TCONS_00019516 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00019516
Unique Name	TCONS_00019516
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	4276

Sequence

The following sequences are available for this feature:

transcript sequence
transcript from alignment at sc0000329:248520..259810+

transcript sequence

>TCONS_00019516 ID=TCONS_00019516|Name=TCONS_00019516|organism=Clytia hemisphaerica|type=transcript|length=4276bp
ATCTGAAAGCATTTAACCAAAAGATCCACAGAAGAAATGAAGTTTGCAGG
ttttattttctgtttgttGGTTATTTGTGCTAACTCTGTATTGATGAAGG
ATGACCAAGACTTCAAGATTCTTGATGAAATGGAAAACGCCTTGTCTTCG
AAAAATACAACATTGAGTTTTGAAGACATTGATAAAATGATTTATGAGCA
ACTAACAAAAGAGAAAACTGACAAACAAGAGGAAAGTTCAAAGGCAGAAG
GGTTGAAAATGGTTCAACAAATCCTAAATGATGAACTGCCGCAAAAGAAC
AGCCAACAAGATGTTCAAGCTGTGAAGGAAAAGAGAAAGGCAGACGATAT
TGAATACATTGCCAAACTCTTCAAAGAAGTCTTCGATTCTCAAAAGAAAG
AGGATGGACAAGCTGTGGAAAAGAAAGAATATGGACAAGCTGTGGAAAAG
CAAGAAGATGGAGTAGAAACTGTGGGAAAGAAGGAAAAGGAGGACGAAGC
AGCAGTGGAAGAGCCAGTCTGTGAAGACGAACTGTCAACACAAGATTGTT
ATGATTTGGCGTACAATGGAAGCTGCACAGATCCAAAGACCAGTAaacaa
acattgaaagtttGTAAACGTTCCTGTCGTGTATGTTGTGCGGACAATGA
AAAATCACAGACGTGTaaacttttgaaaacattacgtaatccGATGAGTA
TATGCCAAATGGCGAACACTCATGAACGCCTGAGAATCACTTGCACCAAA
ACATGTCAATATTGTGCTAAGGCAATGACGGAGGTTCCATGCATTCGATC
CAAATATGGATGCTGTTGGGATGGCTCCATTGCGCAATTTCATATCGGTA
CCATGGAAGATGGTTGCCCAGCTTGCAGGGATTATGGAGGTGAGAAGTTT
TGTAAGAGCTTTCAACCAGATTGTAAAGAAAGATACACTTTGAAGGGAGA
ACAAATCAGAGCACTTTGTCCAATGACATGCCAAAGATGCGGAGTTTTCA
AGAAGTGTGCAGACAATCCTCGTTTACAAGACACTTGTGGGTTGTTGAGA
AACGATGGTGCTTGTGAATCCATGTTCAACGCCATGAAATACAATTGCCC
TAAAACTTGCAATATATGTCATAAAGCGACGATCGACTGCAAAGACACTC
GTTTTGGATGttgtgaaaatggtaaaacCATTGCCAAAGATCCTTCAAAG
TCGAACTGTCCTGAATGTCACGATGACATTACGTCACCCGTTGCTAAGCA
TTGCCAACGTTTGGTCGCCCACCGTGTTTGTAAAACACACCCAGCGTTCA
TGAGGAAATACTGTGGTGGTTCGTGTAAATTCTGCACCAAATGAAAATGG
AGTATTATCATGTTGGCGGCGTGAGAATAGTgccttatttttttgaatat
tttgaataaaGATTCTTTGCTGTATAGAACACACTATGATAGAGAGCTTT
AGTTTCTGATTACGCGCTTTTTGTTTATAAGAGTGTAAACAGCCCGAAGG
GCTAGGagagaatctttaacctttctcaagcaagaaaaagtgaagccttt
