TCONS_00019576 (transcript) - C. hemisphaerica

Overview
NameTCONS_00019576
Unique NameTCONS_00019576
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1839

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00019576 ID=TCONS_00019576|Name=TCONS_00019576|organism=Clytia hemisphaerica|type=transcript|length=1839bp
AAAAAAAGAAGAGATGCATGATCGGTTGAAGCAAAGGCTGCTCAATTACA
TGTGCATCTTCTTTACATTGATGTGTTTTGGCAAGCTTTATCTGAGAGAT
AACTCAAAGGTCAATGATCACCAACATCTTGTGGGGGACTCATGGAGCCT
CAATGAACACGAAATACAAACCAACCTGGATAAAGAATACAATAGGCTTA
GAAGAAATCATGCTGCTAAGAAGCCAGGCAATGTGAATAGCGAGGATGAT
GAAGATGATGGTGTTGATTATGGAGCACACAAATTAGCCATCATTGTTCC
ATATCGAAATCGATTCGAAGAATTGAAAGACTTTGTGCCACACatgaaaa
aatatctaaaagaGAAGAAGATTCGAAATCATATTTATATCATCAACCAA
GCTGACAACCACAGGTTTAACCGTGCATCATTGATCAACGTCGGCCACAC
CATCGCGTACAATGATAAATGTGACTATATGGCAATGCATGATGTCGACC
TTTTACCATTGAACAAGCAATTGAATTATGGGTACCCAGAATTGGGACCC
TTTCACGTTGCAGGGCCCAATCTCCATCCAAAGTACCATTATGAGAAGTT
TGTCGGTGGTATTTTAATATTAACCATGACTCAATTCAACGAGTTGAACG
GAATGTCCAACAAGTTTTGGGGTTGGGGTCGTGAAGATGACGAATTTTAC
ATGCGAATGGTGGATTCCAATTACAAGattttccgcCATGGTAGTGAGAT
TACGACAGGATACAACACATTTAAACACGAGCATTCTGTGGAACGAAAAC
GAGATTACGCCAAATTACCCGGACAAAAGAAGTCGATGTTCAGTCGTGAT
CACGACACCGGTTTATCGACCTTAGTGTACAACCAGAAGAAGCGAAGTGA
GTTCACTATCGATGGATACCCATGCACGGTCATCGATGTAGAATTGGAAT
GTGACAAAAATCTCACTCCCTGGTGCGATGTGCCACCTGCcaagaaaaaa
cgattttaggtataaatttttaacaaacgCTTAGAGTTTTATCCAATTTT
AGTGCTAGAATTTTTACATTTATAGTCTTGACTTTACTTTAACCTGCTTA
TTCTATCAACTGGATACTTTAAGTGGATTGCCGAATGACTAAAATGCGTT
TTTTAGCGAGGattgaatttgacaaatttaggtccccgtAAAAATTTCCA
GATTCGGCAATTCCCCAAATTAAAATCCTTGCTAAAAATGCATTttggtc
attcgccaaaattaaacccacgccaaaattaatccacaatcatattgtat
tgtattgtcTTATTTAATATCCCCTCTTGGAAAGGTTCTACTTTATACCA
AAGAGAGGATAGACGAAATAAAAGCACTCTTTTTACCCCAGGAAATTTCA
GAATAGCTTgaacttttaaaaacttcatCAAAACTTCCCTGGATTGGTCA
TCTGACCGCCTGGAGAAAACCGacacaaaaaaaacacattGGAAAAAAAC
TTTCCGAAGAACCCCTGGAATTCCTCTTGTAAATGTTTCTGTTCAGATAT
AAATCTGAATGGCCCATTCTGTCCAGTCACAATTAATAACGTACACTATT
TCTTATGtgatacaattttcaaacatttttatcTAGGCGTAATAACTTTT
TATTGCAtgacattaaaaaagaaatttaattttcaaggtattaatatttt
taaagtATTCTGAATATTTTGTATTATTTATTGTGGATTATATAAATTAT
GATTTAAAGTAGACAAATTTATAAGGTAAACTAAACTATCTTTTGAATAG
ATTTTATTATACATAGATCAAGATGAGAAAATAGACGCG
Run BLAST on NCBI

