TCONS_00019529 (transcript) - C. hemisphaerica

Overview
NameTCONS_00019529
Unique NameTCONS_00019529
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1219

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00019529 ID=TCONS_00019529|Name=TCONS_00019529|organism=Clytia hemisphaerica|type=transcript|length=1219bp
NGCGGCTGACGAATTTCTCTGATAATTACCATGGTTTGCCCTAAATAAGA
ACTTGGAACTTTTCTTTACATTttagtgaaagaaaaataatctaACAGAT
GTTTCGGTGAAAgtcatttgtttttaaagaagatAATGGATGAGTTAAGT
GTGGACACGTTTTGTCACCATTCTTCCAAGTATAGTGAAGAAGCTTTCCA
GAAGATGACCACTTAtcgaaatgaaaacaaattcaCGGATATTGTTCTGG
TGGCTGGAAGTAAAAGAATTCCTGCTCATAAAGTGATCATTTCAGCTCTT
TGTGATTATTTCCATGCCATGTTTTCCAATGAACTGCAAGAGACTCATCA
AAATGTGGTGACCATGAACGATGTGGACCCTGAAGCACTGGAAGCTCTTG
TTGATTATGCTTACACAGCTAAGCTGGAAATACGGGTGGACAATGTGGAG
AGCTTGTTAGCGTCGGCTTGTCTGCTTCAGGTGGATGATGTCAAGGATGC
TTGCTGTGAATTCATGAAAAGTCAATTACATCCATCCAACTGTCTCGGCA
TACGTGCTTTTGCAGATGCACATAACTGCGATCAACTGTTCGACATCGCC
AATAATTACACCAAGAATAATTTTGCAGACATTTCAAAGAATCAGGAATT
CTTCTTATTGAATTCGGACCAGTTGAAAGAAATACTTAGTAGTGACGATT
TGAATGTGAGTAAAGAAGAAGAAGTTTTTTACGCCATGTTCTCTTGGATC
AAGTTCGATGAAGAGAACAGACAAAAATTTCTTGGGACAGTTTTATCAGG
AGTTCGTTTATCCCTACTTTCGCCGCATTTCTTGGTGAAAGAAGTCGAAC
CTGTCGTCAAAAATGATGCCACGTGTAAAGACTTATTATTAGAGACTTTC
AAATATCGATTACTACCTGACCACAAATGTCAGCCACAACTATTGACGCA
TCGAGCGCGCAAGGGTACGATTGGTGTCATCTACGCTGTCGGAGGTATAG
ACGCAGTGAAAGGAGCAGCGACGGGAGTAGAAGAATACAACCCTCGAACC
AACGAATGGNCAGCCACAACTATTGACGCATCGAGCGCGCAAGGGTACGA
TTGGTGTCATCTACGCTGTCGGAGGTATTCATCTGCATTCATATTCTtat
aagttttaaaacaaaaatgtatcAGCGTCTTTCTTCTTATCCACAACCAC
AACCTTCAATAAAGTCCGG
Run BLAST on NCBI

protein sequence of TCONS_00019529-protein

>TCONS_00019529-protein ID=TCONS_00019529-protein|Name=TCONS_00019529-protein|organism=Clytia hemisphaerica|type=polypeptide|length=338bp
MDELSVDTFCHHSSKYSEEAFQKMTTYRNENKFTDIVLVAGSKRIPAHKV
IISALCDYFHAMFSNELQETHQNVVTMNDVDPEALEALVDYAYTAKLEIR
VDNVESLLASACLLQVDDVKDACCEFMKSQLHPSNCLGIRAFADAHNCDQ
LFDIANNYTKNNFADISKNQEFFLLNSDQLKEILSSDDLNVSKEEEVFYA
MFSWIKFDEENRQKFLGTVLSGVRLSLLSPHFLVKEVEPVVKNDATCKDL
LLETFKYRLLPDHKCQPQLLTHRARKGTIGVIYAVGGIDAVKGAATGVEE
YNPRTNEWXATTIDASSAQGYDWCHLRCRRYSSAFIFL
Run BLAST on NCBI

