TCONS_00019642 (transcript) - C. hemisphaerica

Overview
NameTCONS_00019642
Unique NameTCONS_00019642
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length349

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00019642 ID=TCONS_00019642|Name=TCONS_00019642|organism=Clytia hemisphaerica|type=transcript|length=349bp
CTGGATGTGGATGGTGTGTTGTTTTGGTTATCTGATTTGACTTTTGCCTA
TATTTCCCTTTGACTGACTTTAGTCATGTTTAGACTCTACAGACAGCAGG
TCCTAATTTCAGCCCTGAATTTAGTTGCTGTTAATTATGAGctttttgtt
ctttatttttagagAAGTTGTTAGAATAAAACAAATCTCATGCTTATTAT
TTTCCAATGGCAATTTGAAGAGTAGCTGATTGACTACTATATGTCTTATA
TAACCGGACCCACCAGACAGCCCATGCAGTAATGTCAACCGAGTAAACCT
AAAAGGGTATTTATCAAATCACATACATCATGGCAGCTGCTTTTTTGNN
Run BLAST on NCBI

transcript from alignment at sc0000332:111946..112294

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00019642 ID=TCONS_00019642|Name=TCONS_00019642|organism=Clytia hemisphaerica|type=transcript|length=349bp|location=Sequence derived from alignment at sc0000332:111946..112294 (Clytia hemisphaerica)
NNCAAAAAAGCAGCTGCCATGATGTATGTGATTTGATAAATACCCTTTTA
GGTTTACTCGGTTGACATTACTGCATGGGCTGTCTGGTGGGTCCGGTTAT
ATAAGACATATAGTAGTCAATCAGCTACTCTTCAAATTGCCATTGGAAAA
TAATAAGCATGAGATTTGTTTTATTCTAACAACTTctctaaaaataaaga
acaaaaagCTCATAATTAACAGCAACTAAATTCAGGGCTGAAATTAGGAC
CTGCTGTCTGTAGAGTCTAAACATGACTAAAGTCAGTCAAAGGGAAATAT
AGGCAAAAGTCAAATCAGATAACCAAAACAACACACCATCCACATCCAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_011053XLOC_011053Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00019642-exon-sc0000332-1491911889:111946..112294TCONS_00019642-exon-sc0000332-1491911889:111946..112294Clytia hemisphaericaexon
TCONS_00019642-exon-sc0000332-1510915933:111946..112294TCONS_00019642-exon-sc0000332-1510915933:111946..112294Clytia hemisphaericaexon
TCONS_00019642-exon-sc0000332-1575043694:111946..112294TCONS_00019642-exon-sc0000332-1575043694:111946..112294Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000332supercontigsc0000332:111946..112294 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.3675	1.82335	1.37575	0	9.73281	7.63013	9.09811	13.4536	5.74005	4.32135	2.39433	5.48551	2.65754	2.34957	2.64244	3.15454	4.57549	3.42889	2.89768	5.31794	5.31338	4.4739	3.62585	5.07278	4.24638	4.57173	21.5203	11.8753	6.91309	5.62193
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00019642 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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