TCONS_00019585 (transcript) - C. hemisphaerica

Overview
NameTCONS_00019585
Unique NameTCONS_00019585
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2239

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00019585 ID=TCONS_00019585|Name=TCONS_00019585|organism=Clytia hemisphaerica|type=transcript|length=2239bp
AACGATGAATAAACGATTGGCATTGCTTCATTAAATGGCCCAGGAAGATT
ACGACCGCGATAAGCTTGAATCATTGATACACCATGtaaaactattgcta
gaactacCTGTAAATTGAAATGAGGCATAGTATTACATTGATAGATTCTC
TCATATTTCGCATAGTTCAATTCAATGTTTATGTGGATTGGTTTTGTCTT
CAAACTTAATAGCAAAGCAACTAAATTAATCGAACCCAGTACTAGTACAA
ATAATACTTGAGTCACCAGTGTTTTCCTCTTAACACCTTTCGTTAGGCGT
AATTTTGAATTGAATGCTAGTAACATATTTTGACATTTCACCAGGATTAA
TGTGTATGGCCAAAACACTAATATTGATGTTGTTATCAATTCAAGCAAAC
AAACCAGCTgcgatgttttgaaaatagtgTAAGGTAAAGGGACAATAATA
AAAAGGGTAGTCATCGATAGTATGTGTAATAGCATCAGGGGAAAGTTTGA
TCCTCGAACAACAATAGTCTTGttgaatttcaagaaaacaaCAAGGGTAG
TAAAGCTTATGACAAATCCAGTTATACATAAAGCAAAAGCTATCTGCAGA
CCTATTTGGTTGTGAAAATTGATATAGATATCTGAATATGGGTCATAACA
AGAATCTCTTGAAGCAGTAGAGAGTTTCAGTTTATGACAAGGGGAACAAG
AGACGTGTACTTTTGTGTTGCTtggtttgaaaaaattcaaaggacATTGT
CGGCAACTCCATCCATAAGAATCATTGCTCCATATTCCACGCAATTCCTG
CGGGAGTTTGCCAAAACGGTTCTCTTTACCTGCCTTGCATGTTTGAACTG
GGCAAACTTCTGATTCAGTTGTAGAGTACGTTGGTTTATTGAACGTTTCT
CGTGCAAAGTGATACTTGATTATATTCATATCTTTTTTATCGTAGGTGGT
GGAGATTACAAATAAACTTCGTATATCATCATTGTTTGATTTCGTTCGTT
TGACTATACCTTTTTTGAATTTGGAGTAATCAATTGAATCGAATAAATTG
ATCGAGTTATAAATTTGCATGAGTTGAAGAATCTTCAGTAAATGGTTGTT
TAACACATTATTACAGTCGTGAGCTGTTGTTCGTTCAGCAGTGCTCTAAG
TATCAAAACATCTTGGAAGAGGCAAAGAAAGTATTTACTTTGACATGGCT
TCAACAAATATCTTGAAACTTCCTTCATCAGGAGCAGAGGACAAGGAGCT
GTCGAGTGAGATCGTTCTCAAATCTAAAGAGTCGTTGATGCAAGGCAATG
TGATTGCAGTTCCCACAGACACCATCTACGGTGTGGCGGCGCTGGCTCAA
TCTACGCAAGCTGTCGATAAGATGTATGATATCAAGCAACGTCATAAAGA
AAAAGCTGTCTCCATCTGTGTTGGTACTATCAATGACGTGAAAAAATGGG
GTAAAGTAAGTGTCAGTGACGAATTATTGAACGACTTGCTGCCTGGGCCA
GTGACATTGATCTTCAAAAGAGTCGACGACCTCAACCCTGAGTTGAACCC
GACACACGATTCCATTGGCATCAGAATACCATTGTGTCCATTTATTCAGA
ATCTTGCCAAGGCTTGCCAACAGCCACTTGCTTTGACCAGTGCTAACATA
TCAAGTGCTAGAAGCACTCTCAAAAttaagGAATTTGAAGAGATTTGGCC
AAAACTTGACATCATCGTTGACGGAGGTACTCTGAGCAATTCAGAACAAT
CAAGAAGTGGATCCACCATTGTTGATCTGTCAAGTCCTGGCCAATTCTCC
ATCGTTAGAGATGGCTGTGCTTACGATCGAGTCATTTCTATACTTGAAGG
AAAACATAAGCTGAGTAATTGTTCAGGTTGATGCGTATATATCATTTTTT
CTTGGGATGTTAAGGATGTATGTAAAACGGCGATGAGCCTATTCATCAAA
TGCACCTCCAGATTTCATTGCAGGCATTTGTTTTGGGAAGATCCTACAAA
