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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00019606 ID=TCONS_00019606|Name=TCONS_00019606|organism=Clytia hemisphaerica|type=transcript|length=1425bp
AATTGATATTACATACTttaattatatgactgattttatttagGTTGCCT
GCTCTTATCCTACGGCGGGGTATTATTTTGTAATACCCCGCTTGATTTGT
AATACCCTGCTCCCGCCAAAAAATTCTAATAATACGCCCTCTTTTCCGTC
GTCCCGCCACAAACAAGACGCAGTTTACAAATACGTAAACAACAAAACTG
TTGAACCATTCAGGAGAAATTAAGATTCTTcacttcatttttagaattaa
tatttttgatcaaaacaaaaccatttTCTCCTAACATAATTTCACGCGCC
GAGTAGTGTTCGAATTTTCCAAACATTCGATTATTTTTGACAACATTCGA
TCACAAAAGTAAGCaggttttttaaaaacaaacacaaataTTTTGAGAAG
ATAACTGTTCGATCAAAATCAAAGGAGGAAAAGTACaagaaaaatgtaca
aagatgacAACAAATTTGAGCTGTTGGATGATGCGATGATGTTATTCTTT
TATTAtggcaaaattctaaaaacatagACACAAACATTTGGATAAATGCA
CTTCTGGGCGAAGTCTCGTGGACTTGAGGAGAACGGGAGAATATATCCGA
ATACGAACCATATAATTTGAACANTTCTTTTATTAtggcaaaattctaaa
aacatagACACAAACATTTGGATAAATGCACTTATGGGCGAAGTCTCGTG
GACTTGAGGAGAACGGGAGAATATATCCGAATACGAACCATATAATTTGA
ACACTTCATTTGTGACCATTTTATGTGGAGATACGCGAAAGAAAGAATAT
GGCACTGATTACGAACCTGACTCGCTGATAATGATGCCGTCTTTGCAAAG
GAGccgaaaatacaatttttatgaAGAATCTTCTTTACCGATAATATTGT
TTGAAAGTNAATTTGAGCTGTTGGATGATGCGATGATGTTATTCTTTTAT
TAtggcaaaattctaaaaacatagACACAAACATTTGGATAAATGCACTT
CTGGGCGAAGTCTCGTGGACTTGAGGAGAACGGGAGAATATATCCGAATA
CGAACCATATAATTTGAACATTTCATTTGTGACCATTTTATGTGGAGATA
CGCGAAAGAAAGAATATGGCACTGATTACGAACTTGACTCGCTGATAATG
ATGCCGTCTTTGCAAAGGAGccgaaaatacaatttttatgaAGAATCTTC
TTTACCGATAATATTGTTTGAAAGTTTGGATAATGGATTATTAGTTTTGT
TGTTTGACATTATATTTATGATATATTCATCTGCAACAATTTGAAAGTGA
TATGGGATGAAATGATTTGTGTTTTGAAGCAATACATCATATTTCTATAG
CAAtacatcaaaaattttctgtcTTAATTCTGGAATCCCCATTTCGGATA
GCTCTTtaagaaataataaaatcag Run BLAST on NCBI protein sequence of TCONS_00019606-protein >TCONS_00019606-protein ID=TCONS_00019606-protein|Name=TCONS_00019606-protein|organism=Clytia hemisphaerica|type=polypeptide|length=134bp
MVTNEMFKLYGSYSDIFSRSPQVHETSPRSAFIQMFVSMFLEFCHNKRIT
SSHHPTAQIXFQTILSVKKILHKNCIFGSFAKTASLSASQVRNQCHILSF
AYLHIKWSQMKCSNYMVRIRIYSPVLLKSTRLRP Run BLAST on NCBI transcript from alignment at sc0000331:286824..288248 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00019606 ID=TCONS_00019606|Name=TCONS_00019606|organism=Clytia hemisphaerica|type=transcript|length=1425bp|location=Sequence derived from alignment at sc0000331:286824..288248 (Clytia hemisphaerica)
ctgattttattatttcttaAAGAGCTATCCGAAATGGGGATTCCAGAATT
AAgacagaaaatttttgatgtaTTGCTATAGAAATATGATGTATTGCTTC
AAAACACAAATCATTTCATCCCATATCACTTTCAAATTGTTGCAGATGAA
TATATCATAAATATAATGTCAAACAACAAAACTAATAATCCATTATCCAA
ACTTTCAAACAATATTATCGGTAAAGAAGATTCTtcataaaaattgtatt