transcript from alignment at sc0000331:264645..274074+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00019576 ID=TCONS_00019576|Name=TCONS_00019576|organism=Clytia hemisphaerica|type=transcript|length=9430bp|location=Sequence derived from alignment at sc0000331:264645..274074+ (Clytia hemisphaerica)
AAAAAAAGAAGAGATGCATGATCGGTTGAAGCAAAGGCTGCTCAATTACA
TGTGCATCTTCTTTACATTGATGTGTTTTGGCAAGCTTTATCTGAGAGAT
AACTCAAAGGTCAATGATCACCAACATCTTGTGGGGGACTCATGGAGCCT
CAATGAACACGAAATACAAACCAACCTGGATAAAGAATACAATAGGCTTA
GAAGAAATCATGCTGCTAAGAAGCCAGGTACAGGATCGAACTGGTTCGGA
TAAAAATTATAATGTATTCAGTCCCTTGTCTGGTTATAATTAACATTTCA
TTTACTTTATTTGGAAAGTTTATAACTCATTTTGAGTAAAtacactaaag
tctgtctcaatataatcttcaGAGGAGACAAAAAGGCTacgtaacttttg
atagaattctaATGAAATGGCGGTTTTGcacttgttgaaaagatataaag
agatttcaaaaaaaaataagatgaaaaatgaagaagaggaAAAATCAAGT
TCTTGTAGGATTGTCCTATTATTTTAATATTAAGaaaatcttcaatctta
gagggttatcaatgtgaaaaaatacttcaaaaaatAGTAATAGTCAAAAA
ATAAACCACTGTCTGGTTAACTAAAAAATGGgcttctttttgttgttttt
acttttttaaagcCAATCAGTGATATactatatcttttgattgaattcaT
ATTTTTGAACAATCTTTTCATAGGGATATTCTAAGTAAGATCAAAGAATT
actatattttgaaaatggaaattgCAGATGTTTTCTATTTAGTAATATTT
CACTcttaaatatcttttcaacaaacacaTAAACACTattcaattcaaat
tctatcaaaaattacAGCCTTTTTTTCCCGCTGCTggttatattgagaca
gactttacaaTTGAAATATAGGAATGGGTGTTTATGCAGGCTTGTATAAA
AATGTATACTGCTACTAATTGCTAAGAATTGGGTTTTTTaggagccattt
tttttaaaaatcttcagaataaagaaagtctgatacctcaccctcttaga
ttttgatgaaattttgaccaaatgaccTATCACACATGAaaataagactc
tgaaaatttcaccttgatatctcaagtagttttgaagatacagcgtctca
aagataggctactaagcgaaaattgacccctaaaaatcatgaNNNNNNNN
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attttcttgtgtgatagatcatttggtctaaatttcagcaaaatccaaga
gggtgaggtatcacaccctgaagactcttaaaaaaaatggctcttgtCAA
GAACTCTTGCATCgaattgataaaattttaagaactcttgttgattttct
ttttccagcAGGCAATGTGAATAGCGAGGATGATGAAGATGATGGTGTTG
ATTATGGAGCACACAAATTAGCCATCATTGTTCCATATCGAAATCGATTC
GAAGAATTGAAAGACTTTGTGCCACACatgaaaaaatatctaaaagaGAA
GAAGATTCGAAATCATATTTATATCATCAACCAAGCTGACAACCACAGGT
AGTTGAAAGAAATCTaatcatttgttttatcattttcatatcattttttt
tatgagaccaattctataagaacaattttagacaGAAATtggttaaagta
gtaaaattcggccctaaaaaataaagatatgaTCAGTTACGATTTGAAGG
TAAAAGCGATGAGAGCAATTCAAAGCATATTTTGGTGGACAATAAAATCA
GTCGAGCCTTGGAAAATTTACTATTTTGTTGTTCAGAAATGAGTTAATGA
TTTCACACTCTTCAATTACATAAAGTTAAATCAAGAGAAAAGGTGTCTGT
CTtaaaatactttaggcgtacaaactttcgcaagcagaaattttcgcgag
gccgaaaaattgcgaaaattacaacatttactttcgcgaatttggtgaaa
aaaaaattttcgcgagcataaacttttgtgAATCGTTGggtaaaaatgag
aattttcgaataaaattgtcttaaaagtgaaaaatattccttaaatctgA