transcript from alignment at sc0000329:51941..54801-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00019529 ID=TCONS_00019529|Name=TCONS_00019529|organism=Clytia hemisphaerica|type=transcript|length=2861bp|location=Sequence derived from alignment at sc0000329:51941..54801- (Clytia hemisphaerica)
NGCGGCTGACGAATTTCTCTGATAATTACCATGGTTTGCCCTAAATAAGA
ACTTGGAACTTTTCTTTACATTTTAGTGAAAGAAAAATAATCTAACAGAT
GTTTCGGTGAAAGTCATTTGTTTTTAAAGAAGATAATGGATGAGTTAAGT
GTGGACACGTTTTGTCACCATTCTTCCAAGTATAGTGAAGAAGCTTTCCA
GAAGATGACCACTTATCGAAATGAAAACAAATTCACGGATATTGTTCTGG
TGGCTGGAAGTAAAAGAATTCCTGCTCATAAAGTGATCATTTCAGCTCTT
TGTGATTATTTCCATGCCATGTTTTCCAATGAACTGCAAGAGACTCATCA
AAATGTGGTGACCATGAACGATGTGGACCCTGAAGCACTGGAAGCTCTTG
TTGATTATGCTTACACAGCTAAGCTGGAAATACGGGTGGACAATGTGGAG
AGCTTGTTAGCGTCGGCTTGTCTGCTTCAGGTGGATGATGTCAAGGATGC
TTGCTGTGAATTCATGAAAAGTCAATTACATCCATCCAACTGTCTCGGCA
TACGTGCTTTTGCAGATGCACATAACTGCGATCAACTGTTCGACATCGCC
AATAATTACACCAAGAATAATTTTGCAGACATTTCAAAGAATCAGGAATT
CTTCTTATTGAATTCGGACCAGTTGAAAGAAATACTTAGTAGTGACGATT
TGAATGTGAGTAAAGAAGAAGAAGTTTTTTACGCCATGTTCTCTTGGATC
AAGTTCGATGAAGAGAACAGACAAAAATTTCTTGGGACAGTTTTATCAGG
AGTTCGTTTATCCCTACTTTCGCCGCATTTCTTGGTGAAAGAAGTCGAAC
CTGTCGTCAAAAATGATGCCACGTGTAAAGACTTATTATTAGAGACTTTC
AAATATCGATTACTACCTGACCACAAATGTCAGCCACAACTATTGACGCA
TCGAGCGCGCAAGGGTACGATTGGTGTCATCTACGCTGTCGGAGGTATTC
ATCTGCATTCATATTCTTATAAGTTTTAAAACAAAAATGTATCAGCGTCT
TTCTTCTTATCCACAACCACAACCTTCAATAAAGTCCGGCGAAAATTTCA
GACAGTCAAGTAGTAAATTCGGAAAATTCAGACATTGTCCTACACGTTTA
CACATACCTCTCCGACTGTCATGATTGACCTCCCCCAGCTCCCGANNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNAGATAATTCACGCAGAAGATGCTATATATGGTCAATTTTAGAC
CAAAATAACCAAAATGTGGCGAAAAGTGGAACTTGCGCATGAAATATCTC
GAGTTAGGTTTCAGCTGGATCTTATTCTTTTCCTACAAACAGCCTGTATT
TTTGTAACACGACCACACTAGTAGAATAATGCTATGATCTTCATTTTTAT
CTGTTTTTTTATATCAGAAATTATTTAATCTTAGAACGTCATGAATTCGA
AAAAAAAATCAAAAAACATTTCAGTCAAATAATACAGCTTATAAATTTCC
CCTGACTGATTTAAAAAAGGGCTCTTTTTTGATGTTTAAACTTTGAACGA
TATCTTTCGATGGAATAAATTTCTTTCAATTTTTTTTTCACATTAATGAT
GTTCTAAGAACAAAGAATCACTCGTGTGAAAATGATAATTATAGCACAAT
TATTTAAGAAATTGATTTTCTTCTTCTTCATTTTCAATCTTCATTTCCCG
ATCTTTTTTGAATTTTTTCTTTATGATAATATTCCACTCCTGTTTATCTT
TTCAACAAGCACAAAACCGCTAACTAATTCGAATTCTATCAAAAGTTATA
GCTTCTTTTGTCTCTGCTGCAAATTATATTGTGACAGACTTTAGATTATG
GATTGGCAGCTTCTGAGAAAATAATATTAATTGCTCCACTCCTTCCCCGT
GAAAATGACAAGACTCTTTTCTTCATCCATTCACAGGTATAGACGCAGTG
AAAGGAGCAGCGACGGGAGTAGAAGAATACAACCCTCGAACCAACGAATG
GNCAGCCACAACTATTGACGCATCGAGCGCGCAAGGGTACGATTGGTGTC
ATCTACGCTGTCGGAGGTATTCATCTGCATTCATATTCTTATAAGTTTTA
AAACAAAAATGTATCAGCGTCTTTCTTCTTATCCACAACCACAACCTTCA
ATAAAGTCCGG

