TCONS_00019640 (transcript) - C. hemisphaerica

Overview
NameTCONS_00019640
Unique NameTCONS_00019640
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length262

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00019640 ID=TCONS_00019640|Name=TCONS_00019640|organism=Clytia hemisphaerica|type=transcript|length=262bp
TTATACGTAGACATaggaccttttacatagttctTCTGTCCTTAtgtctt
tttattcattcagcAGCAGACAGTAGAAAATCAGCATCAAATTTGTTTAG
TTCCCTATATAGTGTTCGTTAGCAGTATGAAATTCCAATGGCATTTTGCT
TGATCATaagaacattcttcatattcaatgagaaagaaatcaagaaagtg
ACAAGTGATCCtcttgcatattctgttttgcTTTGGAGAAACAGCTTGGC
TCAAACATTTTG
Run BLAST on NCBI

transcript from alignment at sc0000332:108767..109028

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00019640 ID=TCONS_00019640|Name=TCONS_00019640|organism=Clytia hemisphaerica|type=transcript|length=262bp|location=Sequence derived from alignment at sc0000332:108767..109028 (Clytia hemisphaerica)
CAAAATGTTTGAGCCAAGCTGTTTCTCCAAAgcaaaacagaatatgcaag
aGGATCACTTGTcactttcttgatttctttctcattgaatatgaagaatg
ttcttATGATCAAGCAAAATGCCATTGGAATTTCATACTGCTAACGAACA
CTATATAGGGAACTAAACAAATTTGATGCTGATTTTCTACTGTCTGCTgc
tgaatgaataaaaagacaTAAGGACAGAagaactatgtaaaaggtcctAT
GTCTACGTATAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_011051XLOC_011051Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00019640-exon-sc0000332-1491911889:108767..109028TCONS_00019640-exon-sc0000332-1491911889:108767..109028Clytia hemisphaericaexon
TCONS_00019640-exon-sc0000332-1510915933:108767..109028TCONS_00019640-exon-sc0000332-1510915933:108767..109028Clytia hemisphaericaexon
TCONS_00019640-exon-sc0000332-1575043694:108767..109028TCONS_00019640-exon-sc0000332-1575043694:108767..109028Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000332supercontigsc0000332:108767..109028 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	1.66002	0.721231	0	17.4644	10.8968	5.47323	4.80565	20.8498	23.6706	48.865	27.8412	11.0804	9.69446	3.68614	7.1946	6.68136	5.75814	17.0434	26.9386	46.7784	26.7064	52.5182	46.2517	3.4324	2.74593	43.0936	23.6579	27.0704	27.1374
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00019640 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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