TAAAGACAGCTGCTCTTCGACTTTGAAAAGACAATAAAGGATAAGAATAC
tgctgaaaatttgatatttattacgatttttaggttttatagatttccaa
cttttttgagaattttttgcgagcataaacatAGTTCGGACTCCCCCCcc
aaaattcgacaaaaaagccgtaatttttgaaaaaaaaattaattgaataa
aaatttatCGCTTGCTGAAAAGATAATCACGAGTGGGAAAAAAGTGTTCT
TCTTAACTGTATTAACattatgtttttcacacaactGTTAGTACATTTCG
TCTCCCCTTTAGATTCAATCGAAAGATATTACCTAAATACATCactaatt
ttctttaaaaaccatCAAAACGACTAAAAAGACCTCATTCTGTAGTCACC
CAAAAGTTTTGATCTGTCTTAATTTTAAATTAGTGATCATAGCACAATTC
TATATGAAGTAGTTTTCAGCtgaacttttcaactttttttgaatcattta
ttttttataatttcccATTCTCCTAAAATATGTTTTCAACGAGCATCAAA
CACCTATCTAGTTCGAATTCCAACAGACGTTACAACCCTTTATATTTATA
TGcggcaaattatattgagacaaaaGACTGACAATTCTTTATTGAATTGA
TTTTGACACGTACATCTTTGATCTTGATTGAAGGTTTAACCGTGCATCAT
TGATCAACGTCGGCCACACCATCGCGTACAATGATAAATGTGACTATATG
GCAATGCATGATGTCGACCTTTTACCATTGAACAAGCAATTGAATTATGG
GTACCCAGAATTGGGACCCTTTCACGTTGCAGGGCCCAATCTCCATCCAA
AGTACCATTATGAGAAGTTTGTCGGTGGTATTTTAATATTAACCATGACT
CAATTCAACGAGGTTTGTTATTCCTTTTCTATACCAGCATTACAAATGAT
TATGGTTTTGCTTTATTTGTCAGCacacttttttcataagaaccaatTAC
GTTTCGTTCTCTTTAAATGTTAGATTCTACCTCATTTTAGGGAAATTTTC
TCTTAGCCTTACTTACGTTCTTTTAAGATTGATATTATGAAGTGACTgtc
tctttataaaaaaaaactgactAAATGATGTTATGTGACTGTTATCTTTA
GTTGAACGGAATGTCCAACAAGTTTTGGGGTTGGGGTCGTGAAGATGACG
AATTTTACATGCGAATGGTGGATTCCAATTACAAGGTAACAAGATTACTT
ACCACTGTCGGTTGAAATATCTGCTGGGGTATAAATCAAACATTTTATCT
AATAAGTTTAATATCTGAACCTGTCATGCTCTTTCTGGTTATCAGTATTA
AAAGTTCCTTCCaccagacggatttccgtctccgCGAAGtcttttccgtc
tcaaaattctgcaccTGAATTTCCGCGGAGGGGGGGGTAAGgtaaaatcg
gaaaattttaaattagtttgaattataataagggtcggaaaagttatgat
ttttaggaaagtttttaagcttttagtttgaggaaaagaaaatcaaaaaa
atctctaaaaggGTAAGGcgtatattttacaaaaatgtctatgggtcggt
tttcggaggtcagAAAGTTGTTAAACCGTCACCTCCATCCTACAAAActt
ttcttgactttttttttcagattttccgcCATGGTAGTGAGATTACGACA
GGATACAACACATTTAAACACGAGCATTCTGTGGAACGAAAACGAGATTA
CGCCAAATTACCCGGACAAAAGAAGGTACTCGGTTAACAAATTCTCCGAA
ATGTTGTCATCATACTATTTTTCATTCATCCAAAACATACAATAACATAC
ACTACCCccgtggaggtcctttaaattgaCCTTTGTTCGTTCGTGCGTTA
GTcaccagcttttctcaagattggcttattcaaattttctgatttttggc
aagGTGTatcaccctcgaatgtgacggagtcgATTTTCGGGggaaaagat
ttttgtataaatttcagccaaaaacagcgaaaaaacgggtttttttggac
tttatgaaatattggatcattggatcattcTCTATAAGAATGGCTATTAA
TAAAAACggcatcaatgttcttagccaaattactcaattttttgataata
taccggggcgccacaaaaaagtttctctctttgaaaccaaatttcttgaa
atctaaaaattttaaaagaaccattcctatttcattggaaagaagaaaga
tagacttaaattttgatgggtcatttattaaattcgattaattANNNNNN