GCTACCTAAATGACAATATGTATTATGTTAGTGATGGGATAAGCCCCTTC
TGTGATGAAGTTTCTTGTGGTGAGATACAATCTATGGATTTCTAAAGGAA
ATTCGATTTGCGTGAGACATAACAAAACTACCTTTATTGAGagtttttta
tcttatttatcattttacttttttatataaCTTTCTAAATGTATTTAGTC
ACTTTTTGATACCACAAGAGAGACGCAGAGTCTACACAA
Run BLAST on NCBI

transcript from alignment at sc0000331:278967..284038-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00019585 ID=TCONS_00019585|Name=TCONS_00019585|organism=Clytia hemisphaerica|type=transcript|length=5072bp|location=Sequence derived from alignment at sc0000331:278967..284038- (Clytia hemisphaerica)
AACGATGAATAAACGATTGGCATTGCTTCATTAAATGGCCCAGGAAGATT
ACGACCGCGATAAGCTTGAATCATTGATACACCATGTAAAACTATTGCTA
GAACTACCTGTAAATTGAAATGAGGCATAGTATTACATTGATAGATTCTC
TCATATTTCGCATAGTTCAATTCAATGTTTATGTGGATTGGTTTTGTCTT
CAAACTTAATAGCAAAGCAACTAAATTAATCGAACCCAGTACTAGTACAA
ATAATACTTGAGTCACCAGTGTTTTCCTCTTAACACCTTTCGTTAGGCGT
AATTTTGAATTGAATGCTAGTAACATATTTTGACATTTCACCAGGATTAA
TGTGTATGGCCAAAACACTAATATTGATGTTGTTATCAATTCAAGCAAAC
AAACCAGCTGCGATGTTTTGAAAATAGTGTAAGGTAAAGGGACAATAATA
AAAAGGGTAGTCATCGATAGTATGTGTAATAGCATCAGGGGAAAGTTTGA
TCCTCGAACAACAATAGTCTTGTTGAATTTCAAGAAAACAACAAGGGTAG
TAAAGCTTATGACAAATCCAGTTATACATAAAGCAAAAGCTATCTGCAGA
CCTATTTGGTTGTGAAAATTGATATAGATATCTGAATATGGGTCATAACA
AGAATCTCTTGAAGCAGTAGAGAGTTTCAGTTTATGACAAGGGGAACAAG
AGACGTGTACTTTTGTGTTGCTTGGTTTGAAAAAATTCAAAGGACATTGT
CGGCAACTCCATCCATAAGAATCATTGCTCCATATTCCACGCAATTCCTG
CGGGAGTTTGCCAAAACGGTTCTCTTTACCTGCCTTGCATGTTTGAACTG
GGCAAACTTCTGATTCAGTTGTAGAGTACGTTGGTTTATTGAACGTTTCT
CGTGCAAAGTGATACTTGATTATATTCATATCTTTTTTATCGTAGGTGGT
GGAGATTACAAATAAACTTCGTATATCATCATTGTTTGATTTCGTTCGTT
TGACTATACCTTTTTTGAATTTGGAGTAATCAATTGAATCGAATAAATTG
ATCGAGTTATAAATTTGCATGAGTTGAAGAATCTTCAGTAAATGGTTGTT
TAACACATTATTACAGTCGTGAGCTGTTGTTCGTTCAGCAGTGGTAAGTC
TTGTCAAGTTATTGCGATGTTTTATGTAATAAAGAACACCATCGAGGGTC
TCTGTTGAAAACTCTTGTTTACTGAAAGTGTAAGGTTGGACTAGGTGGCT
TTCTATGAAAAACTGGTCTTGCATTGTTGACTGGTCCTTCATGTCCAAAA
GAAATATAGATTGCTTTACTTTAAGATGTGAAGTATTTTTATGAAACTTC
TTATAATAATTTGTGTACGTTGCCAGAAATTGCCAGTTGTGTCTTGGATC
GCCTATCACTAATAAAGTATCATGTGTCTTATTGGTTGTAATAACTGCGT
CGAAAAGAAGTTGGATGTTTTTATCATCTGAGATATCAAGATGGTATACC
TTTGGGCAAAGCTGCAGTTTCTGGATCTTTTTGTCTAGAACTTGTTTGAA
ATGATCATGATCTAGTTCATAAGATGAAGAATTACTTTGGATATAAATGA
CAACAAACTCTTTTGCTTGGTTGTAACTTTTAGGTTGATATGGGTTGTCT
TGGAGTGCACTTGTCTGATTATTGATGAGGTGTAGTAAATTCTTGGCATT
GATCGAAAAAGCCTCATCTTTGGCGAAGAGATTCGAACCTTTCAGACCTG
GAATAATTCTCTGTCCGTCACCAATGAGCCAAACAGCGAAATCTGAATCA
