TCONS_00019540 (transcript) - C. hemisphaerica

Overview
NameTCONS_00019540
Unique NameTCONS_00019540
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1043

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00019540 ID=TCONS_00019540|Name=TCONS_00019540|organism=Clytia hemisphaerica|type=transcript|length=1043bp
CTGATGCTGAgcaaatgaaattatttttccacACAATCTGTTGTAATTAT
GTTTCATCCAGATTATTTATTATTGTTataatttattcaatttttaatat
tttgatttttcaggtAAATGTCTAACAGACACAACTGATTATCCAAACAC
AACAGATTCTGGTTCAAACTCAGATTCTCAAATTTGGTTCCAAACTGTTC
CATTGTCATCAAGTTCtccaaaaaagacaaaaagaagagTTGCGAAATAT
CATACAGGCAGTACTGGTGATTCAACAAATTCTGGCTCTGATACAGATTC
TGAGCTGTTGTTCTCAGCTGTCCAACAATTACCAGCTCCTTCATTGAATC
CAAGACCAGTTCCTTCATTGAATCCACGACCAGTCATAAAGAAATATCAC
GTTAGAAGAATCTCAAAACATGCAGCTATACAAACAAGAAAAGCACGAAG
CCCAAGAAAAAAGCCTAACAGAGAACAACATTACAAATTGGCGGAGAAAT
TTAAGAGATTGAGTCCATATGTCTTTTTATCCATATTCatatttttaatg
ctttttcaTCGATTGGGCTTTTGTGAATAAATTAAGTTTACAAGATTGTA
CCTTTAAAAACTCTGTTTTATTTACTATGTATCAATTGCCATCACTACGT
AacgtcaaattttccaaatcgctttttgatttcaaatgcaAATGGACAGT
ACACACCTCCAACTGAGAAAAAATAACAATCTCGTGTTATTTGGGTGGAT
TAAAAAATAGAGTGGCGTGGTTTGTGGTGCTACCTACCGGTACAGGACCA
AAAAATCAAGTTATCTTATATGATGCCAGTGGTACTTAATGGGTTCAGTT
AATAATGTTTATTGATCGATATTTGATATCTGCTTTTATATGCCATTAAT
TAATAAATTGTATAGATTgatagaactttttaaaaatttgattacgtATA
AGTAATTTTAGGTATGTAGTAATTATTTTATCAGtgtaatttatttaatt
tttattatgCATAATAGAACACTTTTTAGCTCATATAAAAGAC
Run BLAST on NCBI

transcript from alignment at sc0000329:334495..335758-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00019540 ID=TCONS_00019540|Name=TCONS_00019540|organism=Clytia hemisphaerica|type=transcript|length=1264bp|location=Sequence derived from alignment at sc0000329:334495..335758- (Clytia hemisphaerica)
CTGATGCTGAGCAAATGAAATTATTTTTCCACACAATCTGTTGTAATTAT
GTTTCATCCAGATTATTTATTATTGTTATAATTTATTCAATTTTTAATAT
TTTGATTTTTCAGGTAAATGTCTAACAGACACAACTGATTATCCAAACAC
AACAGATTCTGGTTCAAACTCAGATTCTCAAATTTGGTTCCAAACTGTTC
CATTGTCATCAAGTTCTCCAAAAAAGACAAAAAGAAGAGTTGGTACGTTG
AGCGGAATACCACAGATATCATGATTAGCTGCTAGTTATTGCTTTACGAA
CCAGCTGTTTTAAGAGTTGGGCAAGGTCCACTAGTTTTTTTTTCTTTTTT
GGATATGTTTTTTAAAGTACAACGAACTGAGTGAAATCTCAAAATATTTT
GGTCTGAAAATCCTTAACAGCGGATCAATTTGTTTCATTTTCATTTTTTT
CTCCATTTTTTAGCGAAATATCATACAGGCAGTACTGGTGATTCAACAAA
TTCTGGCTCTGATACAGATTCTGAGCTGTTGTTCTCAGCTGTCCAACAAT
TACCAGCTCCTTCATTGAATCCAAGACCAGTTCCTTCATTGAATCCACGA
CCAGTCATAAAGAAATATCACGTTAGAAGAATCTCAAAACATGCAGCTAT
ACAAACAAGAAAAGCACGAAGCCCAAGAAAAAAGCCTAACAGAGAACAAC
ATTACAAATTGGCGGAGAAATTTAAGAGATTGAGTCCATATGTCTTTTTA
TCCATATTCATATTTTTAATGCTTTTTCATCGATTGGGCTTTTGTGAATA
AATTAAGTTTACAAGATTGTACCTTTAAAAACTCTGTTTTATTTACTATG
TATCAATTGCCATCACTACGTAACGTCAAATTTTCCAAATCGCTTTTTGA
TTTCAAATGCAAATGGACAGTACACACCTCCAACTGAGAAAAAATAACAA
TCTCGTGTTATTTGGGTGGATTAAAAAATAGAGTGGCGTGGTTTGTGGTG
CTACCTACCGGTACAGGACCAAAAAATCAAGTTATCTTATATGATGCCAG
TGGTACTTAATGGGTTCAGTTAATAATGTTTATTGATCGATATTTGATAT
CTGCTTTTATATGCCATTAATTAATAAATTGTATAGATTGATAGAACTTT
TTAAAAATTTGATTACGTATAAGTAATTTTAGGTATGTAGTAATTATTTT
ATCAGTGTAATTTATTTAATTTTTATTATGCATAATAGAACACTTTTTAG
CTCATATAAAAGAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_010982XLOC_010982Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00019540-exon-sc0000329-1575043694:335517..335758TCONS_00019540-exon-sc0000329-1575043694:335517..335758Clytia hemisphaericaexon
TCONS_00019540-exon-sc0000329-1575043694:334495..335295TCONS_00019540-exon-sc0000329-1575043694:334495..335295Clytia hemisphaericaexon
TCONS_00019540-exon-sc0000329-1510915933:335517..335758TCONS_00019540-exon-sc0000329-1510915933:335517..335758Clytia hemisphaericaexon
TCONS_00019540-exon-sc0000329-1510915933:334495..335295TCONS_00019540-exon-sc0000329-1510915933:334495..335295Clytia hemisphaericaexon
TCONS_00019540-exon-sc0000329-1491911889:335517..335758TCONS_00019540-exon-sc0000329-1491911889:335517..335758Clytia hemisphaericaexon
TCONS_00019540-exon-sc0000329-1491911889:334495..335295TCONS_00019540-exon-sc0000329-1491911889:334495..335295Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000329supercontigsc0000329:334495..335758 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.298245	0.11543	0.141366	2.19794	1.59172	1.99966	2.40209	1.38994	1.3097	2.6319	2.12744	1.79081	1.50502	0.667099	1.13187	0.927644	1.13512	0.80453	1.63981	0.689981	0.86541	0.1302	0.663387	1.90694	1.69523	0.777406	1.1599	0.791711	0.231222
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00019540 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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