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tcggttttttcgttcatgtttttgattttgctaaatttcaaccatttttg
aagaactgcacaaaatgcgtgttgactaactgacgtcaaataaaaactgc
tatgctcaattgaataaaaatgttactttcagaaagtgctccaaatcgtt
aaaaatcgacatatcaaatttttactttaaatttggcaatcgcaatagcc
tttacacgattaaaagcatttttcattaactaaacagataaaatttgaaa
cttaagggtcgaaagggtttaaaatcctcatcaaaattaatttaatttag
ttttaccgaaattttcctgaGATTTTTGGTTTAGACtagataaagtctat
gtaaggctggatctacctcgaaacccatatttgatgtatttttatgaatt
ctactagattttttggcctttttcgacaaatttttttcctttcattgaaa
ttcaaccttcttttaaataacaaaaggtcatttagacagctaattatcat
ttttaatgactgaaacgaaaatactgatataaaagaaccattcctatttt
attggaaagaagaaagataaacttgaTGGGTCTTTTATTGAATtagattc
attagatcaaaagttatgctcaattgaataaaaaagttactttcagaaag
tgctcaaaaacgttaaaaatcgacctatcaaattattcattgaaattcaa
ccttcttttaaataacaaaaggtcatttagacagctaattatcattttta
atgactgaaacgaaaatactgatatatcTAATTCAATAAAAGACCCAtca
agtttatctttcttctttccaataaaataggaatggttcttttaaaatat
ttagatttcgagaaaattacttttaaagagagaaacttttttgtggcgca
cccggtagatgttttttttgctcaagtcttgaatatgaaaaaatatttgt
gtctgagcatgaaattttggtttctaaaacgTATTTTCTGTGAGAAACAA
ACGACGAATTTTAATATCGTCACTATCGTGTTCTGAACGATTGTTTAAAG
ACTCCTTTTTGATAATCTTGAAGTCTGGgtaaaaagttacaaattttaTC
TAAATCGCTCTCTGATTTTTGGTTTCGCTTTGATCTAAAAAAAATGCTTG
GTTAAAAATCTAAGGGGAAGGGAGATTATTTAGATATGTTATTCgaatat
tctttttcatttacaGTCGATGTTCAGTCGTGATCACGACACCGGTTTAT
CGACCTTAGTGTACAACCAGAAGAAGCGAAGTGAGTTCACTATCGATGGA
TACCCATGCACGGTCATCGATGTAGAATTGGAATGTGACAAAAATCTCAC
TCCCTGGTGCGATGTGCCACCTGCcaagaaaaaacgattttaggtataaa
tttttaacaaacgCTTAGAGTTTTATCCAATTTTAGTGCTAGAATTTTTA
CATTTTNTTTTTAACAAACGCTTAGAGTTTTATCCAATTTTAGTGCTAGG
ATTTTTACATTTATAGTCTTGACTTTACTTTAACCTGCTTATTCTATCAA
CTGGATACTTTAAGTGGATTGCCGAATGACTAAAATGCGTTTTTTAGCGA
GGattgaatttgacaaatttaggtccccgtAAAAATTTCCAGATTCGGCA
ATTCCCCAAATTAAAATCCTTGCTAAAAATGCATTttggtcattcgccaa
aattaaacccacgccaaaattaatccacaatcatattgtattgtattgtc
TTATTTAATATCCCCTCTTGGAAAGGTTCTACTTTATACCAAAGAGAGGA
TAGACGAAATAAAAGCACTCTTTTTACCCCAGGAAATTTCAGAATAGCTT
gaacttttaaaaacttcatCAAAACTTCCCTGGATTGGTCATCTGACCGC
CTGGAGAAAACCGacacaaaaaaaacacattGGAAAAAAACTTTCCGAAG
AACCCCTGGAATTCCTCTTGTAAATGTTTCTGTTCAGATATAAATCTGAA
TGGCCCATTCTGTCCAGTCACAATTAATAACGTACACTATTTCTTATGtg
atacaattttcaaacatttttatcTAGGCGTAATAACTTTTTATTGCAtg
acattaaaaaagaaatttaattttcaaggtattaatatttttaaagtATT
CTGAATATTTTGTATTATTTATTGTGGATTATATAAATTATGATTTAAAG
TAGACAAATTTATAAGGTAAACTAAACTATCTTTTGAATAGATTTTATTA
