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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00019655 ID=TCONS_00019655|Name=TCONS_00019655|organism=Clytia hemisphaerica|type=transcript|length=1318bp
CTAAAAAAACAAGATGAAGtatctaatttgttcgaatttcTtGAAAGGTT
GAAGCTGGACGCTAGAgcgggatgaaaaacttcaagatGACAGATGGGTT
ATGCATTATTCTGGTAAAACAAGACGAGAATAAAAAGTATTTAAGGCCGC
TGAATTTGTTAATATCTCACTCATACTTCAAAGTCTAAAGTCAACCATCA
TCGACCAAGCGAGTCAAAACCGGGCAGTTCAAAAAGGTGACAGTTAGGTT
TGTAAAGCTCTTCGAACGTTTAAAAGTAGTGAACAAGATATCTATTTTAT
CGATACCTATTCTCAAACGATAATGGCACCACACGAATCAACAAGAATCG
AATCAATTCGACCAATCACTATGGAATCGATTTTATTCGGGGATGAACTT
AACACTGATAGCTTGAAAACGAAAATCGAGGACTACGATTTTTATCGATA
TCTCGTTTCTGATTTTCACGGAATTGCTCGGTGTAAAATTATCACTAAAT
CAGCGTACCCGCGCATGTCAAAAAAGGGGCCTGGAATTGCTTGGAGGACA
CCTGTTCTATCGTTCGACAGTTTCAACAATTATGATCTGACACGGGTTGA
TGGTAAACGATGCACGGACGCGCGGTTGATCGTTGAACAAAGCGTCCCCC
GTCCGCTACAGTGGGCAGGAAAAGGACACTCAGTTGCAGGTGTTATATGT
GAAACATGGTGGGGAGTTGATGAACAACCACAAATGGCATGTCCACGCTA
TATGGCCCGACGTCTATGCGAGAAACTTGAATCAGAATTCAAGCTACGCA
TTCTTCACGCTTCAGAAATGGAGTTCACCATCTTCAAAGAAAACATGGAA
CCACTTTTTGAAGAAGGTGGTTTCTACATTTCACAAGAGTTCGCCAACCA
TGAAGAAGAGCTTCTCTCTTTATCAACGATGTGCGAGAAAGCAGGTATCC
CAATTGAAACACTTCAAACAGAATATGGACCAGGGCAAATCGAACTTGTA
TTAAAACCAGAATTTGGTGTCGAAGGAGCTGACaatgaatttttgtttaa
aaatgctgccAAAGAAATGCTACAAAAACCAGGACAATATTCGAGATGTA
CTTTCATGTCTAAACCAATCATAGATAAAGTTGgaaacGGGAGCCATTAC
AACCATTCATTATGGAAAGTTAAAGAAAACGGAGACGTCNTTCGAACTAA
ATCGTTGGTTATCTCAACTTGAAAGTCgcataaaatactctctgtaaaTT
TTCGGTCTcttaaaatcgaattagagagagtcaaatGCGTAGCTTTTtct
tcgaaatagtttcaatgA Run BLAST on NCBI protein sequence of TCONS_00019655-protein >TCONS_00019655-protein ID=TCONS_00019655-protein|Name=TCONS_00019655-protein|organism=Clytia hemisphaerica|type=polypeptide|length=299bp
MAPHESTRIESIRPITMESILFGDELNTDSLKTKIEDYDFYRYLVSDFHG
IARCKIITKSAYPRMSKKGPGIAWRTPVLSFDSFNNYDLTRVDGKRCTDA
RLIVEQSVPRPLQWAGKGHSVAGVICETWWGVDEQPQMACPRYMARRLCE
KLESEFKLRILHASEMEFTIFKENMEPLFEEGGFYISQEFANHEEELLSL
STMCEKAGIPIETLQTEYGPGQIELVLKPEFGVEGADNEFLFKNAAKEML
QKPGQYSRCTFMSKPIIDKVGNGSHYNHSLWKVKENGDVXRTKSLVIST Run BLAST on NCBI transcript from alignment at sc0000333:271239..277676+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00019655 ID=TCONS_00019655|Name=TCONS_00019655|organism=Clytia hemisphaerica|type=transcript|length=6438bp|location=Sequence derived from alignment at sc0000333:271239..277676+ (Clytia hemisphaerica)
