TCONS_00019535 (transcript) - C. hemisphaerica

Overview
NameTCONS_00019535
Unique NameTCONS_00019535
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1643

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00019535 ID=TCONS_00019535|Name=TCONS_00019535|organism=Clytia hemisphaerica|type=transcript|length=1643bp
ATCTTCAACCCAGTCATTCAGCTCTTTATGCTCCGACAAACATAACGGAA
TCCAACACAGCGCACTTAACATCAATGACGTCATGACCTGGATCTCATTC
ATCCTTCCTGATTGCAAGGATAACTCAGACACTGTAATTGTTGTAATACC
TGGCAATCCAGGAGCAATCGAATTTTATGATcgatttattgaaaatttgt
ttcaatATTGCAAACTACCAATATTTGGAATCTCACATGCAGGTCACAAT
CTTATTCCATCAAAAAGCTCATTAGTACGTCGTGTGTATAAGGAATTAAA
CCCGAACATCAAATCAAGCGATAAACATGTGTTTACACTAGAAGAACAAA
TCGAACACAAATTAGCTTTCATTCGTCAACATATTGACCCCAACAAGAAG
ATAATTCTCATTGCTCACTCATTGGGTTCTTATATAACGTTGAAAATGTT
AGAAAGATTAGACTGTGAAGAGGCTGATAGGGTAAAACAAATTATTCTAT
TGTTCCCAGTCTTCGAGCGTACGATGGAGACCCAAAGTGGCCGCAAGTGG
GTGCCACTAACGCAATTCTTGCAAAGGCCTGTTATTCGAACCACAAAACT
GGTTGAACTTCTTCCACAAACtgttaaaaaatcaataatCGATTTCATTG
CACATCAAAGACGGTTTTCGAACGATTCGAAGAAATCATTATCGAATGGA
ATCGATTCGTTGGTCACTCCGAATGGTTTGCGAAACATGTCACAAATCGC
GAAAGATTTATCGAAAATCGGACGAATCGGTGATCTTGAAAACGTCATCG
AGACATTTAGTGAACGTCTGACTTTTTATTATGGAGCAAGTGACCTTTGG
ACTCCACTTTCGTTTTATGAAGAGATGAAAacccgatttcccgatattgA
TATACGATTGGACGGTAAGGGAATTGACCATGCTTTTGTGTTGAGCCATA
GCACACTGGTGGCACCTATAGTCAGGGAAATCTTACAAGAAAAAATTATG
ATGGATCAGATAGCCGAATCGGGTTCAATTGATTCTTATCGGGATTACTT
TTTCCATTTCGGATTCAAACGATCTCAAATGTATAAATCAAGAGCAAGTA
TAAGAAGAATTTCGAATCAATCTGGATAATCTTGGATTCTAAAAATACTG
TATTTCTGTTTTATGGAAATGTTTTATTAGAATATTATGACAAAAATGCT
ATTTAAAGGCATTTGCTAATTCGGGCCTACGTGCTTTACACACTtgctag
actagtaaaccacgtcgttgtatttcgctgcagcttAAGCTTGCAATGGG
CTCTATgtctatatgttcactgaatacaaatgtctttccaaaccactctc
ccgcggcaatttctattttttataagaactctttataagGACTATTCctg
cgttcctgtgtccaaggaaagacagacgcttgctagtctacaccttgcca
aattttccagacgtttcaaaattttcaagatcAGACGAAATAAAAGTATA
TAGTTTCCCTAATATTTAGAATTTGATCATTTTATTGCAGTCTTTTCAAG
CGATGGTTGTGGTCTGTATAGCACCTTCTGATAAAGCATAATACATATCA
TGATATTTTTGACGTAAAATGATTTATTATCCCTGTTACTACG
Run BLAST on NCBI

protein sequence of TCONS_00019535-protein

>TCONS_00019535-protein ID=TCONS_00019535-protein|Name=TCONS_00019535-protein|organism=Clytia hemisphaerica|type=polypeptide|length=375bp
SSTQSFSSLCSDKHNGIQHSALNINDVMTWISFILPDCKDNSDTVIVVIP
GNPGAIEFYDRFIENLFQYCKLPIFGISHAGHNLIPSKSSLVRRVYKELN
PNIKSSDKHVFTLEEQIEHKLAFIRQHIDPNKKIILIAHSLGSYITLKML
ERLDCEEADRVKQIILLFPVFERTMETQSGRKWVPLTQFLQRPVIRTTKL
VELLPQTVKKSIIDFIAHQRRFSNDSKKSLSNGIDSLVTPNGLRNMSQIA
KDLSKIGRIGDLENVIETFSERLTFYYGASDLWTPLSFYEEMKTRFPDID
IRLDGKGIDHAFVLSHSTLVAPIVREILQEKIMMDQIAESGSIDSYRDYF
FHFGFKRSQMYKSRASIRRISNQSG
Run BLAST on NCBI

