|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00019627 ID=TCONS_00019627|Name=TCONS_00019627|organism=Clytia hemisphaerica|type=transcript|length=1958bp
ATAAGGGTTCTGAATGTTAAGATAATAGAAAATATTCATGTCTCCCTTCT
CTCCTTGGTATCAGTAGGTAGTGGGCAAAAGATATAGACTTTCATATTTT
AATCTCGTGAAATTCTGATATTTTTAATAAACTTTAGTTGTTGATTTTTG
CtaatttcaaatctttgttttagAGGGAACATGAAAATTATTTGAGGAAA
TTTATGAGGGCAACCAGAGCTACGAAGAACTAAAACAAACATGGCGGACT
TGAAATGCTTCGTTAATTTTATCGTAGAGGGATTCATGAACAGTCCGATC
CTACTGGCTACCATCTTGATTATATCCGCCATTATGTATTATAAACGACA
TTTGCAGCAAACATCCGAATACTATACACACCAAATCGAGCAAttgaaat
tacaaaatcaaTTATTGTCGTTGAAAAACGAATACGAGAAAAATCAATTT
ACGAATGAACGAAATTGGATTCAGTTACGAGAGCGAAACGAAAAAATTGA
ACGAGAAATTGAAGACTTGTTGAAGTGTAAagagaaatatgaaaaagaGC
GAGAAAGAGAGGGATCGGTGATCATCGCAACCGAATCTAAGATTTCGGAA
AACGACAATATTCAGGAGTCGTCGCATTTGAGCGACAAACAAGAACTCAA
TACCGAGAAATTACAAATAACAGAAACGAAAAATGTTCGTGAATCAAAAA
CCGATAACGACAATCACattcaaaaactttctaaaCAAGAAAAAGACGAA
GTAGACGAAGAAATAGACAAAGCGAAACTTCGTCGGCACAGATTCGGTGA
ACTTCGTCGTTCGCTTTCATCCTCGTCAATCCCGAGTGAACACGACGACG
AAATCACGACTTATCCACCGATATTTGAGAAACCTACAGATCCGATTAAT
AAGTCGGTTTACGATTACGTCAACTCCCTACCGGCAGTACAATCGTCAAC
CACAAAgatcaaacaacaaaaaacaactaCGACAACAACTACTTTAAGTA
TGAACAATAAGGTAGCACGTCATCAGAACTTGCTCCAAGTACCTGAGATA
ACAATCACTGATACGATTTCCTTTGAGAATTACGAAAGTGTTGAAAAATT
GAGGGAagaatgaaaaaaggaaatttggtTTGGAAGTGCGTAATATCAAT
GCACAATTACATCAACAATACGTTAAAACGGTCCAAAAAAGTAGGTGAAG
CCTTATTCCCAAGGCTACGTCATACCTTCCTTCGTTTCGAACGTAAATAA
CTCCTACTCTTCAGGGTATGCGCActgcttttgttttgaatacTGAATTC
TTCTGGATACATTGCATATGTACGCACTGAGGTTttgatgaaacaataga
gagttttgaaacctaagccaatcaccTGCGTTTTAAACATTCGTTTATtt
taaatctctattgataTGTTTAATCCCATTAAAAAGCGAATTCCCCgtgg
ggtcactagtggccgtcCATAGCAATgtctatagaccaagagtaaaagcc
tggagctgtctattgtgtagactacttATTCCCATACTTCCAAAGGTACA
GTACTAACGGTTAACTATCCAAAAGCtttctcaaaatcaaatcacTTTCT
GGGCACTGATTGGTTTATTAGACTCAATTACATCATAGTTTTGAGATTTA
ACCAATCGGATTGATTTGATCATTGATTATTTGTATTGTAGACAACCTTC
ATCATGGAAGAAactttggcgggaatttaatttggcggatggccgaaaaa
gtttttcagagggaatttaatttggaggttaacttgaaaaattaaatttg
gcggatgaaggatatttttgtccaaaaaacgccattaaaaaaggaaaaac
ctgttttaaagaCTGATATAGCACACACTTGGGGAATAAATAAATTTGTT
