCACCATCTTCAAAG
AAAACATGGAACCACTTTTTGAAGAAGGTGGTTTCTACATTTCACAAGAG
TTCGCCAACCATGAAGAAGAGCTTCTCTCTTTATCAACGATGTGCGAGAA
AGCAGGTATCCCAATTGAAACACTTCAAACAGAATATGGACCAGGGCAAA
TCGAACTTGTATTAAAACCAGAATTTGGTGTCGAAGGAGCTGACaatgaa
tttttgtttaaaaatgctgccAAAGAAATGCTACAAAAACCAGGACAATA
TTCGAGATGTACTTTCATGTCTAAACCAATCATAGATAAAGTTGgaaacG
GGAGCCATTACAACCATTCATTATGGAAAGTTAAAGAAAACGGAGACGTC
NTTCGAACTAAATCGTTGGTTATCTCAACTTGAAAGTCgcataaaatact
ctctgtaaaTTTTCGGTCTcttaaaatcgaattagagagagtcaaatGCG
TAGCTTTTtcttcgaaatagtttcaatgA Run BLAST on NCBI transcript from alignment at sc0000333:272294..277676+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00019656 ID=TCONS_00019656|Name=TCONS_00019656|organism=Clytia hemisphaerica|type=transcript|length=5383bp|location=Sequence derived from alignment at sc0000333:272294..277676+ (Clytia hemisphaerica)
aaaaacttcaagatGACAGATGGGTTATGCAGTAAGTTATgaatcttttc
tatttttcttgaaatgCCCCTGAAagaggtacacgtttttttataagaaa
atcaaagttttttgaagctttcggatattcttaaccttttgggttttaag
cctaaaatcgttcttaaaatgttcttattttttccattttgtgacctttt
ttacccattttcctaaaaaaatcaGGTGTATTcaagtccgcaaagcctta
aaattagcctaccttaaaatgttcttaacttgttcttagcattttggtga
tcgaagccttatgttcttatatagtttgttcttgtcaAAAAGCATGTAGA
AGATTCAAAGCCAGGTTTGTAAGGACAGTTTACAGTGGGTTTAAAGTTGA
AATTTACTTATTTGAAATGGACTTTGGAGTTCAGTGAtgcatttcaattt
tattttacttgggaagaaaaaaagaaaaaaatcaaaaaaaaagaaaaaat
tcaaaaatatttgcaaaaaatcCTTGGAGATCGAATTGAAAAACAGGTTC
ATCTAGTTGTTTATCTAGTTTTGATgacagaaaatattttaattagagag
ggagaaaaaaacaacgaacAAATTCTCTAAAGAAAAATCGGGCTTAACAA
AAACATTTCGTGATATATATTAATTGATTGCGCAATCAGATCTTGTAAAA
CACGTTTGCTTGCTTATGTTCAGTCCCTTTGCACGTTTTATTATAAGagc
aaactttataagaacataaggcttcgatggtcaaaatgttaagaacaagt
taagaacaatttaaggctttgcagactctaaaacacccaattttttagga
aaatggacaagaatactaaaaaaatggaacatgttaaaaatattttaagg
cttaaaaatcaaaaagttaagaacacccataaaaaaacgtgttgtCTCTT
TATAAGAATTCTAAAGCTGTGTCGATTTTTCTGGGCAGTAAAATCAAGTA
AAAATGTTACAGACTAATATATAGGATTCAAATATCGGGATAGACCTGCT
TTCTTTCTCGCCACGGAATTTAAATGTACAAgaagtacatattttttata
agaacatttgagTCCacagagccttaaaatgttcttaacttgttcttaat
attttggccagcGGAGCCTTATTATCTTATATACTGTAGTTTGTTGTTAT
AAATAGTTTGAAAAACTGTGATATAATGTCGGAGCTTTTTTTAAATCCAG
AGGACACCCTTTTACCAGTTATGGACACAAGGCATTGAAATCCTGTTGAT
CGTAAAGCAACCTTAACCAAGAAGTTtttacttaaaggttttgtttttaa
ataagagtgatatcgtttgcttacttacaagctttttcacttggattgac
acggatgcggagcaagattggttaaaaaaaggaaaagaaaagcatctttt
tgcttatatcagcacaatttaacaataggcagatactgtcctgatatgaa
atatttcttaaaaggTGTTTGGTTTGAGTCATCAGACAGGGTCGAGTAGT
AACGCCTGGTATCTGAAGTCATTAcaaagaatggtgttttttcatttcat
catggatattcttaactttttggcgaaaatcgtccaaaaatattcttacg
gtattcttaggttaagatcgaaattggcaatctacaggttaaaatgcatt
aaaaatggcatttttaggtttagttgctaaatttcatgatggtgatattc