GCAAACATTGCCTGCAACACTTTAGAGATTTCCAAAGGAGCATGGACAAC
TAAAAGAATGATTCTGGAAGTACGTTGCCATTGTTTGATCTCCTTTTTGT
TCCATTTTGGTGGATGCTGAGTTTTGTTGGAGATGAAATATGTTTGGTTT
AGTTTTACATCTGTTGCTATTTTGATAGCCTCTTGGTACTCGCAAAAGCT
TACTTGCTTTAGCTCAAAATCGTTCATTGTCAAGTCACCGATGTTATCGT
ACATTCTGTATTTTACAAAGTCATTCCACTTTAAATTCTTGTCTTCAAAA
GCATAGCCAACAGTGTTTTTACAAATATTCGATTGAGTGACATTCTCATC
TCTTGGACATTGATAGTAAAGCCCAACGATAATCATTGGATTATTTCCTG
GTCTCAATGTTTGATTTAGTGATAATCCAGTGTGGATTATTATGAATATC
AACTTGAAGAAGCTCTGTGTTGCTGTAATCATTTCTTCAACGAACGAATG
CGCCAAAGACTTTTTTCATATCAGAAATCCGTCATTCTATTTTAGCTCTA
AGTATCAAAACATCTTGGAAGAGGCAAAGAAAGTATTTACTTTGACATGG
CTTCAACAAATATCTTGAAACTTCCTTCATCAGGTGTGAAAAATTAGAAT
ATTTGCGAAAAATATCTCAACATGAATTTAATTTTTATGTTGAAGTTAAA
TAATTTCAAAATAAAAGCCTTTGCCGGCCTTTGGATCAAATTTTTTCTCT
TCTTTTCTTTTTTTCCTTTTTTTCTTTTTTTTTTTAAATGAAGATGAAAA
CAAAAAAGAAAAAAATGAAGATCATGTAAAAAAGTGCTACAACTATTATT
TTCACTGAAGTGAATCCTTTATCATCGAACGTCATCACTGTGAAAAAATT
TCTCAAAAATAATCATTCAGTCAAGAGATATTAAACAAAGTTATAAGCTG
ATCGACGTCTAAAAACGCTGTTTCTGCTGTTTTTTGGGTCAATCACTTTA
TTAACTTTGTATCATAACTTATATTGAATAAATATTTTAGTAAAATTTTT
TCACAGTGATGACCAAAGTGATGATCAAAGAATCTCTCCAGTGAAAATGA
AAGTTATAGCACTTTTCTAGAAGATCTTCGTTTTTTTCTTCTTCGTTTTC
ATCTTCATTTTTAGAATTTTTAAAAATATTTTTCTATTTCAAATTGTTCC
ACTCACTAATATCTTTCCAATGATACCAAATTTATAAAGATTGAAGAATT
CCTTCAAAAGTTATACCTTAAGGGAACTTATTTTGGCGGGAACTAATTTT
GGCGAATTTGGCGAATTTAGACAAAATTCGCTAAAATTAGTTCCCGCCAA
AATTAAATATTTTGCTCATTCGCCAAAATAAGTTCTCGCCAAAATTAAAT
TTTTTGGTATTTTGCCTAAATAACTTGTTGAGATCACAAAAAAGCTTCGA
ACAAGGCAAAATAAAACAGATTTACGCTGTCATTCGCCAAAATAAAAAAA
ATCATCAATCGCCAAAATAAGATCTCGTCAAAATTATAAATGTTCAGGAT
TTTTGCCGCTCGTCAAAATTAGTTCCCGCCAAAATAAGTTCCCTTAAGGT
AGGTAAAAGAAAAAAGAGTGCACACTTATCGTGAATAGACTTCAGTTATT
AATGTGATCACTTTTTTCAAATCTTCGCAAACATTCTCATTTATATTATC
TGTGTATTTCTTCATTCATTAGGAGCAGAGGACAAGGAGCTGTCGAGTGA
GATCGTTCTCAAATCTAAAGAGTCGTTGATGCAAGGCAATGTGATTGCAG
TTCCCACAGACACCATCTACGGTGTGGCGGCGCTGGCTCAATCTACGCAA
GCTGTCGATAAGATGTATGATATCAAGCAACGTCATAAAGAAAAAGCTGT
CTCCATCTGTGTTGGTACTATCAATGACGTGAAAAAGTATAATACTTTAT
TCAGCTTTCTTTTACTTGACAATCAACTCAGTTGTAACCACTTGCTTCAT
CTAGATATTTACAAAGATTCTCCATGAAGAACTATCCACGCTAAATCTCT
TTTCTTATTTAGATCCCTTGCGTAAAATGACAACGCAAAGACTGCGGCTT
TCATTAGAATATGACATCTTCGAAGGATCAGTAGGCAGCTGCTGGCACTT
TCAAATCCAAAAACTGGCTAAAGAGACGGTTGTGTTGAAATCTCATTATC
TTTTCTCTTCTTTCACGGTTAGATGGGGTAAAGTAAGTGTCAGTGACGAA
TTATTGAACGACTTGCTGCCTGGGCCAGTGACATTGATCTTCAAAAGAGT
