TCONS_00019598 (transcript) - C. hemisphaerica

Overview
NameTCONS_00019598
Unique NameTCONS_00019598
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length422

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00019598 ID=TCONS_00019598|Name=TCONS_00019598|organism=Clytia hemisphaerica|type=transcript|length=422bp
gaaactctcataaacgacgctctactattcgatacactccTTTATTCGAT
GGAAACTCGATtctccttgaagatcgaattagagagcgtcaactgtattc
ttAATATATTCTATAAAACCAATGGGACCATGTAATTATAATCTTGAGAA
GAGTGTATCGTGTGATGTTTTTTTGCATGAGTTAACTTTCCGGAATAAGA
GCCAAAACAAGTCGCAACGCACCAAGGTTCGCGGCGAATTGGTTATTTGC
ACTTTTTATTTTGCCTTGCAGCTCAGTATCCTGCTCTGATAGTCTCCTTC
GATCGGGCGATGCAATGCGGCGGAACGATTtatagacgatcctatcgtct
acacattatcactgaaaaaggaaataattcaggaagcgggataaatttga
aaacgagttTCGTTCGGGGCGG
Run BLAST on NCBI

transcript from alignment at sc0000331:150088..150509

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00019598 ID=TCONS_00019598|Name=TCONS_00019598|organism=Clytia hemisphaerica|type=transcript|length=422bp|location=Sequence derived from alignment at sc0000331:150088..150509 (Clytia hemisphaerica)
CCGCCCCGAACGAaactcgttttcaaatttatcccgcttcctgaattatt
tcctttttcagtgataatgtgtagacgataggatcgtctataAATCGTTC
CGCCGCATTGCATCGCCCGATCGAAGGAGACTATCAGAGCAGGATACTGA
GCTGCAAGGCAAAATAAAAAGTGCAAATAACCAATTCGCCGCGAACCTTG
GTGCGTTGCGACTTGTTTTGGCTCTTATTCCGGAAAGTTAACTCATGCAA
AAAAACATCACACGATACACTCTTCTCAAGATTATAATTACATGGTCCCA
TTGGTTTTATAGAATATATTaagaatacagttgacgctctctaattcgat
cttcaaggagaATCGAGTTTCCATCGAATAAAggagtgtatcgaatagta
gagcgtcgtttatgagagtttc
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_011022XLOC_011022Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00019598-exon-sc0000331-1491911889:150088..150509TCONS_00019598-exon-sc0000331-1491911889:150088..150509Clytia hemisphaericaexon
TCONS_00019598-exon-sc0000331-1510915933:150088..150509TCONS_00019598-exon-sc0000331-1510915933:150088..150509Clytia hemisphaericaexon
TCONS_00019598-exon-sc0000331-1575043694:150088..150509TCONS_00019598-exon-sc0000331-1575043694:150088..150509Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000331supercontigsc0000331:150088..150509 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.50479	0.818178	1.62845	1.17605	0	0.558394	0.230143	0.205591	0.725106	0.347714	0	0.225764	0.334724	0.23443	1.47099	0.734811	0.387066	1.05143	0.565685	0.38429	0.683148	0.729624	0.605145	1.49023	0	0.816638	0.253593	0	1.50677	3.48254
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00019598 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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