Coding sequence (CDS) from alignment at sc0000329:51941..54801-

>TCONS_00019529 ID=TCONS_00019529|Name=TCONS_00019529|organism=Clytia hemisphaerica|type=CDS|length=2034bp|location=Sequence derived from alignment at sc0000329:51941..54801- (Clytia hemisphaerica)
GTATAGACGCAGTGAAAGGAGCAGCGACGGGAGTAGAAGAATACAACCCT
CGAACCAACGAATGGNCAGCCACAACTATTGACGCATCGAGCGCGCAAGG
GTACGATTGGTGTCATCTACGCTGTCGGAGGTATTCATCTGCATTCATAT
TCTTATAAATGGATGAGTTAAGTGTGGACACGTTTTGTCACCATTCTTCC
AAGTATAGTGAAGAAGCTTTCCAGAAGATGACCACTTATCGAAATGAAAA
CAAATTCACGGATATTGTTCTGGTGGCTGGAAGTAAAAGAATTCCTGCTC
ATAAAGTGATCATTTCAGCTCTTTGTGATTATTTCCATGCCATGTTTTCC
AATGAACTGCAAGAGACTCATCAAAATGTGGTGACCATGAACGATGTGGA
CCCTGAAGCACTGGAAGCTCTTGTTGATTATGCTTACACAGCTAAGCTGG
AAATACGGGTGGACAATGTGGAGAGCTTGTTAGCGTCGGCTTGTCTGCTT
CAGGTGGATGATGTCAAGGATGCTTGCTGTGAATTCATGAAAAGTCAATT
ACATCCATCCAACTGTCTCGGCATACGTGCTTTTGCAGATGCACATAACT
GCGATCAACTGTTCGACATCGCCAATAATTACACCAAGAATAATTTTGCA
GACATTTCAAAGAATCAGGAATTCTTCTTATTGAATTCGGACCAGTTGAA
AGAAATACTTAGTAGTGACGATTTGAATGTGAGTAAAGAAGAAGAAGTTT
TTTACGCCATGTTCTCTTGGATCAAGTTCGATGAAGAGAACAGACAAAAA
TTTCTTGGGACAGTTTTATCAGGAGTTCGTTTATCCCTACTTTCGCCGCA
TTTCTTGGTGAAAGAAGTCGAACCTGTCGTCAAAAATGATGCCACGTGTA
AAGACTTATTATTAGAGACTTTCAAATATCGATTACTACCTGACCACAAA
TGTCAGCCACAACTATTGACGCATCGAGCGCGCAAGGGTACGATTGGTGT
CATCTACGCTGTCGGAGGTATAGACGCAGTGAAAGGAGCAGCGACGGGAG
TAGAAGAATACAACCCTCGAACCAACGAATGGNCAGCCACAACTATTGAC
GCATCGAGCGCGCAAGGGTACGATTGGTGTCATCTACGCTGTCGGAGGTA
TTCATCTGCATTCATATTCTTATAAATGGATGAGTTAAGTGTGGACACGT
TTTGTCACCATTCTTCCAAGTATAGTGAAGAAGCTTTCCAGAAGATGACC
ACTTATCGAAATGAAAACAAATTCACGGATATTGTTCTGGTGGCTGGAAG
TAAAAGAATTCCTGCTCATAAAGTGATCATTTCAGCTCTTTGTGATTATT
TCCATGCCATGTTTTCCAATGAACTGCAAGAGACTCATCAAAATGTGGTG
ACCATGAACGATGTGGACCCTGAAGCACTGGAAGCTCTTGTTGATTATGC
TTACACAGCTAAGCTGGAAATACGGGTGGACAATGTGGAGAGCTTGTTAG
CGTCGGCTTGTCTGCTTCAGGTGGATGATGTCAAGGATGCTTGCTGTGAA
TTCATGAAAAGTCAATTACATCCATCCAACTGTCTCGGCATACGTGCTTT
TGCAGATGCACATAACTGCGATCAACTGTTCGACATCGCCAATAATTACA
CCAAGAATAATTTTGCAGACATTTCAAAGAATCAGGAATTCTTCTTATTG
AATTCGGACCAGTTGAAAGAAATACTTAGTAGTGACGATTTGAATGTGAG
TAAAGAAGAAGAAGTTTTTTACGCCATGTTCTCTTGGATCAAGTTCGATG
AAGAGAACAGACAAAAATTTCTTGGGACAGTTTTATCAGGAGTTCGTTTA
TCCCTACTTTCGCCGCATTTCTTGGTGAAAGAAGTCGAACCTGTCGTCAA
AAATGATGCCACGTGTAAAGACTTATTATTAGAGACTTTCAAATATCGAT
TACTACCTGACCACAAATGTCAGCCACAACTATTGACGCATCGAGCGCGC
AAGGGTACGATTGGTGTCATCTACGCTGTCGGAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_010974XLOC_010974Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00019529-proteinTCONS_00019529-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00019529-exon-sc0000329-1575043694:53808..54801TCONS_00019529-exon-sc0000329-1575043694:53808..54801Clytia hemisphaericaexon
TCONS_00019529-exon-sc0000329-1575043694:51941..52165TCONS_00019529-exon-sc0000329-1575043694:51941..52165Clytia hemisphaericaexon
TCONS_00019529-exon-sc0000329-1510915933:53808..54801TCONS_00019529-exon-sc0000329-1510915933:53808..54801Clytia hemisphaericaexon
TCONS_00019529-exon-sc0000329-1510915933:51941..52165TCONS_00019529-exon-sc0000329-1510915933:51941..52165Clytia hemisphaericaexon
TCONS_00019529-exon-sc0000329-1491911889:53808..54801TCONS_00019529-exon-sc0000329-1491911889:53808..54801Clytia hemisphaericaexon
TCONS_00019529-exon-sc0000329-1491911889:51941..52165TCONS_00019529-exon-sc0000329-1491911889:51941..52165Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000329supercontigsc0000329:51941..54801 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
49.6688	44.53	16.8236	9.68876	17.8585	14.2992	15.6707	17.588	14.1786	16.5725	13.3454	9.96586	12.6619	10.869	9.1552	10.3601	15.1887	12.4327	7.72943	9.14328	11.3434	11.48	24.3263	22.5189	15.7643	13.9683	7.41747	5.55157	16.8037	17.0011
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR000210BTB/POZ_dom
IPR011705BACK
IPR011333SKP1/BTB/POZ
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005515 protein binding
Blast
[Close]
BLAST of TCONS_00019529 vs. Swiss-Prot (Human)
Match: KLHL5 (Kelch-like protein 5 OS=Homo sapiens GN=KLHL5 PE=2 SV=3)

