TCONS_00019530 (transcript) - C. hemisphaerica

Overview
NameTCONS_00019530
Unique NameTCONS_00019530
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length911

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00019530 ID=TCONS_00019530|Name=TCONS_00019530|organism=Clytia hemisphaerica|type=transcript|length=911bp
TCGGAAAAACTCAAGAAAAAGGATGCAAGAGCACAGAATAAAAAAAGCGC
CGCAGACTCTGCGTACAGATTCTCATCGCTACATTTTCATTGGGGAAGCG
ACAGTAAAAAAGGATCAGAGCATACAATTGATGGCAAAGAATATCCATTA
GAGCTCCATCTTGTCCTTCTCAACGTTGATGAATCTGCAACAACTGATCG
TATGTTGATTTGGGCTCAATTGTTTGAGGTTAAGGACACCAGAAATGCCA
AACTAGATTCCATCGTCAATAATTTGCTGAAAGCCAAGAAAGTCGGTCAA
ACAGATAACATACCTGCCTTCCTCCTGGAAGATTTATTGATAGATCAAGC
AGCTGAAAAATATTACATGTACTATGGATCTTTTACGACTCCGCCTTGCT
CTGAGATTGTCAAGTATCTTGTTAGCAGCAAGATAAGTCACGTCAATGAA
GTTCAGCTCGAGGAATTCAGAAAATTGTTGGCAAGTGCTGACGAAAAAAC
TTCAATGTCCGACAACTACCGACCGCCACAGCCTATCAACGGTCGTACCG
TTCAAAGTAACTTCGACTTGAACGAATCATCATCTGGAAGCGTTTCCTCG
ATCGCAAGTTTCTTCAATATGGTAATGGCACTGGCTGTGGGATTTTCATT
TATGATGAAAATGTAATATTGTTCTTCTTTTATATAAACCCAGATTGACG
CTTTTTAGCGAGGTCTGAATTGCTGTTTAAAAAATActgataaagtaaaa
attttgcaCTTTTCTAAACCAATCATTAAAACAAAAGAGCGCACGCAACG
TCATTTAATTGTCcaattaaacaatagaatgtcctctttctaaaattaca
ttttaacgACCCGAAAGTTTgcaatgttttgacttttaagaGATGAATAA
GAATTGGAATG
Run BLAST on NCBI

transcript from alignment at sc0000329:151192..153593-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00019530 ID=TCONS_00019530|Name=TCONS_00019530|organism=Clytia hemisphaerica|type=transcript|length=2402bp|location=Sequence derived from alignment at sc0000329:151192..153593- (Clytia hemisphaerica)
TCGGAAAAACTCAAGAAAAAGGATGCAAGAGCACAGAATAAAAAAAGCGC
CGCAGGTGAAAAAGATTAACGTTACACTTTATAAAAGGCGCTATTAACGT
GTGGAAGGGCACGCCAAATCGCCCAATTAAACATCAACGAAATTTTGGTG
CCCCCTTGAAAAACTCTTTTGGCACCCCTCTCAGATATTTTTAGGGGATG
CACTGCACCCCCTGCACCCCTTGCCAGGTAGCCACTGACTATGGTATCTT
CCTGGTAACGATAACTTCCCTTTTGTGGTTTCATTATAATGATTGAAACA
GTCTCCTAAATTCATTTATTTGTTTTCTATTTTCCTTCCTTCCCCAAACT
TAGACTCTGCGTACAGATTCTCATCGCTACATTTTCATTGGGGAAGCGAC
AGTAAAAAAGGATCAGAGCATACAATTGATGGCAAAGAATATCCATTAGA
GGTACCATATATTTACCGGCCTTTGCTCCTAACTTTCCAAAATGATAAAA
TTTCGCAGCTTTCCCTTTAGATTCAAATGCTAAGGTTGATGACAAATAAA
AAATAAAGCCAAATTTTGTATTTTATTTTTGGTAATTTATTTAGTTACCA
TAATGGCATGATGAAATAATGCCAATTTTACATTATTATTATTATTTTTA
TTATTTTTTATTCTTCTTTGTCATGATTTATTTTTAATATGAAGAATATT
TATTTGTTTAGCTCCATCTTGTCCTTCTCAACGTTGATGAATCTGCAACA
ACTGATCGTATGTTGATTTGGGCTCAATTGTTTGAGGTATGATATTTCAT
CTAGCATTATTATTAATCTAGAACAAGATAGAGGAGAATTAATGAAATTG
CCATAAAGGACGCCCTGATAAAATAGTTTACCATTGATCGTCTGAATCTT
AATTTTTGGTCTCCATGTAAACAAAAGCAGAAATCAACCAATTCATATCT
