TCONS_00019600 (transcript) - C. hemisphaerica

Overview
NameTCONS_00019600
Unique NameTCONS_00019600
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length244

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00019600 ID=TCONS_00019600|Name=TCONS_00019600|organism=Clytia hemisphaerica|type=transcript|length=244bp
GAAAATCTGGCGGGAAAACGAACTTTccggttattcgaagtaaattaTTA
TCCCATTTGGAGATTAGAATAACCATAGTGACTATggaataaccgggagt
ctactgtaTTGCCGCCTGAACGGTATATAATGTTTCCGGGAAAAGTAATC
TTGAACAATCTCAGTgtttaaaaattcatttcataCTCACCCGAATCGTT
ACATCTTTGTCAATACTGGTATGGCTGAAATACATCAAATGGAT
Run BLAST on NCBI

transcript from alignment at sc0000331:170122..170365

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00019600 ID=TCONS_00019600|Name=TCONS_00019600|organism=Clytia hemisphaerica|type=transcript|length=244bp|location=Sequence derived from alignment at sc0000331:170122..170365 (Clytia hemisphaerica)
ATCCATTTGATGTATTTCAGCCATACCAGTATTGACAAAGATGTAACGAT
TCGGGTGAGtatgaaatgaatttttaaacACTGAGATTGTTCAAGATTAC
TTTTCCCGGAAACATTATATACCGTTCAGGCGGCAAtacagtagactccc
ggttattccATAGTCACTATGGTTATTCTAATCTCCAAATGGGATAAtaa
tttacttcgaataaccggAAAGTTCGTTTTCCCGCCAGATTTTC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_011024XLOC_011024Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00019600-exon-sc0000331-1491911889:170122..170365TCONS_00019600-exon-sc0000331-1491911889:170122..170365Clytia hemisphaericaexon
TCONS_00019600-exon-sc0000331-1510915933:170122..170365TCONS_00019600-exon-sc0000331-1510915933:170122..170365Clytia hemisphaericaexon
TCONS_00019600-exon-sc0000331-1575043694:170122..170365TCONS_00019600-exon-sc0000331-1575043694:170122..170365Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000331supercontigsc0000331:170122..170365 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.843482	0	0	0	0	0	1.08443	3.04569	0.710786	1.76085	0	2.80877	0.560973	0.582576	0	0.513994	1.8996	1.94702	0.89664	0	0.815526	2.38671	1.93424	0	4.52805	2.4247	1.15658	0	4.681	3.81536
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00019600 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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