CTAAAAAAACAAGATGAAGtatctaatttgttcgaatttcTGTAAGTGTT
TCTCCCTTCTTTATCCTACAATTCTtcatatgcgtaagtcatttttctag
cggaaacatcctaaaaaagccgggatttgacctctctctgttactaaaaa
tagaaacaaagaGGTCAAAAATaacggcttttttgggtgcttccgttaaa
aaatatgacgccATCtcgacttacgcatatcaagaatatcaTCATTTTGA
ACCTAAagaattttttaatacgccCTGTATCACAATAATATTTGCCCCCg
taggagcgcagcgacgaggaggcactcatagcttcatgCATAGATAATGg
attattaaaaaacatgtagaaGATTCAAAGCCACGTTTGTAAGGACAGTT
TACAGTGGGATTAAAGTTGAAATTTACTTTCGTTTACTTATTTGAAATGG
ACTTTGGAGGTCAGTGAtgcatttcaattttattttacttgGGAAGTGTA
TTAtcgactctatccgccgcgcaacatattacgttttataatatacaaac
tatgttatatcataatagtatattatacggacgatatcgtctacggtgcg
caaggttgtgggttcgatccccagccgggtcataccaaagatttccaaaa
tactACTTGATCCCTCTCTGCtcgatgctcagcaactaaagagacggatc
aagggtaagtggagaaatccaggggaAGTAGTGGTACCCTcctctacctt
cgggtagacagctatactaaaagggagcctttgggtcgccctcgactgcg
gtcttACTTGAGATTGAATGAGACTTAAGACAAGCTTGAGATCTTAAgat
ctaaaaaagttaaaaatgttccaataaggttTCTGGAAGCCAATTTCAAA
ACTGAAATGCCTCGAATAACGTAGGAAAACTGAAGTCGCCATTCTAGCCT
GagctttgaaaattgaaatacctAGAAATGCTAataaatgaatgtaaata
atttttttttttttgtgtttagtGAAAGGTTGAAGCTGGACGCTAGAgcg
ggatgaaaaacttcaagatGACAGATGGGTTATGCAGTAAGTTATgaatc
ttttctatttttcttgaaatgCCCCTGAAagaggtacacgtttttttata
agaaaatcaaagttttttgaagctttcggatattcttaaccttttgggtt
ttaagcctaaaatcgttcttaaaatgttcttattttttccattttgtgac
cttttttacccattttcctaaaaaaatcaGGTGTATTcaagtccgcaaag
ccttaaaattagcctaccttaaaatgttcttaacttgttcttagcatttt
ggtgatcgaagccttatgttcttatatagtttgttcttgtcaAAAAGCAT
GTAGAAGATTCAAAGCCAGGTTTGTAAGGACAGTTTACAGTGGGTTTAAA
GTTGAAATTTACTTATTTGAAATGGACTTTGGAGTTCAGTGAtgcatttc
aattttattttacttgggaagaaaaaaagaaaaaaatcaaaaaaaaagaa
aaaattcaaaaatatttgcaaaaaatcCTTGGAGATCGAATTGAAAAACA
GGTTCATCTAGTTGTTTATCTAGTTTTGATgacagaaaatattttaatta
gagagggagaaaaaaacaacgaacAAATTCTCTAAAGAAAAATCGGGCTT
AACAAAAACATTTCGTGATATATATTAATTGATTGCGCAATCAGATCTTG
TAAAACACGTTTGCTTGCTTATGTTCAGTCCCTTTGCACGTTTTATTATA
AGagcaaactttataagaacataaggcttcgatggtcaaaatgttaagaa
caagttaagaacaatttaaggctttgcagactctaaaacacccaattttt
taggaaaatggacaagaatactaaaaaaatggaacatgttaaaaatattt
taaggcttaaaaatcaaaaagttaagaacacccataaaaaaacgtgttgt
CTCTTTATAAGAATTCTAAAGCTGTGTCGATTTTTCTGGGCAGTAAAATC
AAGTAAAAATGTTACAGACTAATATATAGGATTCAAATATCGGGATAGAC
