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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00019599 ID=TCONS_00019599|Name=TCONS_00019599|organism=Clytia hemisphaerica|type=transcript|length=1464bp
TTTAGAAGAAGAAGATATCGCCCCTGTGTTTGCCGGATATGAAGCTGTAG
AATTTTAGGGTAAATTTATTTTCGCTGGGAAGACACGAAGGAAGAAtaag
ttaaaattttgtttaaaaaattttattttgaaattgctTGATAAAATCAT
GATAAAAGACTAGAAACAGGTATAACAAAATGTATAACATTACGAGAAag
aattcctagtttcaatacCGTCAGAATaaagatcaaaacaagtaaagaaa
tttctatttgtttttacaatattttttgtGAAGCTATTAGGTGCTATAAG
ATTTCATAAATAGttagatatttttataaaaatttgtgTGTcggtttttt
gtttcttttgagAGAGTTCTTTTTCAATTTAGTTGTAAAGCAAAGAACAA
CAAGTCAAGCTACCATCAACTTTATTCAATTCTGAGCCATCTAGATCGAC
TTTTGGAATGTTTAATTTGGATACAATATTGGAGGTAGCTGGAAGATCAG
ATCGCCACAAAATGGTACCATTAGCACTGACAAGGTTAGCTCCGTCATCT
TCTGGTGTTCTAACAACACTGTACATATGTGTTGCTTTTTCCAAGACAAC
CTTCAGAGCGGCTGAGGCGTCTGGGGAGCCACCACATAGGATAGTGTCTT
CATCGACTGGACTCATACAAGAAATCAAATGGAGGGTGTTTTCGGGAATC
GGGATTGCATGAACGGGATAATTCGGGAATGTTTCTTTAACCTTCAAAAA
ACCAGCTTCATTTGTTCGCCTCGATTGCCCAACAAAGATTTCACGACCAG
TAAACATGACGTCACCACCATCAAGTGTAGCTGGCGATTCCATTTCAACG
ATTTTCAAATGTGGTTCGTTCGTCTTGAAATAGTCTTTCATGATCTTGGT
TTCTGCTTTTCGTGATTCACGCCCTGGGTTGGTGATTAAGACAGTATCGC
CGATAATAACAGCTGGATCCTCAACAAAAACGCAATCTGGTGTCGATTCA
TCTGTTTCCAATACGGTGACCTTGATACCAAGTTTCTCCAAAGATTGAAC
CATGTGTTCATGCTGTTTGACAGCTCTCTCGTAATCCACCAAAGGTTTAT
TCAAATCCATTCGGATTCCTCCATCAACAATGGATCTTGGGATTCTTCTG
CATACGGCTTTTGTGTATTTGAAAACCATTTTCGCAAAATGTATATTTTA
TGGATGGTCTAAAATGTTGTGTCTTGTGTGTTGTGTCAAGTAGTCTGAAC
TGAATGATTAACTAACCACGCTTTTTATACGTGAGGCATGGTATACGGGA
AAAAACCACCCAACCCATTTACAATTACTAGTAAACATTGTTGATTTAAT
TGTATGCAATATTAATTACTTTTTGATGTCATCTGTCCAGTCTCTTGTGT
TTTGTGTTCGACaattacttttttttgaaaaaactaatagCATAATTTTA
TGTTTGAAGTGCGG Run BLAST on NCBI protein sequence of TCONS_00019599-protein >TCONS_00019599-protein ID=TCONS_00019599-protein|Name=TCONS_00019599-protein|organism=Clytia hemisphaerica|type=polypeptide|length=266bp
MVFKYTKAVCRRIPRSIVDGGIRMDLNKPLVDYERAVKQHEHMVQSLEKL
GIKVTVLETDESTPDCVFVEDPAVIIGDTVLITNPGRESRKAETKIMKDY
FKTNEPHLKIVEMESPATLDGGDVMFTGREIFVGQSRRTNEAGFLKVKET
FPNYPVHAIPIPENTLHLISCMSPVDEDTILCGGSPDASAALKVVLEKAT
HMYSVVRTPEDDGANLVSANGTILWRSDLPATSNIVSKLNIPKVDLDGSE
