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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00019618 ID=TCONS_00019618|Name=TCONS_00019618|organism=Clytia hemisphaerica|type=transcript|length=1503bpRun BLAST on NCBI protein sequence of TCONS_00019618-protein >TCONS_00019618-protein ID=TCONS_00019618-protein|Name=TCONS_00019618-protein|organism=Clytia hemisphaerica|type=polypeptide|length=480bp MSVLEKKGKGKLDDTVVLKCNITGFVNIDGHTEFKLKVQRGSNPDNSWEVRun BLAST on NCBI transcript from alignment at sc0000332:6171..17511- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00019618 ID=TCONS_00019618|Name=TCONS_00019618|organism=Clytia hemisphaerica|type=transcript|length=11341bp|location=Sequence derived from alignment at sc0000332:6171..17511- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000332:6171..17511- >TCONS_00019618 ID=TCONS_00019618|Name=TCONS_00019618|organism=Clytia hemisphaerica|type=CDS|length=24531bp|location=Sequence derived from alignment at sc0000332:6171..17511- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00019618 vs. Swiss-Prot (Human)
Match: PXK (PX domain-containing protein kinase-like protein OS=Homo sapiens GN=PXK PE=1 SV=1) HSP 1 Score: 394.045 bits (1011), Expect = 4.275e-130 Identity = 211/452 (46.68%), Postives = 295/452 (65.27%), Query Frame = 3
Query: 24 MSVLEKKGKGK--LDDTVVLKCNITGFVNIDGHTEFKLKVQRGSNPDNSWEVMHRYNDFXXXXXXXXXXXVGIEVPFPPKKAFGNMDSAFLQERRFGLQTFMDLVLSNSLFSQNIAVKRFLDPGNYSDNIDXXXXXXXXXFFRSEPNWELQENMKEIGWRVRKHYFSIKSKDGAAKTKYLLSWVEHGPDXXXXXXXXXXXXXXXXXXXXXPFIYPVTYASCTEKGATIVRQFHNTGSLRDVICKAKPHHPRLKKYGNLRIRIPLEFSNIKRIGRQVLEALKFLKDKNWPYGHLHAGNVVVDGNNCRLLDVENGILGLPTLYRSFIMELKAVKDLEAVDVYCFGHFLYEITFGNPLNMAHVGNLPEDCPPMIQPILHSILSTSAVKSGLPSIEDLLANPLFADVPCILNEKPVFKV-NKVKDALRQSKEAIEGRLKEDQKRLRQFNRLSKARS 1370
M+ +EK GK LDDTV L I ++ HTE+ ++VQRG + +NSW+++ RY+DF LN L G+ +P PPKK GNMD F+ ER+ GLQ +++++ +N + S VK+FLDP NYS N ++A QQ +MFFRSEP WE+ E +K+IGWR+RK YF +K K+ K + +LSW + GPD L + + L P+IY VT+A+ E A ++R F+ G+L+D+I KAKP P LKKY N + LE IK GRQ+LE LKFL DK +PYGHLHA NV++DG+ CRLLD+EN +LGLP+ YRS+ + + + LE+VDV+CFGH LYE+T+G P + V + P + +L S LS A K+G+P+I LL PLF+DV +EKP FK+ K+K+ALR +KE IE RL E+QK++ Q RL++A+S
Sbjct: 1 MAFMEKPPAGKVLLDDTVPLTAAIEASQSLQSHTEYIIRVQRGISVENSWQIVRRYSDFDLLNNSLQI--AGLSLPLPPKKLIGNMDREFIAERQKGLQNYLNVITTNHILSNCELVKKFLDPNNYSANYTEIALQQVSMFFRSEPKWEVVEPLKDIGWRIRKKYFLMKIKN-QPKERLVLSWADLGPDKYLSDKDFQCLIKLLPSCLH-PYIYRVTFATANESSALLIRMFNEKGTLKDLIYKAKPKDPFLKKYCNPKKIQGLELQQIKTYGRQILEVLKFLHDKGFPYGHLHASNVMLDGDTCRLLDLENSLLGLPSFYRSYFSQFRKINTLESVDVHCFGHLLYEMTYGRPPDSVPVDSFPPAPSMAVVAVLESTLSCEACKNGMPTISRLLQMPLFSDVLLTTSEKPQFKIPTKLKEALRIAKECIEKRLIEEQKQIHQHRRLTRAQS 448 The following BLAST results are available for this feature:
BLAST of TCONS_00019618 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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