CCCTAGGTTAAGGACACCAGAAATGCCAAACTAGATTCCATCGTCAATAA
TTTGCTGAAAGCCAAGAAAGTCGGTCAAACAGATAACATACCTGCCTTCC
TCCTGGAAGATTTATTGATAGATCAAGCAGCTGAAAAATATTACATGTAC
TATGGATCTTTTACGACTCCGCCTTGCTCTGAGATTGTCAAGTATCTTGT
TAGCAGCAAGATAAGTCACGTCAATGAAGTTCAGGTAAGAGTCCTTTTAA
AAAGCATATAACGTTATTTCGATGTCTATCAGATGCCAAAAATATTTTGA
AAATACGTCAAACCACGCGATGTTGTTTCGACGTCAATCAGACGTTCACA
ACGTCGGAAAGACAACAAAACAACGTCTAACAGACGTCAAAACAATAACA
TTTTACATCAAAAGGGATGAAATATGGATTTTTCCTTTCTAAAAAGCAAA
TTTTCCCCTAGCGTATTGATATTTAAGGAAGGCTATTCTATAGCGAAAGT
AAAAATTTGACCTGCTGTCGTGACCAACTGTAGCAGAAAGGAATACAGTT
TTTCTTCCCCGTGAAATACTTGTTCTCGCACGACTGCACTTTTTTGCCTG
CGCATAATACGCATCTTTGAAAACTATAGAAAAAAATAGATTCAAGGCAA
CCATTACTGATGTGGGAGTTTAAAAGTGTAACTAAGCTACTACTATTCAT
AGAAAGAGTTGCTCAATACCCCATGGTTTTATTCTTATTATTCAATTTAA
TCCTGTCAACCCTATCCCCCATATTTTTTTCCAAAAAGTTTGCCCCCTTT
TTCATAGGTGCTTTAAGACTACGTCGAAGAAATACGATGGAGTGACTTTT
AATTGACTTACAGTATCTTTTTACGAGGATTGCACTCCATTATATTTCTC
GACGTGGTTGCTCTATTGTTTTAGATCCACCAGTGTTTGTCGTAGGACCC
TCTATTATTTGGGACCTCAGAATACTTATTTACTTTGTCATCAACAGCTC
GAGGAATTCAGAAAATTGTTGGCAAGTGCTGACGAAAAAACTTCAATGTC
CGACAACTACCGACCGCCACAGCCTATCAACGGTCGTACCGTTCAAAGTA
ACTTCGACTTGAACGAATCATCATCTGGAAGCGTTTCCTCGATCGCAAGT
TTCTTCAATATGGTAATGGCACTGGCTGTGGGATTTTCATTTATGATGAA
AATGTAATATTGTTCTTCTTTTATATAAACCCAGATTGACGCTTTTTAGC
GAGGTCTGAATTGCTGTTTAAAAAATACTGATAAAGTAAAAATTTTGCAC
TTTTCTAAACCAATCATTAAAACAAAAGAGCGCACGCAACGTCATTTAAT
TGTCCAATTAAACAATAGAATGTCCTCTTTCTAAAATTACATTTTAACGA
CCCGAAAGTTTGCAATGTTTTGACTTTTAAGAGATGAATAAGAATTGGAA
TG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_010975XLOC_010975Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00019530-exon-sc0000329-1575043694:153539..153593TCONS_00019530-exon-sc0000329-1575043694:153539..153593Clytia hemisphaericaexon
TCONS_00019530-exon-sc0000329-1575043694:153143..153240TCONS_00019530-exon-sc0000329-1575043694:153143..153240Clytia hemisphaericaexon
TCONS_00019530-exon-sc0000329-1575043694:152808..152882TCONS_00019530-exon-sc0000329-1575043694:152808..152882Clytia hemisphaericaexon
TCONS_00019530-exon-sc0000329-1575043694:152410..152637TCONS_00019530-exon-sc0000329-1575043694:152410..152637Clytia hemisphaericaexon
TCONS_00019530-exon-sc0000329-1575043694:151192..151646TCONS_00019530-exon-sc0000329-1575043694:151192..151646Clytia hemisphaericaexon
TCONS_00019530-exon-sc0000329-1510915933:153539..153593TCONS_00019530-exon-sc0000329-1510915933:153539..153593Clytia hemisphaericaexon
TCONS_00019530-exon-sc0000329-1510915933:153143..153240TCONS_00019530-exon-sc0000329-1510915933:153143..153240Clytia hemisphaericaexon