transcript from alignment at sc0000329:257383..259233-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00019535 ID=TCONS_00019535|Name=TCONS_00019535|organism=Clytia hemisphaerica|type=transcript|length=1851bp|location=Sequence derived from alignment at sc0000329:257383..259233- (Clytia hemisphaerica)
ATCTTCAACCCAGTCATTCAGCTCTTTATGCTCCGACAAACATAACGGAA
TCCAACACAGCGCACTTAACATCAATGACGTCATGACCTGGATCTCATTC
ATCCTTCCTGATTGCAAGGATAACTCAGACACTGTAATTGTTGTAATACC
TGGCAATCCAGGAGCAATCGAATTTTATGATCGATTTATTGAAAATTTGT
TTCAATATTGCAAACTACCAATATTTGGAATCTCACATGCAGGTATGATC
AGATTCTTAGCTTGTCAATTATTATTATCGGTCGGTTAATTCTAGGTGTA
ACAATATAATTCTCAAGGCTTGACAAGTGGTATCTTTAGGAAAGCCAAAC
TAATTATTAGCTTCTCTAAAACTAAATTTTCATGTTCTATAACAATATTT
TACTACAAGTTTAAAATTTTCCTTTGTCAAGTTTGAAACTTTCGTTTTAG
GTCACAATCTTATTCCATCAAAAAGCTCATTAGTACGTCGTGTGTATAAG
GAATTAAACCCGAACATCAAATCAAGCGATAAACATGTGTTTACACTAGA
AGAACAAATCGAACACAAATTAGCTTTCATTCGTCAACATATTGACCCCA
ACAAGAAGATAATTCTCATTGCTCACTCATTGGGTTCTTATATAACGTTG
AAAATGTTAGAAAGATTAGACTGTGAAGAGGCTGATAGGGTAAAACAAAT
TATTCTATTGTTCCCAGTCTTCGAGCGTACGATGGAGACCCAAAGTGGCC
GCAAGTGGGTGCCACTAACGCAATTCTTGCAAAGGCCTGTTATTCGAACC
ACAAAACTGGTTGAACTTCTTCCACAAACTGTTAAAAAATCAATAATCGA
TTTCATTGCACATCAAAGACGGTTTTCGAACGATTCGAAGAAATCATTAT
CGAATGGAATCGATTCGTTGGTCACTCCGAATGGTTTGCGAAACATGTCA
CAAATCGCGAAAGATTTATCGAAAATCGGACGAATCGGTGATCTTGAAAA
CGTCATCGAGACATTTAGTGAACGTCTGACTTTTTATTATGGAGCAAGTG
ACCTTTGGACTCCACTTTCGTTTTATGAAGAGATGAAAACCCGATTTCCC
GATATTGATATACGATTGGACGGTAAGGGAATTGACCATGCTTTTGTGTT
GAGCCATAGCACACTGGTGGCACCTATAGTCAGGGAAATCTTACAAGAAA
AAATTATGATGGATCAGATAGCCGAATCGGGTTCAATTGATTCTTATCGG
GATTACTTTTTCCATTTCGGATTCAAACGATCTCAAATGTATAAATCAAG
AGCAAGTATAAGAAGAATTTCGAATCAATCTGGATAATCTTGGATTCTAA
AAATACTGTATTTCTGTTTTATGGAAATGTTTTATTAGAATATTATGACA
AAAATGCTATTTAAAGGCATTTGCTAATTCGGGCCTACGTGCTTTACACA
CTTGCTAGACTAGTAAACCACGTCGTTGTATTTCGCTGCAGCTTAAGCTT
GCAATGGGCTCTATGTCTATATGTTCACTGAATACAAATGTCTTTCCAAA
CCACTCTCCCGCGGCAATTTCTATTTTTTATAAGAACTCTTTATAAGGAC
TATTCCTGCGTTCCTGTGTCCAAGGAAAGACAGACGCTTGCTAGTCTACA
CCTTGCCAAATTTTCCAGACGTTTCAAAATTTTCAAGATCAGACGAAATA
AAAGTATATAGTTTCCCTAATATTTAGAATTTGATCATTTTATTGCAGTC
TTTTCAAGCGATGGTTGTGGTCTGTATAGCACCTTCTGATAAAGCATAAT
ACATATCATGATATTTTTGACGTAAAATGATTTATTATCCCTGTTACTAC
G