tcgagtggtatatttttttaaatctagccaGAAATTCTATTTTCAATGTG
TGTTATACATATTAAATAATTTAGATTCAgtttggatcctaacctaaaaa
tgttattaagaatattttatacCCAAGATGGAATGGAAAAACACCACTCG
TGTAACAAATCGTGAAGTTAGTGGGTCTCACATACGTTATGGATATATTG
GTCTGAAATCAAGCCCTAGGGTCCAAAAAGACTAGAGTAtaaattttgag
gtatatatataatgtatttttcttttttttgttaatttaaaaCTTCCTCG
TAGTAACAGGGATAATAAATCATTTTACGTCAAAAATATCATGATATGTA
TTATGCTTTATCAGAAGGTGCTATACAGACCACAACCATCGCTTGAAAAG
ACTGCAATAAAATGATCAAATTCTAAATATTAGGGAAACTATATACTTTT
ATTTCGTCTgatcttgaaaattttgaaacgtctggaaaatttggcaaggt
gtagactagcaagcgtctgtctttccttggacacaggaacgcagGAATAG
TCcttataaagagttcttataaaaaatagaaattgccgcgggagagtggt
ttggaaagacatttgtattcagtgaacatatagacATAGAGCCCATTGCA
AGCTTaagctgcagcgaaatacaacgacgtggtttactagtctagcaAGT
GTGTAAAGCACGTAGGCCCGAATTAGCAAATGCCTTTAAATAGCATTTTT
GTCATAATATTCTAATAAAACATTTCCATAAAACAGAAATACAGTATTTT
TAGAATCCAAGATTATCCAGATTGATTCGAAATTCTTCTTATACTTGCTC
TTGATTTATACATTTGAGATCGTTTGAATCCGAAATGGAAAAAGTAATCC
CGATAAGAATCAATTGAACCCGATTCGGCTATCTGATCCATCATAATTTT
TTCTTGTAAGATTTCCCTGACTATAGGTGCCACCAGTGTGCTATGGCTCA
ACACAAAAGCATGGTCAATTCCCTTACCGTCCAATCGTATATcaatatcg
ggaaatcgggtTTTCATCTCTTCATAAAACGAAAGTGGAGTCCAAAGGTC
ACTTGCTCCATAATAAAAAGTCAGACGTTCACTAAATGTCTCGATGACGT
TTTCAAGATCACCGATTCGTCCGATTTTCGATAAATCTTTCGCGATTTGT
GACATGTTTCGCAAACCATTCGGAGTGACCAACGAATCGATTCCATTCGA
TAATGATTTCTTCGAATCGTTCGAAAACCGTCTTTGATGTGCAATGAAAT
CGattattgattttttaacaGTTTGTGGAAGAAGTTCAACCAGTTTTGTG
GTTCGAATAACAGGCCTTTGCAAGAATTGCGTTAGTGGCACCCACTTGCG
GCCACTTTGGGTCTCCATCGTACGCTCGAAGACTGGGAACAATAGAATAA
TTTGTTTTACCCTATCAGCCTCTTCACAGTCTAATCTTTCTAACATTTTC
AACGTTATATAAGAACCCAATGAGTGAGCAATGAGAATTATCTTCTTGTT
GGGGTCAATATGTTGACGAATGAAAGCTAATTTGTGTTCGATTTGTTCTT
CTAGTGTAAACACATGTTTATCGCTTGATTTGATGTTCGGGTTTAATTCC
TTATACACACGACGTACTAATGAGCTTTTTGATGGAATAAGATTGTGACC
TAAAACGAAAGTTTCAAACTtgacaaaggaaaattttaaacttgTAGTAA
AATATTGTTATAGAACATGAAAATTTAGTTTTAGAGAAGCTAATAATTAG
TTTGGCTTTCCTAAAGATACCACTTGTCAAGCCTTGAGAATTATATTGTT
ACACCTAGAATTAACCGACCGATAATAATAATTGACAAGCTAAGAATCTG
ATCATACCTGCATGTGAGATTCCAAATATTGGTAGTTTGCAATattgaaa