CGACGACCTCAACCCTGAGTTGAACCCGACACACGATTCCATTGGCATCA
GAATACCATTGTGTCCATTTATTCAGAATCTTGCCAAGGCTTGCCAACAG
CCACTTGCTTTGACCAGTGCTAACATATCAAGTGCTAGAAGCACTCTCAA
AATTAAGGTTTGTTTTTAAATTAAGGTTTGATTACAGAATTCAGACTTTC
ATGCCATCTGTTAAGAATCCCTTCCCTTCCCTGAAGTCCTTCCCTTGTTA
TTTCACGTTTTTTGTTTATAAGCATAGCCAGGCTGAGGTTTGGACTTGAA
AACAATAGAATTATTGATGTAGAACAAAATGAATTAATTTTTATGCCCAG
CACCAGCTCAAACCCTATGCTTTATAAGAAAGAAACGTGTATTACGTATT
TTCTAACTAATAGGAATTTGAAGAGATTTGGCCAAAACTTGACATCATCG
TTGACGGAGGTACTCTGAGCAATTCAGAACAATCAAGAAGTGGATCCACC
ATTGTTGATCTGTCAAGTCCTGGCCAATTCTCCATCGTTAGAGATGGCTG
TGCTTACGATCGAGTCATTTCTATACTTGAAGGAAAACATAAGCTGAGTA
ATTGTTCAGGTTGATGCGTATATATCATTTTTTCTTGGGATGTTAAGGAT
GTATGTAAAACGGCGATGAGCCTATTCATCAAATGCACCTCCAGATTTCA
TTGCAGGCATTTGTTTTGGGAAGATCCTACAAAGCTACCTAAATGACAAT
ATGTATTATGTTAGTGATGGGATAAGCCCCTTCTGTGATGAAGTTTCTTG
TGGTGAGATACAATCTATGGATTTCTAAAGGAAATTCGATTTGCGTGAGA
CATAACAAAACTACCTTTATTGAGAGTTTTTTATCTTATTTATCATTTTA
CTTTTTTATATAACTTTCTAAATGTATTTAGTCACTTTTTGATACCACAA
GAGAGACGCAGAGTCTACACAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_011011XLOC_011011Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00019585-exon-sc0000331-1575043694:282896..284038TCONS_00019585-exon-sc0000331-1575043694:282896..284038Clytia hemisphaericaexon
TCONS_00019585-exon-sc0000331-1575043694:281606..281693TCONS_00019585-exon-sc0000331-1575043694:281606..281693Clytia hemisphaericaexon
TCONS_00019585-exon-sc0000331-1575043694:280303..280516TCONS_00019585-exon-sc0000331-1575043694:280303..280516Clytia hemisphaericaexon
TCONS_00019585-exon-sc0000331-1575043694:279782..280016TCONS_00019585-exon-sc0000331-1575043694:279782..280016Clytia hemisphaericaexon
TCONS_00019585-exon-sc0000331-1575043694:278967..279525TCONS_00019585-exon-sc0000331-1575043694:278967..279525Clytia hemisphaericaexon
TCONS_00019585-exon-sc0000331-1510915933:282896..284038TCONS_00019585-exon-sc0000331-1510915933:282896..284038Clytia hemisphaericaexon
TCONS_00019585-exon-sc0000331-1510915933:281606..281693TCONS_00019585-exon-sc0000331-1510915933:281606..281693Clytia hemisphaericaexon
TCONS_00019585-exon-sc0000331-1510915933:280303..280516TCONS_00019585-exon-sc0000331-1510915933:280303..280516Clytia hemisphaericaexon
TCONS_00019585-exon-sc0000331-1510915933:279782..280016TCONS_00019585-exon-sc0000331-1510915933:279782..280016Clytia hemisphaericaexon
TCONS_00019585-exon-sc0000331-1510915933:278967..279525TCONS_00019585-exon-sc0000331-1510915933:278967..279525Clytia hemisphaericaexon