Coding sequence (CDS) from alignment at sc0000329:257383..259233-

>TCONS_00019535 ID=TCONS_00019535|Name=TCONS_00019535|organism=Clytia hemisphaerica|type=CDS|length=2256bp|location=Sequence derived from alignment at sc0000329:257383..259233- (Clytia hemisphaerica)
GTCACAATCTTATTCCATCAAAAAGCTCATTAGTACGTCGTGTGTATAAG
GAATTAAACCCGAACATCAAATCAAGCGATAAACATGTGTTTACACTAGA
AGAACAAATCGAACACAAATTAGCTTTCATTCGTCAACATATTGACCCCA
ACAAGAAGATAATTCTCATTGCTCACTCATTGGGTTCTTATATAACGTTG
AAAATGTTAGAAAGATTAGACTGTGAAGAGGCTGATAGGGTAAAACAAAT
TATTCTATTGTTCCCAGTCTTCGAGCGTACGATGGAGACCCAAAGTGGCC
GCAAGTGGGTGCCACTAACGCAATTCTTGCAAAGGCCTGTTATTCGAACC
ACAAAACTGGTTGAACTTCTTCCACAAACTGTTAAAAAATCAATAATCGA
TTTCATTGCACATCAAAGACGGTTTTCGAACGATTCGAAGAAATCATTAT
CGAATGGAATCGATTCGTTGGTCACTCCGAATGGTTTGCGAAACATGTCA
CAAATCGCGAAAGATTTATCGAAAATCGGACGAATCGGTGATCTTGAAAA
CGTCATCGAGACATTTAGTGAACGTCTGACTTTTTATTATGGAGCAAGTG
ACCTTTGGACTCCACTTTCGTTTTATGAAGAGATGAAAACCCGATTTCCC
GATATTGATATACGATTGGACGGTAAGGGAATTGACCATGCTTTTGTGTT
GAGCCATAGCACACTGGTGGCACCTATAGTCAGGGAAATCTTACAAGAAA
AAATTATGATGGATCAGATAGCCGAATCGGGTTCAATTGATTCTTATCGG
GATTACTTTTTCCATTTCGGATTCAAACGATCTCAAATGTATAAATCAAG
AGCAAGTATAAGAAGAATTTCGAATCAATCTGGATAATCTTCAACCCAGT
CATTCAGCTCTTTATGCTCCGACAAACATAACGGAATCCAACACAGCGCA
CTTAACATCAATGACGTCATGACCTGGATCTCATTCATCCTTCCTGATTG
CAAGGATAACTCAGACACTGTAATTGTTGTAATACCTGGCAATCCAGGAG
CAATCGAATTTTATGATCGATTTATTGAAAATTTGTTTCAATATTGCAAA
CTACCAATATTTGGAATCTCACATGCAGGTCACAATCTTATTCCATCAAA
AAGCTCATTAGTACGTCGTGTGTATAAGGAATTAAACCCGAACATCAAAT
CAAGCGATAAACATGTGTTTACACTAGAAGAACAAATCGAACACAAATTA
GCTTTCATTCGTCAACATATTGACCCCAACAAGAAGATAATTCTCATTGC
TCACTCATTGGGTTCTTATATAACGTTGAAAATGTTAGAAAGATTAGACT
GTGAAGAGGCTGATAGGGTAAAACAAATTATTCTATTGTTCCCAGTCTTC
GAGCGTACGATGGAGACCCAAAGTGGCCGCAAGTGGGTGCCACTAACGCA
ATTCTTGCAAAGGCCTGTTATTCGAACCACAAAACTGGTTGAACTTCTTC
CACAAACTGTTAAAAAATCAATAATCGATTTCATTGCACATCAAAGACGG
TTTTCGAACGATTCGAAGAAATCATTATCGAATGGAATCGATTCGTTGGT
CACTCCGAATGGTTTGCGAAACATGTCACAAATCGCGAAAGATTTATCGA
AAATCGGACGAATCGGTGATCTTGAAAACGTCATCGAGACATTTAGTGAA
CGTCTGACTTTTTATTATGGAGCAAGTGACCTTTGGACTCCACTTTCGTT
TTATGAAGAGATGAAAACCCGATTTCCCGATATTGATATACGATTGGACG
GTAAGGGAATTGACCATGCTTTTGTGTTGAGCCATAGCACACTGGTGGCA
CCTATAGTCAGGGAAATCTTACAAGAAAAAATTATGATGGATCAGATAGC
CGAATCGGGTTCAATTGATTCTTATCGGGATTACTTTTTCCATTTCGGAT
TCAAACGATCTCAAATGTATAAATCAAGAGCAAGTATAAGAAGAATTTCG
AATCAATCTGGATAATCTTCAACCCAGTCATTCAGCTCTTTATGCTCCGA
CAAACATAACGGAATCCAACACAGCGCACTTAACATCAATGACGTCATGA
CCTGGATCTCATTCATCCTTCCTGATTGCAAGGATAACTCAGACACTGTA
ATTGTTGTAATACCTGGCAATCCAGGAGCAATCGAATTTTATGATCGATT
TATTGAAAATTTGTTTCAATATTGCAAACTACCAATATTTGGAATCTCAC
ATGCAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_010977XLOC_010977Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00019535-proteinTCONS_00019535-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00019535-exon-sc0000329-1575043694:258992..259233TCONS_00019535-exon-sc0000329-1575043694:258992..259233Clytia hemisphaericaexon
TCONS_00019535-exon-sc0000329-1575043694:257383..258783TCONS_00019535-exon-sc0000329-1575043694:257383..258783Clytia hemisphaericaexon
TCONS_00019535-exon-sc0000329-1510915933:258992..259233TCONS_00019535-exon-sc0000329-1510915933:258992..259233Clytia hemisphaericaexon
TCONS_00019535-exon-sc0000329-1510915933:257383..258783TCONS_00019535-exon-sc0000329-1510915933:257383..258783Clytia hemisphaericaexon
TCONS_00019535-exon-sc0000329-1491911889:258992..259233TCONS_00019535-exon-sc0000329-1491911889:258992..259233Clytia hemisphaericaexon
TCONS_00019535-exon-sc0000329-1491911889:257383..258783TCONS_00019535-exon-sc0000329-1491911889:257383..258783Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000329supercontigsc0000329:257383..259233 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	0.30991	0	0	0	0	0	1.42733	1.6563	5.87328	4.19956	0	0.886776	0.465372	0	0	0	0	0	0	0	0.0410679	0	0	0
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR029058AB_hydrolase
IPR019363LDAH
Blast
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BLAST of TCONS_00019535 vs. Swiss-Prot (Human)
Match: LDAH (Lipid droplet-associated hydrolase OS=Homo sapiens GN=LDAH PE=1 SV=1)