caaattttcaataaatcgATCATAAAATTCGATTGCTCCTGGATTGCCAG
GTATTACAACAATTACAGTGTCTGAGTTATCCTTGCAATCAGGAAGGATG
AATGAGATCCAGGTCATGACGTCATTGATGTTAAGTGCGCTGTGTTGGAT
TCCGTTATGTTTGTCGGAGCATAAAGAGCTGAATGACTGGGTTGAAGATA
CTGAGGCTAGATTCTGTTTACGTAATGAACCCAGGCTAGCATTTGAGGAT
CGCAGGCTACTAGCTCTGATTTTGGGCGGTAACCGATGAGATGGTATATT
ATCTGGGAGATTTGTTGTCGATAAGCTACGTGAGGCTTTGGTAACCAGAT
CTTCAGCATTTCCGAATCTTCGCTTGCTCAAAGGAGGAGTTAGCATAGAA
CGATGGTTGTTTCGCCGAATAAGACTTAAATGATGTGATCTTCCATTAGG
TGAGATTCCACGATCATTGTTGTTGCTTGTATCAGCAGCTATTCCATGAA
GTCTTTCAAATCTAGAACATGTCCTTTCTGTATCTATAGACTCTTGACTT
TTTCTGTTTCCAGATTCATATTTTGGTGATCTGCTGCGTTTCAAAAGTGA
GTAATCAGTGGCTAAATGTTCATCAATCGAACCAAGGGATACACTGATGG
AAGGTCTTGTAATTGTGATGGACATCTCtggttgttgttgtggttgttgc
TCAACATCGTCCTCAAATGGACTGTCTTTGAAGGAACTTCTCATCTTGAA
TTTCATATTTATGTAttaaatttttc

Run BLAST on NCBI

transcript from alignment at sc0000329:248520..259810+

Legend: exon

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00019516 ID=TCONS_00019516|Name=TCONS_00019516|organism=Clytia hemisphaerica|type=transcript|length=11291bp|location=Sequence derived from alignment at sc0000329:248520..259810+ (Clytia hemisphaerica)
ATCTGAAAGCATTTAACCAAAAGATCCACAGAAGAAATGAAGTTTGCAGG
ttttattttctgtttgttGGTTATTTGTGCTAACTCTGGTAAGTCTTTCA
TATTCGACTTTCGACAAGATACAATACTGTTTGCCTTTTTAATCGATTTT
CATACaactccttctcacagacccactgggaccccttcccactggagaaa
ttggccaaaatatcgtccccggtggaagaTTATACTACAATTTTTGTCGC
CACTGAATATAATCAaataaatcctcactgcaaaatattatactTTTTAT
cctttctgacttgaaaacaaaagaattgaaatccccatcgAGATTTCGta
cgttatttttatccccactggctagaaaattcctaccgggtctgtgagaa
gggggtgtttaaatataaaagttttttataagagcaaactatataagaac
ataagtcttcgatggccaaaatattaagaccAAGTTTAAgcacaaaaata
tttacaaaatggtcgactaagaacatttcaagaacatttttaggcttaga
tCTCAAAAGTCATGAACATCCGAAGGCATCTGTATACAAggatattctta
caaaaaaacgtgaaaaatctaaaaatgtgaaaaagctgAATTTTAGTTTA
AGTTTCTAAATTCTTtaagaaattttcaatcattatgGTGAGTGTTTAAT
GGGATTTTTTGGGCTTGTCAACAATTATAAATGATTATATTCGAATTCTT
GTATCTAGTATTGATGAAGGATGACCAAGACTTCAAGATTCTTGATGAAA
TGGAAAACGCCTTGTCTTCGAAAAGTAAGCTAGATGTGTcaactttttgc
taaataagTTTATTAGTTTATTGATATTTACAGCTTCCccggctggcaca