GGATGacggaaaaaattaaatttggcgggaacttaatttggtggATCTTT
ACCAAATC Run BLAST on NCBI protein sequence of TCONS_00019627-protein >TCONS_00019627-protein ID=TCONS_00019627-protein|Name=TCONS_00019627-protein|organism=Clytia hemisphaerica|type=polypeptide|length=290bp
MADLKCFVNFIVEGFMNSPILLATILIISAIMYYKRHLQQTSEYYTHQIE
QLKLQNQLLSLKNEYEKNQFTNERNWIQLRERNEKIEREIEDLLKCKEKY
EKEREREGSVIIATESKISENDNIQESSHLSDKQELNTEKLQITETKNVR
ESKTDNDNHIQKLSKQEKDEVDEEIDKAKLRRHRFGELRRSLSSSSIPSE
HDDEITTYPPIFEKPTDPINKSVYDYVNSLPAVQSSTTKIKQQKTTTTTT
TLSMNNKVARHQNLLQVPEITITDTISFENYESVEKLREE Run BLAST on NCBI transcript from alignment at sc0000332:114111..116353- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00019627 ID=TCONS_00019627|Name=TCONS_00019627|organism=Clytia hemisphaerica|type=transcript|length=2243bp|location=Sequence derived from alignment at sc0000332:114111..116353- (Clytia hemisphaerica)
ATAAGGGTTCTGAATGTTAAGATAATAGAAAATATTCATGTCTCCCTTCT
CTCCTTGGTATCAGTAGGTAGTGGGCAAAAGATATAGACTTTCATATTTT
AATCTCGTGAAATTCTGATATTTTTAATAAACTTTAGTTGTTGATTTTTG
CTAATTTCAAATCTTTGTTTTAGAGGGAACATGAAAATTATTTGAGGAAA
TTTATGAGGGCAACCAGAGCTACGAAGAACTAAAACAAACATGGCGGACT
TGAAATGCTTCGTTAATGTAAGTTATTATGCTTTGGATAAATGTAGTGGT
TGTAATACTAATAACCTCTAATTCAAAAATATCTGGTCAATTTTTCAAAA
ATCAATTTTTTAGACATGTAGTTTGGCACATAAATCAGTCAATGATTTTT
AGATATTCAATGTTCAAATTTTTCGAGTTGACGGCCGAAAAAGAGGTGTT
AGAGCTATTTTTGATAATTTTTGTGCCCTTTTGTGTGTTTTCAACACTCC
AAGTTAAATGGAATTCTTTATCCTTTACTAAAAATGCTCATATTTTTTCC
AGTTTATCGTAGAGGGATTCATGAACAGTCCGATCCTACTGGCTACCATC
TTGATTATATCCGCCATTATGTATTATAAACGACATTTGCAGCAAACATC
CGAATACTATACACACCAAATCGAGCAATTGAAATTACAAAATCAATTAT
TGTCGTTGAAAAACGAATACGAGAAAAATCAATTTACGAATGAACGAAAT
TGGATTCAGTTACGAGAGCGAAACGAAAAAATTGAACGAGAAATTGAAGA
CTTGTTGAAGTGTAAAGAGAAATATGAAAAAGAGCGAGAAAGAGAGGGAT
CGGTGATCATCGCAACCGAATCTAAGATTTCGGAAAACGACAATATTCAG
GAGTCGTCGCATTTGAGCGACAAACAAGAACTCAATACCGAGAAATTACA
AATAACAGAAACGAAAAATGTTCGTGAATCAAAAACCGATAACGACAATC
ACATTCAAAAACTTTCTAAACAAGAAAAAGACGAAGTAGACGAAGAAATA
GACAAAGCGAAACTTCGTCGGCACAGATTCGGTGAACTTCGTCGTTCGCT
TTCATCCTCGTCAATCCCGAGTGAACACGACGACGAAATCACGACTTATC
CACCGATATTTGAGAAACCTACAGATCCGATTAATAAGTCGGTTTACGAT