ttaccatattcttaattttttgcccattttcatcatggacattcttataa
agtgtattcttataataaaaaaagcgtgtacatcgAGGTCCTTCCAAATA
TACAATaaactctctttaattcgaacatcTTTTATTTGAAAGGTTCTGTA
ATTCGACCTAGAACATTGGACCCCTTTAGCTAGAGAGTCGGACAAACCAT
GCTCTGTAATCTGACAGATCTTTTGATGGTTCAAAAACAGTAGCTTGGTC
ATTTGACGATCGAATTGTAGAGAGGCAACTGTACACCTTTTCGTAAATGT
TTTAGCTTAGGGTCTATATAGGAGgtgaccgtagtgcagtggtagagcat
ccggctaacggttcgcaaggttgtgggttcaatccccagccggtcatacc
aaagattccaaaACTGtatacttgatgcctctctgcttgttgctcagaaa
ttaaaagaacgatcaagggtaagtggagcaatccaggaagagtggcgccc
tcccctaccttcgggttgaaagctatcgaaagaggagcctgcGGGTCGCC
TCCATCTGCGGTcgtagacttacttacttactgctTAGGAGGCCCCCTCA
CAAGCGGTAtgtctgatcacgatatcacgcaaatTCTGTCTTGGATCACG
ATCCCGCAAATTCAGCAAAAAGATTGGATAATCgtgcatccctttgaaaa
agtcaaaatcacgCATCATGGCTCAAAAATCtatcaaatcacgatcacgg
tTTGACCTCTTATCCGGCAATCacgtagtctagcaagctagacgactaat
tcagacttattagaaatgaagcaaaaaagtaaattttagtcgtctagaaa
cctttgtgcactaactccaaacaaNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNTGGAACACCgaattcttccagtcgtttatacaaactaaatcccgtatc
attatttgtgtttattattagtattacatgcattataaacgactccagtc
tagcaatcacgaaaaaatctccaaatcacgtaatcgcGGTaaaaaaaagt
ccctatcacgccatcacgaaaactgTTTGGGGGCCTCGCATAGGACCTCT
AAAATCTAACAAAATGTTAACATTCTACTTTAATTTCTTATATTTAAAAA
gtcattttgaaattgaattaaGTACGCGATGTGTGATTTATTGATTAAGC
CCTTTGCTCTCAAGCTGTAAACATCTAAATCTTAGCAGAGATTTATTTCT
GCTTTAAAAACTTAATTGGGCAACAAATATTACGAAATTATTAAAAGAAA
GACGTATCTAATTTTGCTATattcgttttgtataagaacatccacaactt
ttgaagcctttggatgttcttaactttttgagttttataagcctaaaaat
gtttttagcatatctttattttcaccataatgtgagtatttttttccatt
tttcctaagaaatcgggttgTTAAGTAGTACACAAAggctaaaaattgta
aaaatgttctcaacttgctCTTAAGATTtaggccatcaaagccttatgtt
ttaTCAAAgtttgttcatataaaaaaggGGTAATGGAAACTGCTAAGAAA
CTCATTTACGCTTATGCTTCGATaaaatttctaataaaaaatggaTGATG
AAATATCACTTAAAAAACTTATAGGGTTATCATTAATGACGTGATCTGAA
TAGctcttgcaaaaaaaaaacgctCAATACTCTTTATTAGAGATTTGTCC
TAAGATTACTAGTAAGAATTTGTTTGAATTTGTTCTATTCTTAGCTAGGA
TATCCTCTTTATTACTAAAACtggtttttcaagttttagatGTTTATACT
AATGAGTTATATTGATCAAATTTCGAAATTGCTGATTGTCACTTTTTAAG
TTATTCTGGTAAAACAAGACGAGAATAAAAAGTATTTAAGGCCGCTGAAT
TTGTTAATATCTCACTCATACTTCAAAGTCTAAAGTCAACCATCATCGAC
CAAGCGAGTCAAAACCGGGCAGTTCAAAAAGGTGACAGTTAGGTTTGTAA
AGCTCTTCGAACGTTTAAAAGTAGTGAACAAGATATCTATTTTATCGATA
CCTATTCTCAAACGATAATGGCACCACACGAATCAACAAGAATCGAATCA
ATTCGACCAATCACTATGGAATCGATTTTATTCGGGGATGAACTTAACAC
TGATAGCTTGAAAACGAAAATCGAGGACTACGATTTTTATCGATATCTCG
TTTCTGATTTTCACGGAATTGCTCGGTGTAAAATTATCACTAAATCAGCG
TACCCGCGCATGTCAAAAAAGGGGCCTGGAATTGCTTGGAGGACACCTGT
TCTATCGTTCGACAGTTTCAACAATTATGATCTGACACGGGTTGATGGTA
AACGATGCACGGACGCGCGGTTGATCGTTGAACAAAGCGTCCCCCGTCCG
CTACAGTGGGCAGGAAAAGGACACTCAGTTGCAGGTGTTATATGTGAAAC
ATGGTGGGGAGTTGATGAACAACCACAAATGGCATGTCCACGCTATATGG