caacgtttatctaacgttatatggacgttgtgaacgttaaataaacgttg
aaacgacgttgtgtgccagctccTGGGATCAATTCTTCTAAAAAGCCAAC
GTTACTCTGGTAAATGATCCATCGGCAAAAACTATTCAACGGCaaaaaag
aaacaagttttTTAGCAAAAAGGCATATTTTTTGTCACCAAATATTCTTT
GCCGGCAAATTTTCTACAGATAAAACATGACACCAATtttcttttagatt
ccaaaactGTTATAGATACAACATTGAGTTTTGAAGACATTGATAAAATG
ATTTATGAGCAACTAACAAAAGGTAATTGAGGCTGCAACgaagaattttc
tttttcaattgatAAATTGATATCTTTATGACAGGAGGATGTAGTAGGGT
CGCAAGCcatgacgggtatgtgccgtcCGACTTTTGACCCTGGGACTCTT
ACTTAGTCAGGACTGAAAAGGAGGGGAAACAGCCGACTAATGTTATTAGA
CTCATTGTTgcaaattttttctaatttgacCTAATTTCGCTATTTCAGTT
GAAATTCGTCAGTTGggattttggcgccccttttgaaataaaatatctTT
GTAAAAGTTAGGCGAGCAAAGTGGAAATTTTTGggtatattttctctttt
tgcctgaaaactgCTAATTCTAAGGCGTGAATTATATTTAAAAGCGCCTT
TTTTCACCTCTTGTCTTTCGGTGCTCGCCccaaaaaattcgttttttaca
GTTgttgccaccacgctactgctaACGAGCGACACATACCCGTAACACAT
ATCTAGGAATTCCCTGGGTGTCCATTCCAGGTTTGCAAGGAAAATTAGTA
AAACCATAATGGCCATAACATCCTCAACTTTGTTTTAGAGAAAACTGACA
AACAAGAGGAAAGTTCAAAGGCAGAAGGGTTGAAAATGGTTCAACAAATC
CTAAATGATGAACTGCCGCAAAAGAGTAGGGagtttatatatatatttta
ctttaTCTTCTTGTTTATACAGAATTTCTATGCGACGTCCATTTCctaca
gcaaaaaaaacaaacaatggactgtgttcgaatcccaagcacttccaggc
agggtgttagggaaatatggtgataaactctctaccttcactcatatATC
ACTCTCTCGCCCTCTCAatccggctgataatcgaagtatcgattgacttc
aaatgaGCTtataaagctcaaattgcagatgtagaacgataaactcggcA
TACAAAAAAATCCTACTTAGAATTTAACTGTCGTTATTATTTGCCCTCCA
AGTCTTCATCATCTCCATTAATATGCTTCCTTACTTTCACATCGTTAGAC
AGCCAACAAGATGTTCAAGCTGTGAAGGAAAAGAGAAAGGCAGACGATAT
TGAATACATTGCCAAACTCTTCAAAGAAGTCTTCGATTCTCAAAAGAAAG
AGGATGGACAAGCTGTGGAAAAGAAAGAATATGGACAAGCTGTGGAAAAG
CAAGAAGATGGAGTAGAAACTGTGGGAAAGAAGGAAAAGGAGGACGAAGC
AGGtttcttatttttgttaatttgtaTTTTCTTCGTTTTCCCTTTCGTTC
ATAAATACGTTAATCCTTCGTTAACAATTTGCTTCTCCGCTACAACTTCT
CCTTCGATTTTATCAAGCTAGAAAAAGTAATACACAATAACACCCCTATG
TCAAAGATCCGTTGGAACCGACTGGAAAAATTGCCCAAAATATAgttccc
ggtggaaaaaaataccctaaataaataatataaataaaataccctgcccc
acttggaaatcgacttttttcatccccattcgaaattcaatgtaaaaaat
tgcattccaaaaccatccccactggatatcTTAAGCtcacaatagaattt
ctattttcattggGATTTCGGTATAAATCTTTATTCCCGATGTGTGAAAA