CTGCTTTCTTTCTCGCCACGGAATTTAAATGTACAAgaagtacatatttt
ttataagaacatttgagTCCacagagccttaaaatgttcttaacttgttc
ttaatattttggccagcGGAGCCTTATTATCTTATATACTGTAGTTTGTT
GTTATAAATAGTTTGAAAAACTGTGATATAATGTCGGAGCTTTTTTTAAA
TCCAGAGGACACCCTTTTACCAGTTATGGACACAAGGCATTGAAATCCTG
TTGATCGTAAAGCAACCTTAACCAAGAAGTTtttacttaaaggttttgtt
tttaaataagagtgatatcgtttgcttacttacaagctttttcacttgga
ttgacacggatgcggagcaagattggttaaaaaaaggaaaagaaaagcat
ctttttgcttatatcagcacaatttaacaataggcagatactgtcctgat
atgaaatatttcttaaaaggTGTTTGGTTTGAGTCATCAGACAGGGTCGA
GTAGTAACGCCTGGTATCTGAAGTCATTAcaaagaatggtgttttttcat
ttcatcatggatattcttaactttttggcgaaaatcgtccaaaaatattc
ttacggtattcttaggttaagatcgaaattggcaatctacaggttaaaat
gcattaaaaatggcatttttaggtttagttgctaaatttcatgatggtga
tattcttaccatattcttaattttttgcccattttcatcatggacattct
tataaagtgtattcttataataaaaaaagcgtgtacatcgAGGTCCTTCC
AAATATACAATaaactctctttaattcgaacatcTTTTATTTGAAAGGTT
CTGTAATTCGACCTAGAACATTGGACCCCTTTAGCTAGAGAGTCGGACAA
ACCATGCTCTGTAATCTGACAGATCTTTTGATGGTTCAAAAACAGTAGCT
TGGTCATTTGACGATCGAATTGTAGAGAGGCAACTGTACACCTTTTCGTA
AATGTTTTAGCTTAGGGTCTATATAGGAGgtgaccgtagtgcagtggtag
agcatccggctaacggttcgcaaggttgtgggttcaatccccagccggtc
ataccaaagattccaaaACTGtatacttgatgcctctctgcttgttgctc
agaaattaaaagaacgatcaagggtaagtggagcaatccaggaagagtgg
cgccctcccctaccttcgggttgaaagctatcgaaagaggagcctgcGGG
TCGCCTCCATCTGCGGTcgtagacttacttacttactgctTAGGAGGCCC
CCTCACAAGCGGTAtgtctgatcacgatatcacgcaaatTCTGTCTTGGA
TCACGATCCCGCAAATTCAGCAAAAAGATTGGATAATCgtgcatcccttt
gaaaaagtcaaaatcacgCATCATGGCTCAAAAATCtatcaaatcacgat
cacggtTTGACCTCTTATCCGGCAATCacgtagtctagcaagctagacga
ctaattcagacttattagaaatgaagcaaaaaagtaaattttagtcgtct
agaaacctttgtgcactaactccaaacaaNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNTGGAACACCgaattcttccagtcgtttatacaaactaaatccc
gtatcattatttgtgtttattattagtattacatgcattataaacgactc
cagtctagcaatcacgaaaaaatctccaaatcacgtaatcgcGGTaaaaa
aaagtccctatcacgccatcacgaaaactgTTTGGGGGCCTCGCATAGGA
CCTCTAAAATCTAACAAAATGTTAACATTCTACTTTAATTTCTTATATTT
AAAAAgtcattttgaaattgaattaaGTACGCGATGTGTGATTTATTGAT
TAAGCCCTTTGCTCTCAAGCTGTAAACATCTAAATCTTAGCAGAGATTTA
TTTCTGCTTTAAAAACTTAATTGGGCAACAAATATTACGAAATTATTAAA
AGAAAGACGTATCTAATTTTGCTATattcgttttgtataagaacatccac
aacttttgaagcctttggatgttcttaactttttgagttttataagccta
aaaatgtttttagcatatctttattttcaccataatgtgagtattttttt
ccatttttcctaagaaatcgggttgTTAAGTAGTACACAAAggctaaaaa