TACATAGATCAAGATGAGAAAATAGACGCG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_011005XLOC_011005Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00019576-exon-sc0000331-1491911889:264645..264871TCONS_00019576-exon-sc0000331-1491911889:264645..264871Clytia hemisphaericaexon
TCONS_00019576-exon-sc0000331-1510915933:264645..264871TCONS_00019576-exon-sc0000331-1510915933:264645..264871Clytia hemisphaericaexon
TCONS_00019576-exon-sc0000331-1575043694:264645..264871TCONS_00019576-exon-sc0000331-1575043694:264645..264871Clytia hemisphaericaexon
TCONS_00019576-exon-sc0000331-1491911889:268206..268392TCONS_00019576-exon-sc0000331-1491911889:268206..268392Clytia hemisphaericaexon
TCONS_00019576-exon-sc0000331-1510915933:268206..268392TCONS_00019576-exon-sc0000331-1510915933:268206..268392Clytia hemisphaericaexon
TCONS_00019576-exon-sc0000331-1575043694:268206..268392TCONS_00019576-exon-sc0000331-1575043694:268206..268392Clytia hemisphaericaexon
TCONS_00019576-exon-sc0000331-1491911889:269578..269806TCONS_00019576-exon-sc0000331-1491911889:269578..269806Clytia hemisphaericaexon
TCONS_00019576-exon-sc0000331-1510915933:269578..269806TCONS_00019576-exon-sc0000331-1510915933:269578..269806Clytia hemisphaericaexon
TCONS_00019576-exon-sc0000331-1575043694:269578..269806TCONS_00019576-exon-sc0000331-1575043694:269578..269806Clytia hemisphaericaexon
TCONS_00019576-exon-sc0000331-1491911889:270046..270129TCONS_00019576-exon-sc0000331-1491911889:270046..270129Clytia hemisphaericaexon
TCONS_00019576-exon-sc0000331-1510915933:270046..270129TCONS_00019576-exon-sc0000331-1510915933:270046..270129Clytia hemisphaericaexon
TCONS_00019576-exon-sc0000331-1575043694:270046..270129TCONS_00019576-exon-sc0000331-1575043694:270046..270129Clytia hemisphaericaexon
TCONS_00019576-exon-sc0000331-1491911889:270565..270669TCONS_00019576-exon-sc0000331-1491911889:270565..270669Clytia hemisphaericaexon
TCONS_00019576-exon-sc0000331-1510915933:270565..270669TCONS_00019576-exon-sc0000331-1510915933:270565..270669Clytia hemisphaericaexon
TCONS_00019576-exon-sc0000331-1575043694:270565..270669TCONS_00019576-exon-sc0000331-1575043694:270565..270669Clytia hemisphaericaexon
TCONS_00019576-exon-sc0000331-1491911889:273011..273245TCONS_00019576-exon-sc0000331-1491911889:273011..273245Clytia hemisphaericaexon