AGTTCCAACGGGCGTGCGAGACGAGGATGTACAATAGTTGTCTTTgtcat
aaaatttttttctccgtCGTAGCAGTGGAAGAGCCAGTCTGTGAAGACGA
ACTGTCAACACAAGATTGTTATGATTTGGCGTACAATGGAAGCTGCACAG
ATCCAAAGACCAGTAaacaaacattgaaagtttGTAAACGTTCCTGTCGT
GTATGTTGTAAGtagaaatctttttattttcgcGATGCGAGGGTacgaaa
tttgtgtttttttgtggaactaattttcgtggtaGACACCCATAAAACGC
GCAAAAATTAGTTAccgtgaaaattaattttgttttaaagtacTTTCTCT
GAATAATGACATGAGCTGCTCTTTTTTATTGGCCCAAAGCCGTTTAAATC
CGTTTATGCTATTATCCAGATGAAAATACAGTggaatctctataactcga
acaagcaaGGGGAATACATAATTGTTCAAGTCAAGAGATTTCGAATTATG
GAGGTTtaaaaggcattgttaactgaagcaagggaaattaaaatttgttc
gagttaaggactTTCAAACTACAGAGGACTCTTGCTAATTCGAACCtgta
ctattcgaatctttctataattcgaactaaaaaatTAGTCCCTCAGGCTT
AAGattagtataaaatactttcgataattcgaagaaaagtttttgtgtct
tttgaagatcgaattagagaaagtaaACTGTATATCTTGTTTTTTTCAGG
TGCGGACAATGAAAAATCACAGACGTGTaaacttttgaaaacattacgta
atccGATGAGTATATGCCAAATGGCGAACACTCATGAACGCCTGAGAATC
ACTTGCACCAAAACATGTCAATATTGTGCTAGTGAGTTTTCTTCTTCTTA
TCTCGAATCAAAGTCAATAGAAAATCTTATTATGAAGTCTAGGCAAAAGG
CTAAAATTGATTTCATCTTGATCACCTGATTAATATACTATATGCCATAT
TAatttgttaaccggttactttttcgaagcgggctacacggctttttgcg
caacgtgattggttctttttgcatgacgacgggcctacactgcaGAGCgc
gaaaaatcaatcaaagctgaaggaaacggttcaAAATACAATAATGACGG
TTTTTTTTCGAAGCTCGGTCGCTACTTGACTTCGGGCAATATTTCttagt
acagccctcactaaccggtcattattgtattaatataCTATTTCACTGCA
ACCACAACATTGGTTTTTTATATCGGCCTGAATTTCAGAAGGCTTCCAAA
TATCTTCAGTCTTAAATGCTCTGATGATGTTCTTAATACAAATTCGCTCA
TCAATTTTCTTCAATAGAGGCAATGACGGAGGTTCCATGCATTCGATCCA
AATATGGATGCTGTTGGGATGGCTCCATTGCGCAATTTCATATCGGTACC
ATGGAAGATGGTTGCCCAGGTACGTTGTCAAACAAAAGTGCGGATAGTAA
GATGACTTAACTAGCTATGCAGCAAATTTACGTattcattaaaagttttt
ttataagcatacaaaaattcgGAAACAGGATCGAAGATGCTTAGGTCGAG
GACTTGACAAAGGCTGAAAGTCGCTTAAAAGGACGCCTTTATCCCTAGCA
AAACTTCCGGAAATTCCGGAAATCCGTAAAATCCCAGCCAAAATCAGGAT
AATAtttttttcgtaggctcaagctAACGCaaatgcttaaatttttgcca
tattcTAGCCTAGATATTCTTTTGGTTGACATTTATTgacaatctcgtac
ccagagccacttgcaccaTTTTTTCGTGGACTTGCGATAAAAAAACCTTT
CGGCGAACACTATAagattcataaaaaatcaaacttagGGATTGACACTC
GAGTTTGGTTCTTTGATAGAGTCCCGTGAATCGGAAAACCTTGCGTGAAC
AGAAAtagcgtgaatttcgaaaaagggattgcgtgaatgcgtgaattcgG