ttgtaaaaatgttctcaacttgctCTTAAGATTtaggccatcaaagcctt
atgttttaTCAAAgtttgttcatataaaaaaggGGTAATGGAAACTGCTA
AGAAACTCATTTACGCTTATGCTTCGATaaaatttctaataaaaaatgga
TGATGAAATATCACTTAAAAAACTTATAGGGTTATCATTAATGACGTGAT
CTGAATAGctcttgcaaaaaaaaaacgctCAATACTCTTTATTAGAGATT
TGTCCTAAGATTACTAGTAAGAATTTGTTTGAATTTGTTCTATTCTTAGC
TAGGATATCCTCTTTATTACTAAAACtggtttttcaagttttagatGTTT
ATACTAATGAGTTATATTGATCAAATTTCGAAATTGCTGATTGTCACTTT
TTAAGTTATTCTGGTAAAACAAGACGAGAATAAAAAGTATTTAAGGCCGC
TGAATTTGTTAATATCTCACTCATACTTCAAAGTCTAAAGTCAACCATCA
TCGACCAAGCGAGTCAAAACCGGGCAGTTCAAAAAGGTGACAGTTAGGTT
TGTAAAGCTCTTCGAACGTTTAAAAGTAGTGAACAAGATATCTATTTTAT
CGATACCTATTCTCAAACGATAATGGCACCACACGAATCAACAAGAATCG
AATCAATTCGACCAATCACTATGGAATCGATTTTATTCGGGGATGAACTT
AACACTGATAGCTTGAAAACGAAAATCGAGGACTACGATTTTTATCGATA
TCTCGTTTCTGATTTTCACGGAATTGCTCGGTGTAAAATTATCACTAAAT
CAGCGTACCCGCGCATGTCAAAAAAGGGGCCTGGAATTGCTTGGAGGACA
CCTGTTCTATCGTTCGACAGTTTCAACAATTATGATCTGACACGGGTTGA
TGGTAAACGATGCACGGACGCGCGGTTGATCGTTGAACAAAGCGTCCCCC
GTCCGCTACAGTGGGCAGGAAAAGGACACTCAGTTGCAGGTGTTATATGT
GAAACATGGTGGGGAGTTGATGAACAACCACAAATGGCATGTCCACGCTA
TATGGCCCGACGTCTATGCGAGAAACTTGAATCAGAATTCAAGCTACGCA
TTCTTCACGCTTCAGAAATGGAGTTCACCATCTTCAAAGAAAACATGGAA
CCACTTTTTGAAGAAGGTGGTTTCTACATTTCACAAGAGTTCGCCAACCA
TGAAGAAGAGCTTCTCTCTTTATCAACGATGTGCGAGAAAGCAGGTATCC
CAATTGAAACACTTCAAACAGAATATGGACCAGGGCAAATCGAACTTGTA
TTAAAACCAGAATTTGGTGTCGAAGGAGCTGACaatgaatttttgtttaa
aaatgctgccAAAGAAATGCTACAAAAACCAGGACAATATTCGAGATGTA
CTTTCATGTCTAAACCAATCATAGATAAAGTTGGTAAGTTAcatcttatt
tttctttaactttATGTAATCGGAATAGTAtccaagctggcacacaacgt
tgtttcaacgtttatctaacgttcacaacgtctatataacgttagatgaa
cgttgaaagaacgttctTTGCCAGCTGGGTACAATCCTTTATCGGGGAAT
TTTTATTCATCTCGCCAATTTTTCTAATTTGGCTACGCCGTTGGGAAAAC
AAAAACGAGCAGTCTTTTTTACAAAGTCAACGAAAACAGGAAAAACTTGG
TGAGATTTCACTAGGATTTCAACTAGGAAATAAGAACCTGGAAATAAGAA
CCTTACTTTCTTTACTTTTCTCGATTAACTATTCCGATTGGGTTACGTTT
TCTAGAAAACGGGAATAAGAACTAGTCGACCAAGGACAGAGAATCCCACT
CTACTTTCcttacttttatttattaacTATTCCGATcgggtttggtttta
taggaaacGGGAGCCATTACAACCATTCATTATGGAAAGTTAAAGAAAAC
GGAGACGTCNTTCGAACTAAATCGTTGGTTATCTCAACTTGAAAGTCgca
taaaatactctctgtaaaTTTTCGGTCTcttaaaatcgaattagagagag
tcaaatGCGTAGCTTTTtcttcgaaatagtttcaatgA Coding sequence (CDS) from alignment at sc0000333:271239..277676+ >TCONS_00019655 ID=TCONS_00019655|Name=TCONS_00019655|organism=Clytia hemisphaerica|type=CDS|length=1800bp|location=Sequence derived from alignment at sc0000333:271239..277676+ (Clytia hemisphaerica)
