TCONS_00019528 (transcript) - C. hemisphaerica

Overview
NameTCONS_00019528
Unique NameTCONS_00019528
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length596

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00019528 ID=TCONS_00019528|Name=TCONS_00019528|organism=Clytia hemisphaerica|type=transcript|length=596bp
taaGTGAAGACATGCCGGACAGGGTTGtggcaaaattttcagattataGG
AAGTATCTTTGTCACAAACGACTATTGTTGTTCTTTCAACAGGTGGACGT
GATGGGTTGATGACACTGAACAATGTGGAATGTTTCGATCCCAAAACACA
GAAGTGGGAAAACATCACACCCATGCTAACACATCGTCATGGTTTGGGTG
TGGCTGTACTTTCAGGCCCCATCTATGCCGTAGGTGGACACGATGGATGG
TCTTATCTCAGCACTGTGGAAAGATATGATCCAGTGACAGGACAATGGAG
TTTCGTTGCTCCCATGACTACACCACGAAGCACGGTGGGAGTTGCTGTTC
TCCATAACAAGCTGTATGCAGTGGGTGGACGTGATGGGTCCTCGTGTTTG
AGTTCTGTCGAAGTGTACGACCCGCACACCAACAAGTGGAGTTTGGCTGC
TCCCATGATCAAGCGGAGAGGAGGTGTGGGTGTGTCAGTACTTCGTGGAC
ACCTCTATGCAGCTGGAGGTCACGATGCTCCTGCCAGCTCCGATTACTCC
AAACAATTTTCATCGGTTGAAAGATATGACCCGCGCATCGATCANN
Run BLAST on NCBI

transcript from alignment at sc0000329:49623..50979-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00019528 ID=TCONS_00019528|Name=TCONS_00019528|organism=Clytia hemisphaerica|type=transcript|length=1357bp|location=Sequence derived from alignment at sc0000329:49623..50979- (Clytia hemisphaerica)
TAAGTGAAGACATGCCGGACAGGGTTGTGGCAAAATTTTCAGATTATAGG
AAGTATCTTTGTCACAAACGACTATTGTTGTTCTTTCAACAGGTGGACGT
GATGGGTTGATGACACTGAACAATGTGGAATGTTTCGATCCCAAAACACA
GAAGTGGGAAAACATCACACCCATGCTAACACATCGTCATGGTTTGGGTG
TGGCTGTACTTTCAGGCCCCATCTATGCCGTAGGTGGACACGATGGATGG
TCTTATCTCAGCACTGTGGAAAGGTGAATAAAACTGCTCCTCTCATTTTC
AAGAAGTTAATGCGTCTTCTCTGTAACGTTTACAAATGNACTGCTCCTCT
CATTTTCAATAAGTTAATGCGTCTTCTCTGTAACGTTTACAAATGAAATC
TTTTATAATATCATTATATTCGACACTTGGTCTAACTTTTTTTTATTGTT
GAACGACTGACCCTTCTTTTTGATTAGTGGCGTGGCTTATATCAAATCAA
CTTAGTAGTTTTGCCTTCAAAAACATCCTTCGAATATACCTTTACAATAC
CAGAGCGTGTTTGCTTTCATTAGATATGATCCAGTGACAGGACAATGGAG
TTTCGTTGCTCCCATGACTACACCACGAAGCACGGTGGGAGTTGCTGTTC
TCCATAACAAGCTGTATGCAGTGGGTGGACGTGATGGGTCCTCGTGTTTG
AGTTCTGTCGAAGTGTACGACCCGCACACCAACAAGTGGAGTTTGGCTGC
TCCCATGATCAAGCGGAGAGGAGGTAAGCTGTTTTCATGTTATATGTTTC
ATTGGTAGCATTTTTCTTGGTCTAATGAAGATTGGCAGGTCAGTTGATGC
TTATTGAATTTATTTGAACCCCTATGGTATTGTAGGAAGCACTTTGTATC
GAACACGTTAGAATGCTATAACGCATTGGAAGTGTTCTGAGAAGAGCAGG
ATTAAGGAAGTTATTTACTTGTCATCATAATAAGTCTAATTAGCAAGCGA
ATTAGATCTTACTTTAAACCCTTCTCTAATCGGTTAAAAAAAAAAGATGC
AAAATATGTGGTATTTTTTAATGTATTGTGGTGGTTTACATAACTCCTGC
TTAACAATTCTTAACTATAGATGCAATAATGATAAGAAATAGTGTGACGT
AGATATTGAATCAATCGAATTCTTTTGTTAAAGGATATATACAATAAATG
ACAGTCTACATTATTTCACCCTTTCTTTTTGTAGGTGTGGGTGTGTCAGT
ACTTCGTGGACACCTCTATGCAGCTGGAGGTCACGATGCTCCTGCCAGCT
CCGATTACTCCAAACAATTTTCATCGGTTGAAAGATATGACCCGCGCATC
GATCANN
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_010973XLOC_010973Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00019528-exon-sc0000329-1575043694:50707..50979TCONS_00019528-exon-sc0000329-1575043694:50707..50979Clytia hemisphaericaexon
TCONS_00019528-exon-sc0000329-1575043694:50207..50406TCONS_00019528-exon-sc0000329-1575043694:50207..50406Clytia hemisphaericaexon
TCONS_00019528-exon-sc0000329-1575043694:49623..49745TCONS_00019528-exon-sc0000329-1575043694:49623..49745Clytia hemisphaericaexon
TCONS_00019528-exon-sc0000329-1510915933:50707..50979TCONS_00019528-exon-sc0000329-1510915933:50707..50979Clytia hemisphaericaexon
TCONS_00019528-exon-sc0000329-1510915933:50207..50406TCONS_00019528-exon-sc0000329-1510915933:50207..50406Clytia hemisphaericaexon
TCONS_00019528-exon-sc0000329-1510915933:49623..49745TCONS_00019528-exon-sc0000329-1510915933:49623..49745Clytia hemisphaericaexon
TCONS_00019528-exon-sc0000329-1491911889:50707..50979TCONS_00019528-exon-sc0000329-1491911889:50707..50979Clytia hemisphaericaexon
TCONS_00019528-exon-sc0000329-1491911889:50207..50406TCONS_00019528-exon-sc0000329-1491911889:50207..50406Clytia hemisphaericaexon
TCONS_00019528-exon-sc0000329-1491911889:49623..49745TCONS_00019528-exon-sc0000329-1491911889:49623..49745Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000329supercontigsc0000329:49623..50979 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
27.0256	25.5417	8.65864	4.62534	8.89364	6.70717	12.1837	8.38879	8.0045	8.23607	6.22123	4.68032	6.99072	4.89793	4.57326	4.67345	5.47175	6.68622	0.500465	5.20555	5.17983	5.5973	10.4184	14.389	8.48218	9.26025	1.17815	3.0012	10.0495	8.07315
Blast
[Close]
BLAST of TCONS_00019528 vs. Swiss-Prot (Human)
Match: KLHL5 (Kelch-like protein 5 OS=Homo sapiens GN=KLHL5 PE=2 SV=3)