LNKVDGSLTCCSLLYN Run BLAST on NCBI transcript from alignment at sc0000331:158747..160210 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00019599 ID=TCONS_00019599|Name=TCONS_00019599|organism=Clytia hemisphaerica|type=transcript|length=1464bp|location=Sequence derived from alignment at sc0000331:158747..160210 (Clytia hemisphaerica)
CCGCACTTCAAACATAAAATTATGctattagttttttcaaaaaaaagtaa
ttGTCGAACACAAAACACAAGAGACTGGACAGATGACATCAAAAAGTAAT
TAATATTGCATACAATTAAATCAACAATGTTTACTAGTAATTGTAAATGG
GTTGGGTGGTTTTTTCCCGTATACCATGCCTCACGTATAAAAAGCGTGGT
TAGTTAATCATTCAGTTCAGACTACTTGACACAACACACAAGACACAACA
TTTTAGACCATCCATAAAATATACATTTTGCGAAAATGGTTTTCAAATAC
ACAAAAGCCGTATGCAGAAGAATCCCAAGATCCATTGTTGATGGAGGAAT
CCGAATGGATTTGAATAAACCTTTGGTGGATTACGAGAGAGCTGTCAAAC
AGCATGAACACATGGTTCAATCTTTGGAGAAACTTGGTATCAAGGTCACC
GTATTGGAAACAGATGAATCGACACCAGATTGCGTTTTTGTTGAGGATCC
AGCTGTTATTATCGGCGATACTGTCTTAATCACCAACCCAGGGCGTGAAT
CACGAAAAGCAGAAACCAAGATCATGAAAGACTATTTCAAGACGAACGAA
CCACATTTGAAAATCGTTGAAATGGAATCGCCAGCTACACTTGATGGTGG
TGACGTCATGTTTACTGGTCGTGAAATCTTTGTTGGGCAATCGAGGCGAA
CAAATGAAGCTGGTTTTTTGAAGGTTAAAGAAACATTCCCGAATTATCCC
GTTCATGCAATCCCGATTCCCGAAAACACCCTCCATTTGATTTCTTGTAT
GAGTCCAGTCGATGAAGACACTATCCTATGTGGTGGCTCCCCAGACGCCT
CAGCCGCTCTGAAGGTTGTCTTGGAAAAAGCAACACATATGTACAGTGTT
GTTAGAACACCAGAAGATGACGGAGCTAACCTTGTCAGTGCTAATGGTAC
CATTTTGTGGCGATCTGATCTTCCAGCTACCTCCAATATTGTATCCAAAT
TAAACATTCCAAAAGTCGATCTAGATGGCTCAGAATTGAATAAAGTTGAT
GGTAGCTTGACTTGTTGTTCTTTGCTTTACAACTAAATTGAAAAAGAACT
CTctcaaaagaaacaaaaaaccgACAcacaaatttttataaaaatatcta
aCTATTTATGAAATCTTATAGCACCTAATAGCTTCacaaaaaatattgta
aaaacaaatagaaatttctttacttgttttgatctttATTCTGACGgtat
tgaaactaggaattctTTCTCGTAATGTTATACATTTTGTTATACCTGTT
TCTAGTCTTTTATCATGATTTTATCAagcaatttcaaaataaaatttttt
aaacaaaattttaacttaTTCTTCCTTCGTGTCTTCCCAGCGAAAATAAA
TTTACCCTAAAATTCTACAGCTTCATATCCGGCAAACACAGGGGCGATAT
CTTCTTCTTCTAAA Coding sequence (CDS) from alignment at sc0000331:158747..160210 >TCONS_00019599 ID=TCONS_00019599|Name=TCONS_00019599|organism=Clytia hemisphaerica|type=CDS|length=801bp|location=Sequence derived from alignment at sc0000331:158747..160210 (Clytia hemisphaerica)
ATGGTTTTCAAATACACAAAAGCCGTATGCAGAAGAATCCCAAGATCCAT
TGTTGATGGAGGAATCCGAATGGATTTGAATAAACCTTTGGTGGATTACG
AGAGAGCTGTCAAACAGCATGAACACATGGTTCAATCTTTGGAGAAACTT
GGTATCAAGGTCACCGTATTGGAAACAGATGAATCGACACCAGATTGCGT
TTTTGTTGAGGATCCAGCTGTTATTATCGGCGATACTGTCTTAATCACCA
ACCCAGGGCGTGAATCACGAAAAGCAGAAACCAAGATCATGAAAGACTAT