ttcggCTCCTTTGCAAAGACGGCATCATTATCAGCGAGTCAAGTTCGTAA
TCAGTGCCATATTCTTTCTTTCGCGTATCTCCACATAAAATGGTCACAAA
TGAAATGTTCAAATTATATGGTTCGTATTCGGATATATTCTCCCGTTCTC
CTCAAGTCCACGAGACTTCGCCCAGAAGTGCATTTATCCAAATGTTTGTG
TctatgtttttagaattttgccaTAATAAAAGAATAACATCATCGCATCA
TCCAACAGCTCAAATTNACTTTCAAACAATATTATCGGTAAAGAAGATTC
TtcataaaaattgtattttcggCTCCTTTGCAAAGACGGCATCATTATCA
GCGAGTCAGGTTCGTAATCAGTGCCATATTCTTTCTTTCGCGTATCTCCA
CATAAAATGGTCACAAATGAAGTGTTCAAATTATATGGTTCGTATTCGGA
TATATTCTCCCGTTCTCCTCAAGTCCACGAGACTTCGCCCATAAGTGCAT
TTATCCAAATGTTTGTGTctatgtttttagaattttgccaTAATAAAAGA
ANTGTTCAAATTATATGGTTCGTATTCGGATATATTCTCCCGTTCTCCTC
AAGTCCACGAGACTTCGCCCAGAAGTGCATTTATCCAAATGTTTGTGTct
atgtttttagaattttgccaTAATAAAAGAATAACATCATCGCATCATCC
AACAGCTCAAATTTGTTgtcatctttgtacatttttcttGTACTTTTCCT
CCTTTGATTTTGATCGAACAGTTATCTTCTCAAAAtatttgtgtttgttt
ttaaaaaacctGCTTACTTTTGTGATCGAATGTTGTCAAAAATAATCGAA
TGTTTGGAAAATTCGAACACTACTCGGCGCGTGAAATTATGTTAGGAGAa
aatggttttgttttgatcaaaaatattaattctaaaaatgaagtgAAGAA
TCTTAATTTCTCCTGAATGGTTCAACAGTTTTGTTGTTTACGTATTTGTA
AACTGCGTCTTGTTTGTGGCGGGACGACGGAAAAGAGGGCGTATTATTAG
AATTTTTTGGCGGGAGCAGGGTATTACAAATCAAGCGGGGTATTACAAAA
TAATACCCCGCCGTAGGATAAGAGCAGGCAACctaaataaaatcagtcat
ataattaaAGTATGTAATATCAATT Coding sequence (CDS) from alignment at sc0000331:286824..288248 >TCONS_00019606 ID=TCONS_00019606|Name=TCONS_00019606|organism=Clytia hemisphaerica|type=CDS|length=405bp|location=Sequence derived from alignment at sc0000331:286824..288248 (Clytia hemisphaerica)
ATGGTCACAAATGAAATGTTCAAATTATATGGTTCGTATTCGGATATATT
CTCCCGTTCTCCTCAAGTCCACGAGACTTCGCCCAGAAGTGCATTTATCC
AAATGTTTGTGTctatgtttttagaattttgccaTAATAAAAGAATAACA
TCATCGCATCATCCAACAGCTCAAATTNACTTTCAAACAATATTATCGGT
AAAGAAGATTCTtcataaaaattgtattttcggCTCCTTTGCAAAGACGG
CATCATTATCAGCGAGTCAGGTTCGTAATCAGTGCCATATTCTTTCTTTC
GCGTATCTCCACATAAAATGGTCACAAATGAAGTGTTCAAATTATATGGT
TCGTATTCGGATATATTCTCCCGTTCTCCTCAAGTCCACGAGACTTCGCC
CATAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00019606-exon-sc0000331-1491911889:286824..288248 | TCONS_00019606-exon-sc0000331-1491911889:286824..288248 | Clytia hemisphaerica | exon |
| TCONS_00019606-exon-sc0000331-1510915933:286824..288248 | TCONS_00019606-exon-sc0000331-1510915933:286824..288248 | Clytia hemisphaerica | exon |
| TCONS_00019606-exon-sc0000331-1575043694:286824..288248 | TCONS_00019606-exon-sc0000331-1575043694:286824..288248 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000331 | supercontig | sc0000331:286824..288248 . |
Blast
The following BLAST results are available for this feature:
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