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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00019552 ID=TCONS_00019552|Name=TCONS_00019552|organism=Clytia hemisphaerica|type=transcript|length=4103bpRun BLAST on NCBI protein sequence of TCONS_00019552-protein >TCONS_00019552-protein ID=TCONS_00019552-protein|Name=TCONS_00019552-protein|organism=Clytia hemisphaerica|type=polypeptide|length=1052bp MLFISCFAGILLLASKVHTVYNQEADATFEAVIDDVVEESAPKTRTLESFRun BLAST on NCBI transcript from alignment at sc0000331:53457..67597+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00019552 ID=TCONS_00019552|Name=TCONS_00019552|organism=Clytia hemisphaerica|type=transcript|length=14141bp|location=Sequence derived from alignment at sc0000331:53457..67597+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000331:53457..67597+ >TCONS_00019552 ID=TCONS_00019552|Name=TCONS_00019552|organism=Clytia hemisphaerica|type=CDS|length=53703bp|location=Sequence derived from alignment at sc0000331:53457..67597+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00019552 vs. Swiss-Prot (Human)
Match: E2AK3 (Eukaryotic translation initiation factor 2-alpha kinase 3 OS=Homo sapiens GN=EIF2AK3 PE=1 SV=3) HSP 1 Score: 262.307 bits (669), Expect = 1.035e-71 Identity = 198/646 (30.65%), Postives = 321/646 (49.69%), Query Frame = 2
Query: 383 RSLIFVSTTDGSFTCLNALS-GQLLWSVPAEXXXXXXXXXXXXXXXELADVKFIPSLNGNLYKWNGER--LETVPLSADYLLGNIKRLPDGSYIVGGQEVSISGIDVNTGELSYDCTLKGCKPVKKYSNIIKHKDIISLRRTQKTIRVFEPQSGQEKWNYSVGNFDIELV---EGESGDVLDSY-CGEDGESTN------DQYSFVMQDGVVASE---------------EWTFHFTSPIASAWKLEDKQLKPLNVF-------NSDQLQLGENI------NTQSLVYLGLYKGQMYVQHP---NEKEKKDSKS--NLFSEKLSLDVPQIGHWRPLVATSPSRTPFI---------------NYDRGDSTALSSIDYPFDNGIFLYSNTTAVSLPSNNKENKEGYCSSENPDVCNADNQSETGEESVFSEYVDLAPVTIRDWWKEIAVLSVLIAIGINVAARFLKKKLAVISPQLAPLXXXXXXXXXXXXXPQPITNTSASTSSKHVKNK-SSISKACDPIPEINTEEITSENAXXXXXXXXXXXXDFTSRYLVDFDHLECLGKGGFGVVFKARKKIDEFEYAIKRIYLPQCEEAKSRMMREVRALAALEHPGIVRYFHAWWEAPPQGWQFELDRTVLMKDVEDPP 2134
RSL+ +ST DG L+ + G+ W + + S SS+ + + IPSL+G L++W+ +R +ETVP + + LL + + D +VGG+ ++ G+ +G++ Y C+ GC+ + + +DI+ L+RTQKT+R P+SG EKWN+SVG+F++ + E +G + ++ E+ E + +Q + +M + S EW + F +PIASAW L+D ++ P+++F N D L+ E+I T++ VYLG+Y+GQ+Y+Q +EK K+ ++ +E + +P I W+PL+ SPSRTP + +++ + ALS + YP+DNG +L N + + +NP + + PV + WWKEI V ++L I +A F+ ++L P P S + +NK S+S + + + +I + + SRYL DF+ ++CLG+GGFGVVF+A+ K+D+ YAIKRI LP E A+ ++MREV+ALA LEHPGIVRYF+AW EAPP+ WQ ++D L + D P
Sbjct: 103 RSLVIISTLDGRIAALDPENHGKKQWDL--DVGSGSLVSSSLSKPEVFGNKMIIPSLDGALFQWDQDRESMETVPFTVESLLESSYKFGDDVVLVGGKSLTTYGLSAYSGKVRYICSALGCRQWDS-DEMEQEEDILLLQRTQKTVRAVGPRSGNEKWNFSVGHFELRYIPDMETRAGFIESTFKPNENTEESKIISDVEEQEAAIMDIVIKVSVADWKVMAFSKKGGHLEWEYQFCTPIASAWLLKDGKVIPISLFDDTSYTSNDDVLEDEEDIVEAARGATENSVYLGMYRGQLYLQSSVRISEKFPSSPKALESVTNENAIIPLPTI-KWKPLIH-SPSRTPVLVGSDEFDKCLSNDKFSHEEYSNGALSILQYPYDNGYYL----PYYKRERNKRSTQITVRFLDNPHYNKNIRKKD--------------PVLLLHWWKEI-VATILFCI---IATTFIVRRL---------------------FHPHPHRQRKESETQCQTENKYDSVSGEAN---DSSWNDIKNSG--------------YISRYLTDFEPIQCLGRGGFGVVFEAKNKVDDCNYAIKRIRLPNRELAREKVMREVKALAKLEHPGIVRYFNAWLEAPPEKWQEKMDEIWLKDESTDWP 683 HSP 2 Score: 187.963 bits (476), Expect = 4.073e-48 Identity = 99/201 (49.25%), Postives = 132/201 (65.67%), Query Frame = 2
Query: 2687 PPLFLYIQMQLCKQETLKDWLVKRSPDICFKRS--LEIFQQIRDAVEYFHRQGMMHRDLKPANIFFSLDGSVKVGDFGLVTAITRPSRGKSKRHGFVQDENHTGQVGTQLYMSPEQASGKPYSQKVDLYALGLILFELLNYFSTQMERIRLIYGLKRGDLPEAL-QNTP-QGDLVTLLTNEDPSQRPEAIELKSHHLIEDF 3277
P ++LYIQMQLC++E LKDW+ R +RS L IF QI +AVE+ H +G+MHRDLKP+NIFF++D VKVGDFGLVTA+ + ++ HTGQVGT+LYMSPEQ G YS KVD+++LGLILFELL FSTQMER+R + ++ P Q P + +V + + P +RPEAI + + + ED
Sbjct: 880 PKVYLYIQMQLCRKENLKDWMNGRCTIEERERSVCLHIFLQIAEAVEFLHSKGLMHRDLKPSNIFFTMDDVVKVGDFGLVTAMDQDEEEQTVLTPMPAYARHTGQVGTKLYMSPEQIHGNSYSHKVDIFSLGLILFELLYPFSTQMERVRTLTDVRNLKFPPLFTQKYPCEYVMVQDMLSPSPMERPEAINIIENAVFEDL 1080 The following BLAST results are available for this feature:
BLAST of TCONS_00019552 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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