AAAAAGAATTTGCGTGATTTCGTGATTTCGTGATTGGGTGAATTGAAGAT
CCACTTGGGTGATGGGCCTTGATTTTCTCTCTCGTGTTTCTGTTCgtata
ttttttaactttgttCATCACTCTCTCCTCCAAtacttttcatattttca
gCTTGCAGGGATTATGGAGGTGAGAAGTTTTGTAAGAGCTTTCAACCAGA
TTGTAAAGAAAGATACACTTTGAAGGGAGAACAAATCAGAGCACTTTGTC
CAATGACATGCCAAAGATGCGGAGGTAGGGTGGTTCTTTTGCTCtgtaaa
aaacctttgaaaagaCTGGAATCTAAATAAGCCTAAGATCACGTGGTTGT
CTCTAGTGATCTAGCCAAATGTAAAGGGATGATTAAAGGACAATTTACTG
TTGTTTTTATATGGACCAACTCAGCTGCTCGTTCATGTTTTTAGAATACC
CTACATATTCTAAAcacgcattttttataaaaaaaccaacatttttgaaa
ccttcggatgttcttaactttttcagcttttagcctaaaaatgttcttaa
catattcttaacgTGTTCCTATTATCTAGATCTatgccttatgttcttat
atagattatcttattaaaaaacgtgtaccagtCCTCTACGACTCTATACT
TTCCGTACGACATTACCCTGAACAaagaacccggggggggggggactaca
TTTGCAAGATAAAGGGTATGTCCGACCAAAGTTCGACAATCGACcctaga
gagactgaatttcaaaaaatttgtccattttttgacgtttttgccaccct
tagagagactttttccacaaaattccagccaaattttagtccaaatttat
CCCTTTACAGGGACTCAATTGCTCTTTAATGGNaaagacccggggggggg
ggtactacatTTGCAAGATAAAGGGTATGTCCGACCAAAGTTCGACAATC
GACcctagagagactgaatttcaaaaaatttgtccattttttgacgtttt
tgccacccttagagagactttttccacaaaattccagccaaattttagtc
caaatttatCCCTTTACAGGGACTCAATTGCTCTTTAATGGCTTTTGTAC
CtctttgagggactttcgagAGTGTGAAAAAGGAACCCTTATGACTCGCA
CATACCTGGCACCCATTAGACCAAACTACACCGCAAACTCACACattaat
tttgattatttcatgAACAGTTTTCAAGAAGTGTGCAGACAATCCTCGTT
TACAAGACACTTGTGGGTTGTTGAGAAACGATGGTGCTTGTGAATCCATG
TTCAACGCCATGAAATACAATTGCCCTAAAACTTGCAATATATGTCATAA
AGGTACGGTGATTGGGCCCTTCCAGAAAATGCTAGTACatggggagtgga
ggatatagtgtcctgGGAGGGTagtgaaaatctacaaaatttgccttgtc
cggccataaacttgctctgtttgggggtaattttgctctgtttgcttgtc
tgtttgagggtaattttgagtgtccaaggggtcaactaatgcttgtccgg
ggggttagacctgctgacCAGGGTTCAAAAGTATCCGGGgtatatttcca
aaaaatgttacatCTTCCaacccccccatattcaattttttctggaaaag
cctattTCCTGATTTTGACTACGATTCCTGTCTCGCCTATTTCTGATTAT
ATCTGTTCAGAGCATAGGTAGCCTCTTTTagttcaatacaccttttcgat
tgtagtcgcgcggtcaggcgcgtgccactttattagtgggcggttttagg
gtggtcaaacagacaaaaaaatggtcgcgcggcaattggcggctacggtt
gaaaaggtgtataaatAGCATATTCACAACATCCCAAATCAGTCGTTACA
CCTTTTACGTCAGGGTTTTCCTTATACAGTGTTTCCCGAAAAAAAGTGGA
