|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00019534 ID=TCONS_00019534|Name=TCONS_00019534|organism=Clytia hemisphaerica|type=transcript|length=1591bp
AACACAGCGCACTTAACATCAATGACGTCATGACCTGGATCTCATTCATC
CTTCCTGATTGCAAGGATAACTCAGACACTGTAATTGTTGTAATACCTGG
CAATCCAGGAGCAATCGAATTTTATGATcgatttattgaaaatttgtttc
aatATTGCAAACTACCAATATTTGGAATCTCACATGCAGGGTCACAATCT
TATTCCATCAAAAAGCTCATTAGTACGTCGTGTGTATAAGGAATTAAACC
CGAACATCAAATCAAGCGATAAACATGTGTTTACACTAGAAGAACAAATC
GAACACAAATTAGCTTTCATTCGTCAACATATTGACCCCAACAAGAAGAT
AATTCTCATTGCTCACTCATTGGGTTCTTATATAACGTTGAAAATGTTAG
AAAGATTAGACTGTGAAGAGGCTGATAGGGTAAAACAAATTATTCTATTG
TTCCCAGTCTTCGAGCGTACGATGGAGACCCAAAGTGGCCGCAAGTGGGT
GCCACTAACGCAATTCTTGCAAAGGCCTGTTATTCGAACCACAAAACTGG
TTGAACTTCTTCCACAAACtgttaaaaaatcaataatCGATTTCATTGCA
CATCAAAGACGGTTTTCGAACGATTCGAAGAAATCATTATCGAATGGAAT
CGATTCGTTGGTCACTCCGAATGGTTTGCGAAACATGTCACAAATCGCGA
AAGATTTATCGAAAATCGGACGAATCGGTGATCTTGAAAACGTCATCGAG
ACATTTAGTGAACGTCTGACTTTTTATTATGGAGCAAGTGACCTTTGGAC
TCCACTTTCGTTTTATGAAGAGATGAAAacccgatttcccgatattgATA
TACGATTGGACGGTAAGGGAATTGACCATGCTTTTGTGTTGAGCCATAGC
ACACTGGTGGCACCTATAGTCAGGGAAATCTTACAAGAAAAAATTATGAT
GGATCAGATAGCCGAATCGGGTTCAATTGATTCTTATCGGGATTACTTTT
TCCATTTCGGATTCAAACGATCTCAAATGTATAAATCAAGAGCAAGTATA
AGAAGAATTTCGAATCAATCTGGATAATCTTGGATTCTAAAAATACTGTA
TTTCTGTTTTATGGAAATGTTTTATTAGAATATTATGACAAAAATGCTAT
TTAAAGGCATTTGCTAATTCGGGCCTACGTGCTTTACACACTtgctagac
tagtaaaccacgtcgttgtatttcgctgcagcttAAGCTTGCAATGGGCT
CTATgtctatatgttcactgaatacaaatgtctttccaaaccactctccc
gcggcaatttctattttttataagaactctttataagGACTATTCctgcg
ttcctgtgtccaaggaaagacagacgcttgctagtctacaccttgccaaa
ttttccagacgtttcaaaattttcaagatcAGACGAAATAAAAGTATATA
GTTTCCCTAATATTTAGAATTTGATCATTTTATTGCAGTCTTTTCAAGCG
ATGGTTGTGGTCTGTATAGCACCTTCTGATAAAGCATAATACATATCATG
ATATTTTTGACGTAAAATGATTTATTATCCCTGTTACTACG Run BLAST on NCBI transcript from alignment at sc0000329:257383..259180- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00019534 ID=TCONS_00019534|Name=TCONS_00019534|organism=Clytia hemisphaerica|type=transcript|length=1798bp|location=Sequence derived from alignment at sc0000329:257383..259180- (Clytia hemisphaerica)
AACACAGCGCACTTAACATCAATGACGTCATGACCTGGATCTCATTCATC
CTTCCTGATTGCAAGGATAACTCAGACACTGTAATTGTTGTAATACCTGG
CAATCCAGGAGCAATCGAATTTTATGATCGATTTATTGAAAATTTGTTTC
AATATTGCAAACTACCAATATTTGGAATCTCACATGCAGGTATGATCAGA
TTCTTAGCTTGTCAATTATTATTATCGGTCGGTTAATTCTAGGTGTAACA
ATATAATTCTCAAGGCTTGACAAGTGGTATCTTTAGGAAAGCCAAACTAA
TTATTAGCTTCTCTAAAACTAAATTTTCATGTTCTATAACAATATTTTAC
TACAAGTTTAAAATTTTCCTTTGTCAAGTTTGAAACTTTCGTTTTAGGTC
ACAATCTTATTCCATCAAAAAGCTCATTAGTACGTCGTGTGTATAAGGAA
TTAAACCCGAACATCAAATCAAGCGATAAACATGTGTTTACACTAGAAGA
ACAAATCGAACACAAATTAGCTTTCATTCGTCAACATATTGACCCCAACA
AGAAGATAATTCTCATTGCTCACTCATTGGGTTCTTATATAACGTTGAAA
ATGTTAGAAAGATTAGACTGTGAAGAGGCTGATAGGGTAAAACAAATTAT
TCTATTGTTCCCAGTCTTCGAGCGTACGATGGAGACCCAAAGTGGCCGCA
AGTGGGTGCCACTAACGCAATTCTTGCAAAGGCCTGTTATTCGAACCACA
AAACTGGTTGAACTTCTTCCACAAACTGTTAAAAAATCAATAATCGATTT
CATTGCACATCAAAGACGGTTTTCGAACGATTCGAAGAAATCATTATCGA
ATGGAATCGATTCGTTGGTCACTCCGAATGGTTTGCGAAACATGTCACAA