HSP 1 Score: 297.36 bits (760), Expect = 2.411e-92
Identity = 134/309 (43.37%), Postives = 212/309 (68.61%), Query Frame = 1 
Query:  136 MDELSVDTFCHHSSKYSEEAFQKMTTYRNENKFTDIVLVAGSKRIPAHKVIISALCDYFHAMFSNELQETHQNVVTMNDVDPEALEALVDYAYTAKLEIRVDNVESLLASACLLQVDDVKDACCEFMKSQLHPSNCLGIRAFADAHNCDQLFDIANNYTKNNFADISKNQEFFLLNSDQLKEILSSDDLNVSKEEEVFYAMFSWIKFDEENRQKFLGTVLSGVRLSLLSPHFLV-KEVEPVVKNDATCKDLLLETFKYRLLPDHKCQPQLLTHRARKGTIGVIYAVGGIDAVKGAATGVEEYNPRTNEW 1059
            M+  + D F   +  ++E+ F+KM  Y    +  D++LVAG +RIPAH++++S++ DYF AMF+N+++E  Q  + M  V+P +L +L+ YAYT +LE++ DN+E LL++ACLLQ+  V +ACC+F+  QLHPSNCLGIR+FADA  C  L  +A+NYT  +F ++ +NQEF LL + ++ ++L+SDD+N+  EE +  A+ +W++ D E R+K L  +L+ +RL LL+P FL   E   + ++D  C+ L++E  KY LLP+ +   Q    + RK T+G ++AVGG+D+ KG AT +E+Y+ RTN W
Sbjct:  188 MEPCTSDEF-FQALNHAEQTFKKMENYLRHKQLCDVILVAGDRRIPAHRLVLSSVSDYFAAMFTNDVREARQEEIKMEGVEPNSLWSLIQYAYTGRLELKEDNIECLLSTACLLQLSQVVEACCKFLMKQLHPSNCLGIRSFADAQGCTDLHKVAHNYTMEHFMEVIRNQEFVLLPASEIAKLLASDDMNIPNEETILNALLTWVRHDLEQRRKDLSKLLAYIRLPLLAPQFLADMENNVLFRDDIECQKLIMEAMKYHLLPERRPMLQSPRTKPRKSTVGTLFAVGGMDSTKG-ATSIEKYDLRTNMW 494
The following BLAST results are available for this feature:
BLAST of TCONS_00019529 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
KLHL52.411e-9243.37Kelch-like protein 5 OS=Homo sapiens GN=KLHL5 PE=2... [more]
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