CCCGACGTCTATGCGAGAAACTTGAATCAGAATTCAAGCTACGCATTCTT
CACGCTTCAGAAATGGAGTTCACCATCTTCAAAGAAAACATGGAACCACT
TTTTGAAGAAGGTGGTTTCTACATTTCACAAGAGTTCGCCAACCATGAAG
AAGAGCTTCTCTCTTTATCAACGATGTGCGAGAAAGCAGGTATCCCAATT
GAAACACTTCAAACAGAATATGGACCAGGGCAAATCGAACTTGTATTAAA
ACCAGAATTTGGTGTCGAAGGAGCTGACaatgaatttttgtttaaaaatg
ctgccAAAGAAATGCTACAAAAACCAGGACAATATTCGAGATGTACTTTC
ATGTCTAAACCAATCATAGATAAAGTTGGTAAGTTAcatcttatttttct
ttaactttATGTAATCGGAATAGTAtccaagctggcacacaacgttgttt
caacgtttatctaacgttcacaacgtctatataacgttagatgaacgttg
aaagaacgttctTTGCCAGCTGGGTACAATCCTTTATCGGGGAATTTTTA
TTCATCTCGCCAATTTTTCTAATTTGGCTACGCCGTTGGGAAAACAAAAA
CGAGCAGTCTTTTTTACAAAGTCAACGAAAACAGGAAAAACTTGGTGAGA
TTTCACTAGGATTTCAACTAGGAAATAAGAACCTGGAAATAAGAACCTTA
CTTTCTTTACTTTTCTCGATTAACTATTCCGATTGGGTTACGTTTTCTAG
AAAACGGGAATAAGAACTAGTCGACCAAGGACAGAGAATCCCACTCTACT
TTCcttacttttatttattaacTATTCCGATcgggtttggttttatagga
aacGGGAGCCATTACAACCATTCATTATGGAAAGTTAAAGAAAACGGAGA
CGTCNTTCGAACTAAATCGTTGGTTATCTCAACTTGAAAGTCgcataaaa
tactctctgtaaaTTTTCGGTCTcttaaaatcgaattagagagagtcaaa
tGCGTAGCTTTTtcttcgaaatagtttcaatgA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00019656-exon-sc0000333-1491911889:272294..272324 | TCONS_00019656-exon-sc0000333-1491911889:272294..272324 | Clytia hemisphaerica | exon |
| TCONS_00019656-exon-sc0000333-1510915933:272294..272324 | TCONS_00019656-exon-sc0000333-1510915933:272294..272324 | Clytia hemisphaerica | exon |
| TCONS_00019656-exon-sc0000333-1575043694:272294..272324 | TCONS_00019656-exon-sc0000333-1575043694:272294..272324 | Clytia hemisphaerica | exon |
| TCONS_00019656-exon-sc0000333-1491911889:276459..277021 | TCONS_00019656-exon-sc0000333-1491911889:276459..277021 | Clytia hemisphaerica | exon |
| TCONS_00019656-exon-sc0000333-1510915933:276459..277021 | TCONS_00019656-exon-sc0000333-1510915933:276459..277021 | Clytia hemisphaerica | exon |
| TCONS_00019656-exon-sc0000333-1575043694:276459..277021 | TCONS_00019656-exon-sc0000333-1575043694:276459..277021 | Clytia hemisphaerica | exon |
| TCONS_00019656-exon-sc0000333-1491911889:277492..277676 | TCONS_00019656-exon-sc0000333-1491911889:277492..277676 | Clytia hemisphaerica | exon |
| TCONS_00019656-exon-sc0000333-1510915933:277492..277676 | TCONS_00019656-exon-sc0000333-1510915933:277492..277676 | Clytia hemisphaerica | exon |
| TCONS_00019656-exon-sc0000333-1575043694:277492..277676 | TCONS_00019656-exon-sc0000333-1575043694:277492..277676 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000333 | supercontig | sc0000333:272294..277676 + |
Blast
The following BLAST results are available for this feature:
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