HSP 1 Score: 234.572 bits (597), Expect = 6.114e-72
Identity = 121/167 (72.46%), Postives = 136/167 (81.44%), Query Frame = 2 
Query:   92 GGRDGLMTLNNVECFDPKTQKWENITPMLTHRHGLGVAVLSGPIYAVGGHDGWSYLSTVERYDPVTGQWSFVAPMTTPRSTVGVAVLHNKLYAVGGRDGSSCLSSVEVYDPHTNKWSLAAPMIKXXXXXXXXXXXXHLYAAGGHDAPASSDYSKQFSSVERYDPRID 592
            GGRDGL TLN VEC++PKT+ W  + PM THRHGLGVAVL GP+YAVGGHDGWSYL+TVER+DP   QW+FVA M+TPRSTVGVAVL  KLYAVGGRDGSSCL SVE +DPHTNKW+L A M KRRGGVGV+   G LYA GGHDAPAS+  S+    VERYDP+ D
Sbjct:  520 GGRDGLKTLNTVECYNPKTKTWSVMPPMSTHRHGLGVAVLEGPMYAVGGHDGWSYLNTVERWDPQARQWNFVATMSTPRSTVGVAVLSGKLYAVGGRDGSSCLKSVECFDPHTNKWTLCAQMSKRRGGVGVTTWNGLLYAIGGHDAPASNLTSRLSDCVERYDPKTD 686

HSP 2 Score: 127.487 bits (319), Expect = 2.042e-33
Identity = 66/130 (50.77%), Postives = 82/130 (63.08%), Query Frame = 2 
Query:   86 STGGRDGLMTLNNVECFDPKTQKWENITPMLTHRHGLGVAVLSGPIYAVGGHDG-----WSYLS-TVERYDPVTGQWSFVAPMTTPRSTVGVAVLHNKLYAVGGRDGSSCLSSVEVYDPHTNKWSLAAPM 457
            + GGRDG   L +VECFDP T KW     M   R G+GV   +G +YA+GGHD       S LS  VERYDP T  W+ VA M+  R  VGV +L +KLYAVGG DG + L++VE YDP TN+W+  AP+
Sbjct:  612 AVGGRDGSSCLKSVECFDPHTNKWTLCAQMSKRRGGVGVTTWNGLLYAIGGHDAPASNLTSRLSDCVERYDPKTDMWTAVASMSISRDAVGVCLLGDKLYAVGGYDGQAYLNTVEAYDPQTNEWTQVAPL 741
The following BLAST results are available for this feature:
BLAST of TCONS_00019528 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
KLHL56.114e-7272.46Kelch-like protein 5 OS=Homo sapiens GN=KLHL5 PE=2... [more]
back to top