HSP 1 Score: 143.665 bits (361), Expect = 3.904e-38
Identity = 98/293 (33.45%), Postives = 155/293 (52.90%), Query Frame = 2 
Query:  134 VIVVIPGNPGAIEFYDRFIENLFQYC--KLPIFGISHAGHNLIPSKSSLVRRVYKELNPNIKSSDKHVFTLEEQIEHKLAFIRQHIDPNKKIILIAHSLGSYITLKMLERLDCEEADRVKQIILLFPVFERTMETQSGRKWVPLTQFLQRPVIRTTK--LVELLPQTVKKSIIDFIAHQRRFSNDSKKSLSNGIDSLVTPNGLRNMSQI-AKDLSKIGRIGDLENVIETFSERLTFYYGASDLWTPLSFYEEMKTRFPDIDIRLDGKGIDHAFVLSHSTLVAPIVREILQEKI 997
            +I +IPGNPG   FY  F + L+     + P++ ISHAGH L P    ++          IK     ++ L  QIEHKLAF+R H+  + K++LI HS+GSY TL+ML+R+       V +  LLFP  ER  E+ +GR   PL  +  R V+  T   L++  P+T+K  +I          N+          +++ P  L N + +  +++ ++ +  D E + E    +LTFYYG  D W P  +YE++K  FP+ DIRL  K I HAF+   +  +A ++ + L++ +
Sbjct:   46 LIFIIPGNPGFSAFYVPFAKALYSLTNRRFPVWTISHAGHALAPKDKKILTTSEDSNAQEIKD----IYGLNGQIEHKLAFLRTHVPKDMKLVLIGHSIGSYFTLQMLKRV---PELPVIRAFLLFPTIERMSESPNGRIATPLLCWF-RYVLYVTGYLLLKPCPETIKSLLIRRGLQVMNLENEFSPL------NILEPFCLANAAYLGGQEMMEVVKRDD-ETIKEHLC-KLTFYYGTIDPWCPKEYYEDIKKDFPEGDIRLCEKNIPHAFITHFNQEMADMIADSLKDDL 322
The following BLAST results are available for this feature:
BLAST of TCONS_00019535 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
LDAH3.904e-3833.45Lipid droplet-associated hydrolase OS=Homo sapiens... [more]
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