ATGGCACCACACGAATCAACAAGAATCGAATCAATTCGACCAATCACTAT
GGAATCGATTTTATTCGGGGATGAACTTAACACTGATAGCTTGAAAACGA
AAATCGAGGACTACGATTTTTATCGATATCTCGTTTCTGATTTTCACGGA
ATTGCTCGGTGTAAAATTATCACTAAATCAGCGTACCCGCGCATGTCAAA
AAAGGGGCCTGGAATTGCTTGGAGGACACCTGTTCTATCGTTCGACAGTT
TCAACAATTATGATCTGACACGGGTTGATGGTAAACGATGCACGGACGCG
CGGTTGATCGTTGAACAAAGCGTCCCCCGTCCGCTACAGTGGGCAGGAAA
AGGACACTCAGTTGCAGGTGTTATATGTGAAACATGGTGGGGAGTTGATG
AACAACCACAAATGGCATGTCCACGCTATATGGCCCGACGTCTATGCGAG
AAACTTGAATCAGAATTCAAGCTACGCATTCTTCACGCTTCAGAAATGGA
GTTCACCATCTTCAAAGAAAACATGGAACCACTTTTTGAAGAAGGTGGTT
TCTACATTTCACAAGAGTTCGCCAACCATGAAGAAGAGCTTCTCTCTTTA
TCAACGATGTGCGAGAAAGCAGGTATCCCAATTGAAACACTTCAAACAGA
ATATGGACCAGGGCAAATCGAACTTGTATTAAAACCAGAATTTGGTGTCG
AAGGAGCTGACaatgaatttttgtttaaaaatgctgccAAAGAAATGCTA
CAAAAACCAGGACAATATTCGAGATGTACTTTCATGTCTAAACCAATCAT
AGATAAAGTTGgaaacGGGAGCCATTACAACCATTCATTATGGAAAGTTA
AAGAAAACGGAGACGTCNTTCGAACTAAATCGTTGGTTATCTCAACTTGA
ATGGCACCACACGAATCAACAAGAATCGAATCAATTCGACCAATCACTAT
GGAATCGATTTTATTCGGGGATGAACTTAACACTGATAGCTTGAAAACGA
AAATCGAGGACTACGATTTTTATCGATATCTCGTTTCTGATTTTCACGGA
ATTGCTCGGTGTAAAATTATCACTAAATCAGCGTACCCGCGCATGTCAAA
AAAGGGGCCTGGAATTGCTTGGAGGACACCTGTTCTATCGTTCGACAGTT
TCAACAATTATGATCTGACACGGGTTGATGGTAAACGATGCACGGACGCG
CGGTTGATCGTTGAACAAAGCGTCCCCCGTCCGCTACAGTGGGCAGGAAA
AGGACACTCAGTTGCAGGTGTTATATGTGAAACATGGTGGGGAGTTGATG
AACAACCACAAATGGCATGTCCACGCTATATGGCCCGACGTCTATGCGAG
AAACTTGAATCAGAATTCAAGCTACGCATTCTTCACGCTTCAGAAATGGA
GTTCACCATCTTCAAAGAAAACATGGAACCACTTTTTGAAGAAGGTGGTT
TCTACATTTCACAAGAGTTCGCCAACCATGAAGAAGAGCTTCTCTCTTTA
TCAACGATGTGCGAGAAAGCAGGTATCCCAATTGAAACACTTCAAACAGA
ATATGGACCAGGGCAAATCGAACTTGTATTAAAACCAGAATTTGGTGTCG
AAGGAGCTGACaatgaatttttgtttaaaaatgctgccAAAGAAATGCTA
CAAAAACCAGGACAATATTCGAGATGTACTTTCATGTCTAAACCAATCAT
AGATAAAGTTGgaaacGGGAGCCATTACAACCATTCATTATGGAAAGTTA
AAGAAAACGGAGACGTCNTTCGAACTAAATCGTTGGTTATCTCAACTTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00019655-exon-sc0000333-1491911889:271239..271279 | TCONS_00019655-exon-sc0000333-1491911889:271239..271279 | Clytia hemisphaerica | exon |
| TCONS_00019655-exon-sc0000333-1510915933:271239..271279 | TCONS_00019655-exon-sc0000333-1510915933:271239..271279 | Clytia hemisphaerica | exon |