TCONS_00019585-exon-sc0000331-1491911889:282896..284038TCONS_00019585-exon-sc0000331-1491911889:282896..284038Clytia hemisphaericaexon
TCONS_00019585-exon-sc0000331-1491911889:281606..281693TCONS_00019585-exon-sc0000331-1491911889:281606..281693Clytia hemisphaericaexon
TCONS_00019585-exon-sc0000331-1491911889:280303..280516TCONS_00019585-exon-sc0000331-1491911889:280303..280516Clytia hemisphaericaexon
TCONS_00019585-exon-sc0000331-1491911889:279782..280016TCONS_00019585-exon-sc0000331-1491911889:279782..280016Clytia hemisphaericaexon
TCONS_00019585-exon-sc0000331-1491911889:278967..279525TCONS_00019585-exon-sc0000331-1491911889:278967..279525Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000331supercontigsc0000331:278967..284038 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
6.96761	5.74912	3.13053	2.92606	19.3224	15.8735	14.3591	14.0926	9.49469	11.7197	10.3399	10.2373	7.34784	9.29204	8.09905	9.80758	12.0648	12.3141	8.14856	7.24512	8.91128	9.27477	11.5457	11.4856	8.17289	8.86117	8.39554	7.67296	6.93981	6.83609
Blast
[Close]
BLAST of TCONS_00019585 vs. Swiss-Prot (Human)
Match: YRDC (YrdC domain-containing protein, mitochondrial OS=Homo sapiens GN=YRDC PE=1 SV=1)

HSP 1 Score: 194.897 bits (494), Expect = 5.246e-56
Identity = 98/226 (43.36%), Postives = 153/226 (67.70%), Query Frame = 1 
Query: 1207 NILKLPSSGA-----EDKELSSEIVLKSKESLMQGNVIAVPTDTIYGVAALAQSTQAVDKMYDIKQRHKEKAVSICVGTINDVKKWGKVSVSDELLNDLLPGPVTLIFKRVDDLNPELNPTHDSIGIRIPLCPFIQNLAKACQQPLALTSANISSARSTLKIKEFEEIWPKLDIIVDGGTLSN--SEQSRSGSTIVDLSSPGQFSIVRDGCAYDRVISILEGKHKL 1863
             +L+LP SGA      ++   +E +  +   L  G V+AVPTDT+YG+A  A  + A+  +Y +K R + K +++C+G + DV ++ +V V + LL DLLPGPVTL+ +R ++LN +LNP    +GIRIP   F+Q+LA+  + PLALTSAN+SS  S+L ++EF+++WP+L +++DGG + +  S + R GST+VDLS PG+F I+R GCA +   +IL+ K+ L
Sbjct:   46 RLLRLPGSGAVQAASPERAGWTEALRAAVAELRAGAVVAVPTDTLYGLACAASCSAALRAVYRLKGRSEAKPLAVCLGRVADVYRYCRVRVPEGLLKDLLPGPVTLVMERSEELNKDLNPFTPLVGIRIPDHAFMQDLAQMFEGPLALTSANLSSQASSLNVEEFQDLWPQLSLVIDGGQIGDGQSPECRLGSTVVDLSVPGKFGIIRPGCALESTTAILQQKYGL 271
The following BLAST results are available for this feature:
BLAST of TCONS_00019585 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
YRDC5.246e-5643.36YrdC domain-containing protein, mitochondrial OS=H... [more]
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