TCONS_00019576-exon-sc0000331-1510915933:273011..273245TCONS_00019576-exon-sc0000331-1510915933:273011..273245Clytia hemisphaericaexon
TCONS_00019576-exon-sc0000331-1575043694:273011..273245TCONS_00019576-exon-sc0000331-1575043694:273011..273245Clytia hemisphaericaexon
TCONS_00019576-exon-sc0000331-1491911889:273303..274074TCONS_00019576-exon-sc0000331-1491911889:273303..274074Clytia hemisphaericaexon
TCONS_00019576-exon-sc0000331-1510915933:273303..274074TCONS_00019576-exon-sc0000331-1510915933:273303..274074Clytia hemisphaericaexon
TCONS_00019576-exon-sc0000331-1575043694:273303..274074TCONS_00019576-exon-sc0000331-1575043694:273303..274074Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000331supercontigsc0000331:264645..274074 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.781725	8.02332e-07	0	0.0213617	9.78325e-08	8.18778e-06	0.0177375	4.3166e-08	0	0	7.30992e-07	2.26479e-08	0	7.73385e-08	0	0	8.15406e-07	2.81099e-06	0.0246595	0	2.73187	1.98384	0.00102369	3.53083e-06	9.09993e-09	0.00326083	0	0.00802756	2.97239	0.00267011
Blast
[Close]
BLAST of TCONS_00019576 vs. Swiss-Prot (Human)
Match: B4GT7 (Beta-1,4-galactosyltransferase 7 OS=Homo sapiens GN=B4GALT7 PE=1 SV=1)

HSP 1 Score: 292.738 bits (748), Expect = 7.685e-93
Identity = 132/239 (55.23%), Postives = 176/239 (73.64%), Query Frame = 2 
Query:  263 VDYGAHKLAIIVPYRNRFEELKDFVPHMKKYLKEKKIRNHIYIINQADNHRFNRASLINVGHTIAYNDKCDYMAMHDVDLLPLNKQLNYGYPELGPFHVAGPNLHPKYHYEKFVGGILILTMTQFNELNGMSNKFWGWGREDDEFYMRMVDSNYKIFRHGSEITTGYNTFKHEH-SVERKRDYAKLPGQKKSMFSRDHDTGLSTLVYNQKKRSEFTIDGYPCTVIDVELECDKNLTPWC 976
              +G H+LA++VP+R RFEEL  FVPHM+++L  KKIR+HIY++NQ D+ RFNRA+LINVG   + N   DY+AMHDVDLLPLN++L+YG+PE GPFHVA P LHP YHY+ +VGGIL+L+   +   NGMSN+FWGWGREDDEFY R+  +  ++FR  S ITTGY TF+H H    RKRD  ++  QK+  F  D + GL+T+ Y+   R+  ++ G PCTV+++ L+CDK  TPWC
Sbjct:   88 ASWGPHRLAVLVPFRERFEELLVFVPHMRRFLSRKKIRHHIYVLNQVDHFRFNRAALINVGFLESSNST-DYIAMHDVDLLPLNEELDYGFPEAGPFHVASPELHPLYHYKTYVGGILLLSKQHYRLCNGMSNRFWGWGREDDEFYRRIKGAGLQLFRP-SGITTGYKTFRHLHDPAWRKRDQKRIAAQKQEQFKVDREGGLNTVKYHVASRTALSVGGAPCTVLNIMLDCDKTATPWC 324
The following BLAST results are available for this feature:
BLAST of TCONS_00019576 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
B4GT77.685e-9355.23Beta-1,4-galactosyltransferase 7 OS=Homo sapiens G... [more]
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