TTCAAGACGAACGAACCACATTTGAAAATCGTTGAAATGGAATCGCCAGC
TACACTTGATGGTGGTGACGTCATGTTTACTGGTCGTGAAATCTTTGTTG
GGCAATCGAGGCGAACAAATGAAGCTGGTTTTTTGAAGGTTAAAGAAACA
TTCCCGAATTATCCCGTTCATGCAATCCCGATTCCCGAAAACACCCTCCA
TTTGATTTCTTGTATGAGTCCAGTCGATGAAGACACTATCCTATGTGGTG
GCTCCCCAGACGCCTCAGCCGCTCTGAAGGTTGTCTTGGAAAAAGCAACA
CATATGTACAGTGTTGTTAGAACACCAGAAGATGACGGAGCTAACCTTGT
CAGTGCTAATGGTACCATTTTGTGGCGATCTGATCTTCCAGCTACCTCCA
ATATTGTATCCAAATTAAACATTCCAAAAGTCGATCTAGATGGCTCAGAA
TTGAATAAAGTTGATGGTAGCTTGACTTGTTGTTCTTTGCTTTACAACTA
A
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00019599-exon-sc0000331-1491911889:158747..160210 | TCONS_00019599-exon-sc0000331-1491911889:158747..160210 | Clytia hemisphaerica | exon |
| TCONS_00019599-exon-sc0000331-1510915933:158747..160210 | TCONS_00019599-exon-sc0000331-1510915933:158747..160210 | Clytia hemisphaerica | exon |
| TCONS_00019599-exon-sc0000331-1575043694:158747..160210 | TCONS_00019599-exon-sc0000331-1575043694:158747..160210 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000331 | supercontig | sc0000331:158747..160210 . |
Blast
BLAST of TCONS_00019599 vs. Swiss-Prot (Human)
Match: DDAH1 (N(G),N(G)-dimethylarginine dimethylaminohydrolase 1 OS=Homo sapiens GN=DDAH1 PE=1 SV=3) HSP 1 Score: 176.407 bits (446), Expect = 1.889e-50 Identity = 115/276 (41.67%), Postives = 156/276 (56.52%), Query Frame = -1
Query: 382 KYTKAVCRRIPRSIVDGGIRMDLNKPLVDYERAVKQHEHMVQSL-EKLGIKVTVLETDESTPDCVFVEDPAVIIGDTVLITNPGRESRKAETKIMKDYFKTNEPHLKIVEMESP-ATLDGGDVMFTGREIFVGQSRRTNEAGFLKVKETFPNYPVHAIPIPENTLHLISCMSPVDEDTILCGGSPDASAALKVVLEKATHMYSVVRTPEDDGANLVSAN----GTILWR---SDLPATSNIVSKLN----IPKVDLDGSELNKVDGSLTCCSLLYN 1170
+ T AV R +P S+ +R + VD RA +QH+ V L KLG++V L DES PDCVFVED AV+ +T LIT PG SR+ E +MK+ + + L IVEM+ ATLDGGDV+FTGRE FVG S+RTN+ G + +TF +Y V +P+ + LHL S S + I G S A ALK++ + + H Y + P+D AN + N G +L + P ++ + KL IP + SEL KVDG LTCCS+L N
Sbjct: 12 RATHAVVRALPESLGQHALRSAKGEE-VDVARAERQHQLYVGVLGSKLGLQVVELPADESLPDCVFVEDVAVVCEETALITRPGAPSRRKEVDMMKEALEKLQ--LNIVEMKDENATLDGGDVLFTGREFFVGLSKRTNQRGAEILADTFKDYAVSTVPVADG-LHLKSFCSMAGPNLIAIGSSESAQKALKIMQQMSDHRYDKLTVPDDIAANCIYLNIPNKGHVLLHRTPEEYPESAKVYEKLKDHMLIP---VSMSELEKVDGLLTCCSVLIN 280
The following BLAST results are available for this feature:
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