| TCONS_00019655-exon-sc0000333-1575043694:271239..271279 | TCONS_00019655-exon-sc0000333-1575043694:271239..271279 | Clytia hemisphaerica | exon |
| TCONS_00019655-exon-sc0000333-1491911889:272261..272324 | TCONS_00019655-exon-sc0000333-1491911889:272261..272324 | Clytia hemisphaerica | exon |
| TCONS_00019655-exon-sc0000333-1510915933:272261..272324 | TCONS_00019655-exon-sc0000333-1510915933:272261..272324 | Clytia hemisphaerica | exon |
| TCONS_00019655-exon-sc0000333-1575043694:272261..272324 | TCONS_00019655-exon-sc0000333-1575043694:272261..272324 | Clytia hemisphaerica | exon |
| TCONS_00019655-exon-sc0000333-1491911889:275994..277021 | TCONS_00019655-exon-sc0000333-1491911889:275994..277021 | Clytia hemisphaerica | exon |
| TCONS_00019655-exon-sc0000333-1510915933:275994..277021 | TCONS_00019655-exon-sc0000333-1510915933:275994..277021 | Clytia hemisphaerica | exon |
| TCONS_00019655-exon-sc0000333-1575043694:275994..277021 | TCONS_00019655-exon-sc0000333-1575043694:275994..277021 | Clytia hemisphaerica | exon |
| TCONS_00019655-exon-sc0000333-1491911889:277492..277676 | TCONS_00019655-exon-sc0000333-1491911889:277492..277676 | Clytia hemisphaerica | exon |
| TCONS_00019655-exon-sc0000333-1510915933:277492..277676 | TCONS_00019655-exon-sc0000333-1510915933:277492..277676 | Clytia hemisphaerica | exon |
| TCONS_00019655-exon-sc0000333-1575043694:277492..277676 | TCONS_00019655-exon-sc0000333-1575043694:277492..277676 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000333 | supercontig | sc0000333:271239..277676 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0004356 | glutamate-ammonia ligase activity |
| GO:0003824 | catalytic activity |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0006807 | nitrogen compound metabolic process |
| GO:0006542 | glutamine biosynthetic process |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0006542 |
glutamine biosynthetic process |
| biological_process |
GO:0006807 |
nitrogen compound metabolic process |
| molecular_function |
GO:0003824 |
catalytic activity |
| molecular_function |
GO:0004356 |
glutamate-ammonia ligase activity |
Blast
The following BLAST results are available for this feature:
|