ATCGCGAAAGATTTATCGAAAATCGGACGAATCGGTGATCTTGAAAACGT
CATCGAGACATTTAGTGAACGTCTGACTTTTTATTATGGAGCAAGTGACC
TTTGGACTCCACTTTCGTTTTATGAAGAGATGAAAACCCGATTTCCCGAT
ATTGATATACGATTGGACGGTAAGGGAATTGACCATGCTTTTGTGTTGAG
CCATAGCACACTGGTGGCACCTATAGTCAGGGAAATCTTACAAGAAAAAA
TTATGATGGATCAGATAGCCGAATCGGGTTCAATTGATTCTTATCGGGAT
TACTTTTTCCATTTCGGATTCAAACGATCTCAAATGTATAAATCAAGAGC
AAGTATAAGAAGAATTTCGAATCAATCTGGATAATCTTGGATTCTAAAAA
TACTGTATTTCTGTTTTATGGAAATGTTTTATTAGAATATTATGACAAAA
ATGCTATTTAAAGGCATTTGCTAATTCGGGCCTACGTGCTTTACACACTT
GCTAGACTAGTAAACCACGTCGTTGTATTTCGCTGCAGCTTAAGCTTGCA
ATGGGCTCTATGTCTATATGTTCACTGAATACAAATGTCTTTCCAAACCA
CTCTCCCGCGGCAATTTCTATTTTTTATAAGAACTCTTTATAAGGACTAT
TCCTGCGTTCCTGTGTCCAAGGAAAGACAGACGCTTGCTAGTCTACACCT
TGCCAAATTTTCCAGACGTTTCAAAATTTTCAAGATCAGACGAAATAAAA
GTATATAGTTTCCCTAATATTTAGAATTTGATCATTTTATTGCAGTCTTT
TCAAGCGATGGTTGTGGTCTGTATAGCACCTTCTGATAAAGCATAATACA
TATCATGATATTTTTGACGTAAAATGATTTATTATCCCTGTTACTACG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00019534-exon-sc0000329-1575043694:258991..259180 | TCONS_00019534-exon-sc0000329-1575043694:258991..259180 | Clytia hemisphaerica | exon |
| TCONS_00019534-exon-sc0000329-1575043694:257383..258783 | TCONS_00019534-exon-sc0000329-1575043694:257383..258783 | Clytia hemisphaerica | exon |
| TCONS_00019534-exon-sc0000329-1510915933:258991..259180 | TCONS_00019534-exon-sc0000329-1510915933:258991..259180 | Clytia hemisphaerica | exon |
| TCONS_00019534-exon-sc0000329-1510915933:257383..258783 | TCONS_00019534-exon-sc0000329-1510915933:257383..258783 | Clytia hemisphaerica | exon |
| TCONS_00019534-exon-sc0000329-1491911889:258991..259180 | TCONS_00019534-exon-sc0000329-1491911889:258991..259180 | Clytia hemisphaerica | exon |
| TCONS_00019534-exon-sc0000329-1491911889:257383..258783 | TCONS_00019534-exon-sc0000329-1491911889:257383..258783 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000329 | supercontig | sc0000329:257383..259180 - |
Blast
BLAST of TCONS_00019534 vs. Swiss-Prot (Human)
Match: LDAH (Lipid droplet-associated hydrolase OS=Homo sapiens GN=LDAH PE=1 SV=1) HSP 1 Score: 116.701 bits (291), Expect = 1.051e-28 Identity = 91/286 (31.82%), Postives = 141/286 (49.30%), Query Frame = 1
Query: 115 SNFMIDLLKICFNIANYQ---YLESHMQGHNLIPSKSSLVRRVYKELNPNIKSSDKHVFTLEEQIEHKLAFIRQHIDPNKKIILIAHSLGSYITLKMLERLDCEEADRVKQIILLFPVFERTMETQSGRKWVPLTQFLQRPVIRTTK--LVELLPQTVKKSIIDFIAHQRRFSNDSKKSLSNGIDSLVTPN----GLRNMSQIAKDLSKIGRIGDLENVIETFSERLTFYYGASDLWTPLSFYEEMKTRFPDIDIRLDGKGIDHAFVLSHSTLVAPIVREILQEKI 945
S F + K +++ N + + SH GH L P ++ IK ++ L QIEHKLAF+R H+ + K++LI HS+GSY TL+ML+R+ V + LLFP ER E+ +GR PL + R V+ T L++ P+T+K +I N+ S N ++ N G + M ++ K D E + E +LTFYYG D W P +YE++K FP+ DIRL K I HAF+ + +A ++ + L++ +
Sbjct: 57 SAFYVPFAKALYSLTNRRFPVWTISH-AGHALAPKDKKILTTSEDSNAQEIKD----IYGLNGQIEHKLAFLRTHVPKDMKLVLIGHSIGSYFTLQMLKRV---PELPVIRAFLLFPTIERMSESPNGRIATPLLCWF-RYVLYVTGYLLLKPCPETIKSLLIRRGLQVMNLENEF--SPLNILEPFCLANAAYLGGQEMMEVVKR--------DDETIKEHLC-KLTFYYGTIDPWCPKEYYEDIKKDFPEGDIRLCEKNIPHAFITHFNQEMADMIADSLKDDL 322
The following BLAST results are available for this feature:
|