TACGTCAACTCCCTACCGGCAGTACAATCGTCAACCACAAAGATCAAACA
ACAAAAAACAACTACGACAACAACTACTTTAAGTATGAACAATAAGGTAG
CACGTCATCAGAACTTGCTCCAAGTACCTGAGATAACAATCACTGATACG
ATTTCCTTTGAGAATTACGAAAGTGTTGAAAAATTGAGGGAAGAATGAAA
AAAGGAAATTTGGTTTGGAAGTGCGTAATATCAATGCACAATTACATCAA
CAATACGTTAAAACGGTCCAAAAAAGTAGGTGAAGCCTTATTCCCAAGGC
TACGTCATACCTTCCTTCGTTTCGAACGTAAATAACTCCTACTCTTCAGG
GTATGCGCACTGCTTTTGTTTTGAATACTGAATTCTTCTGGATACATTGC
ATATGTACGCACTGAGGTTTTGATGAAACAATAGAGAGTTTTGAAACCTA
AGCCAATCACCTGCGTTTTAAACATTCGTTTATTTTAAATCTCTATTGAT
ATGTTTAATCCCATTAAAAAGCGAATTCCCCGTGGGGTCACTAGTGGCCG
TCCATAGCAATGTCTATAGACCAAGAGTAAAAGCCTGGAGCTGTCTATTG
TGTAGACTACTTATTCCCATACTTCCAAAGGTACAGTACTAACGGTTAAC
TATCCAAAAGCTTTCTCAAAATCAAATCACTTTCTGGGCACTGATTGGTT
TATTAGACTCAATTACATCATAGTTTTGAGATTTAACCAATCGGATTGAT
TTGATCATTGATTATTTGTATTGTAGACAACCTTCATCATGGAAGAAACT
TTGGCGGGAATTTAATTTGGCGGATGGCCGAAAAAGTTTTTCAGAGGGAA
TTTAATTTGGAGGTTAACTTGAAAAATTAAATTTGGCGGATGAAGGATAT
TTTTGTCCAAAAAACGCCATTAAAAAAGGAAAAACCTGTTTTAAAGACTG
ATATAGCACACACTTGGGGAATAAATAAATTTGTTGGATGACGGAAAAAA
TTAAATTTGGCGGGAACTTAATTTGGTGGATCTTTACCAAATC Coding sequence (CDS) from alignment at sc0000332:114111..116353- >TCONS_00019627 ID=TCONS_00019627|Name=TCONS_00019627|organism=Clytia hemisphaerica|type=CDS|length=1746bp|location=Sequence derived from alignment at sc0000332:114111..116353- (Clytia hemisphaerica)
TTTATCGTAGAGGGATTCATGAACAGTCCGATCCTACTGGCTACCATCTT
GATTATATCCGCCATTATGTATTATAAACGACATTTGCAGCAAACATCCG
AATACTATACACACCAAATCGAGCAATTGAAATTACAAAATCAATTATTG
TCGTTGAAAAACGAATACGAGAAAAATCAATTTACGAATGAACGAAATTG
GATTCAGTTACGAGAGCGAAACGAAAAAATTGAACGAGAAATTGAAGACT
TGTTGAAGTGTAAAGAGAAATATGAAAAAGAGCGAGAAAGAGAGGGATCG
GTGATCATCGCAACCGAATCTAAGATTTCGGAAAACGACAATATTCAGGA
GTCGTCGCATTTGAGCGACAAACAAGAACTCAATACCGAGAAATTACAAA
TAACAGAAACGAAAAATGTTCGTGAATCAAAAACCGATAACGACAATCAC
ATTCAAAAACTTTCTAAACAAGAAAAAGACGAAGTAGACGAAGAAATAGA
CAAAGCGAAACTTCGTCGGCACAGATTCGGTGAACTTCGTCGTTCGCTTT
CATCCTCGTCAATCCCGAGTGAACACGACGACGAAATCACGACTTATCCA
CCGATATTTGAGAAACCTACAGATCCGATTAATAAGTCGGTTTACGATTA
CGTCAACTCCCTACCGGCAGTACAATCGTCAACCACAAAGATCAAACAAC
AAAAAACAACTACGACAACAACTACTTTAAGTATGAACAATAAGGTAGCA