TCONS_00019530-exon-sc0000329-1510915933:152808..152882TCONS_00019530-exon-sc0000329-1510915933:152808..152882Clytia hemisphaericaexon
TCONS_00019530-exon-sc0000329-1510915933:152410..152637TCONS_00019530-exon-sc0000329-1510915933:152410..152637Clytia hemisphaericaexon
TCONS_00019530-exon-sc0000329-1510915933:151192..151646TCONS_00019530-exon-sc0000329-1510915933:151192..151646Clytia hemisphaericaexon
TCONS_00019530-exon-sc0000329-1491911889:153539..153593TCONS_00019530-exon-sc0000329-1491911889:153539..153593Clytia hemisphaericaexon
TCONS_00019530-exon-sc0000329-1491911889:153143..153240TCONS_00019530-exon-sc0000329-1491911889:153143..153240Clytia hemisphaericaexon
TCONS_00019530-exon-sc0000329-1491911889:152808..152882TCONS_00019530-exon-sc0000329-1491911889:152808..152882Clytia hemisphaericaexon
TCONS_00019530-exon-sc0000329-1491911889:152410..152637TCONS_00019530-exon-sc0000329-1491911889:152410..152637Clytia hemisphaericaexon
TCONS_00019530-exon-sc0000329-1491911889:151192..151646TCONS_00019530-exon-sc0000329-1491911889:151192..151646Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000329supercontigsc0000329:151192..153593 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0505381	0.0319055	0.171665	0	0	0.161567	0.107039	0.221866	0.353255	0.0652533	0	0.607755	0.775197	0.283482	28.9981	15.2917	4.56076	6.00292	224.069	122.74	0.548343	0	0	0.792605	0.360691	0.0142759	1.90469	0.731015	0.372875	0.036999
Blast
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BLAST of TCONS_00019530 vs. Swiss-Prot (Human)
Match: CAH7 (Carbonic anhydrase 7 OS=Homo sapiens GN=CA7 PE=1 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 1.698e-29
Identity = 65/190 (34.21%), Postives = 97/190 (51.05%), Query Frame = 1 
Query:   22 DARAQNKKSAADSAYRFSSLHFHWGSDSKKGSEHTIDGKEYPLELHLVLLNVDESAT-------TDRMLIWAQLFEVKDTRNAKLDSIVNNLLKAKKVGQTDNIPAFLLEDLLIDQAAEKYYMYYGSFTTPPCSEIVKYLVSSKISHVNEVQLEEFRKLLASA--DEKTSMSDNYRPPQPINGRTVQSNF 564
            D R        +  YR    HFHWG     GSEHT+DGK +P ELHLV  N  + +T        D + +     E  D  +  ++ + + L   +  G       F  + LL   A+  Y+ Y GS TTPP SE V ++V  +   ++E Q+ +FR LL ++  DE+  M +N+RPPQP+ GR V+++F
Sbjct:   76 DDRTVVTGGPLEGPYRLKQFHFHWGKKHDVGSEHTVDGKSFPSELHLVHWNAKKYSTFGEAASAPDGLAVVGVFLETGD-EHPSMNRLTDALYMVRFKGTKAQFSCFNPKCLL--PASRHYWTYPGSLTTPPLSESVTWIVLREPICISERQMGKFRSLLFTSEDDERIHMVNNFRPPQPLKGRVVKASF 262
The following BLAST results are available for this feature:
BLAST of TCONS_00019530 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
CAH71.698e-2934.21Carbonic anhydrase 7 OS=Homo sapiens GN=CA7 PE=1 S... [more]
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