CGTCATCAGAACTTGCTCCAAGTACCTGAGATAACAATCACTGATACGAT
TTCCTTTGAGAATTACGAAAGTGTTGAAAAATTGAGGGAAGAATGAATGG
CGGACTTGAAATGCTTCGTTAATTTTATCGTAGAGGGATTCATGAACAGT
CCGATCCTACTGGCTACCATCTTGATTATATCCGCCATTATGTATTATAA
ACGACATTTGCAGCAAACATCCGAATACTATACACACCAAATCGAGCAAT
TGAAATTACAAAATCAATTATTGTCGTTGAAAAACGAATACGAGAAAAAT
CAATTTACGAATGAACGAAATTGGATTCAGTTACGAGAGCGAAACGAAAA
AATTGAACGAGAAATTGAAGACTTGTTGAAGTGTAAAGAGAAATATGAAA
AAGAGCGAGAAAGAGAGGGATCGGTGATCATCGCAACCGAATCTAAGATT
TCGGAAAACGACAATATTCAGGAGTCGTCGCATTTGAGCGACAAACAAGA
ACTCAATACCGAGAAATTACAAATAACAGAAACGAAAAATGTTCGTGAAT
CAAAAACCGATAACGACAATCACATTCAAAAACTTTCTAAACAAGAAAAA
GACGAAGTAGACGAAGAAATAGACAAAGCGAAACTTCGTCGGCACAGATT
CGGTGAACTTCGTCGTTCGCTTTCATCCTCGTCAATCCCGAGTGAACACG
ACGACGAAATCACGACTTATCCACCGATATTTGAGAAACCTACAGATCCG
ATTAATAAGTCGGTTTACGATTACGTCAACTCCCTACCGGCAGTACAATC
GTCAACCACAAAGATCAAACAACAAAAAACAACTACGACAACAACTACTT
TAAGTATGAACAATAAGGTAGCACGTCATCAGAACTTGCTCCAAGTACCT
GAGATAACAATCACTGATACGATTTCCTTTGAGAATTACGAAAGTGTTGA
AAAATTGAGGGAAGAATGAATGGCGGACTTGAAATGCTTCGTTAAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00019627-exon-sc0000332-1575043694:116087..116353 | TCONS_00019627-exon-sc0000332-1575043694:116087..116353 | Clytia hemisphaerica | exon |
| TCONS_00019627-exon-sc0000332-1575043694:114111..115801 | TCONS_00019627-exon-sc0000332-1575043694:114111..115801 | Clytia hemisphaerica | exon |
| TCONS_00019627-exon-sc0000332-1510915933:116087..116353 | TCONS_00019627-exon-sc0000332-1510915933:116087..116353 | Clytia hemisphaerica | exon |
| TCONS_00019627-exon-sc0000332-1510915933:114111..115801 | TCONS_00019627-exon-sc0000332-1510915933:114111..115801 | Clytia hemisphaerica | exon |
| TCONS_00019627-exon-sc0000332-1491911889:116087..116353 | TCONS_00019627-exon-sc0000332-1491911889:116087..116353 | Clytia hemisphaerica | exon |
| TCONS_00019627-exon-sc0000332-1491911889:114111..115801 | TCONS_00019627-exon-sc0000332-1491911889:114111..115801 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000332 | supercontig | sc0000332:114111..116353 - |
Blast
The following BLAST results are available for this feature:
|