GCAGAATTTATAAATCATGAATGTGATGATAAGATTTGAAACTTTAAACC
ATAagaacaccccttctcacagacccactgggaacccttcccacttgaaa
aattggccaaaatatcttcccagtggaaaattttactccaattttcgtcc
ccactgaaaataatataataaacGGATCcacactgcaaaatattattcta
tttttcccatccccatttattttctgacttgaaaacaaaagaatttaaat
acGTATGGGAATACCAATCCCCATCgggtttcagtccgttatttataacc
ccactggctgaaaatatCCTACCAGGTCTGCGAGAACGAAGTGTATAAGG
TTCATAAAATTCACAAAAGTTATAGAATGGATGatgaattgattgattga
tgtaTCTTATTCCCATAGCGACGATCGACTGCAAAGACACTCGTTTTGGA
TGttgtgaaaatggtaaaacCATTGCCAAAGATCCTTCAAAGTCGAACTG
TCCTGGTGAGTTTCGTTATcgaaactttgtttttttttaaagattatatc
TCAAGCGAGTCTTTTATCCCTTCTTAGTAAGTAAAAGTCgaaggcgaccc
gaaggctcctctttcgatagctatctacccgaggtaggggagggcgccac
tctttctccctggattactccacttacccttgatccgtaactttaattgc
tgagcatcaagcagagaggcatcaagtaccaatTTGAGAGTCTTTGATAT
GACCCGGCTGGgagttgaacccacaaccttgcaaaccgtagccggatgct
ctaaaACTGCACTACGGTCCCTTCTTGAATTTTTCCTTGATACCTCGGAT
TTCAAATAGTCATTAGCTGACTTGATTAACACTTGGGAAATTTTATAAGA
TATTCTTCTTGATATAAAAAGGAGGCGCGTCTCTTGTGCTGACAAAGCAT
AATATAGAatagattttttcaaatgttgtGCTCGCGTGGCGCCGAAAGGG
GATAAGAAGGTGTGCCGTGGTTACAAAGGAGACCCTACCTTGGTCATGTC
ACATAAtacttgaccaatcagaagcttcgcgggttttcgaaaacaataga
aacaatattttttttgtgatattccctttttttgcttggaaaagcgaTTA
AGGCAGGCCATCTGACCCTTCAAAATCTGTGGGATAAGgctgttctttct
tttgtttaaaattgtTGTATGTATTATAGCGAATGGTATAAGATACGTTC
ACTGGTATTCTTTAAAGATATGTTCCCAGCTCTggaacacaacgttgttt
caacgtttatctaatgttcataacgtccatataacgtcaggggaacgttg
aaacaacgttatgtgccaacTGGGTTCACTGCACATTAGCCATGTTGGAA
TTacatttataatatttttccttTATAGAATGTCACGATGACATTACGTC
ACCCGTTGCTAAGCATTGCCAACGTTTGGTCGCCCACCGTGTTTGTAAAA
CACACCCAGCGTTCATGAGGAAATACTGTGGTGGTTCGTGTAAATTCTGC
ACCAAATGAAAATGGAGTATTATCATGTTGGCGGCGTGAGAATAGTgcct
tatttttttgaatattttgaataaaGATTCTTTGCTGTATAGAACACACT
ATGATAGAGAGCTTTAGTTTCTGATTACGCGCTTTTTGTTTATAAGAGTG
TAAACAGCCCGAAGGGCTAGGagagaatctttaacctttctcaagcaaga
aaaagtgaagccttttcgagtggtatatttttttaaatctagccaGAAAT
TCTATTTTCAATGTGTGTTATACATATTAAATAATTTAGATTCAgtttgg
atcctaacctaaaaatgttattaagaatattttatacCCAAGATGGAATG
GAAAAACACCACTCGTGTAACAAATCGTGAAGTTAGTGGGTCTCACATAC
GTTATGGATATATTGGTCTGAAATCAAGCCCTAGGGTCCAAAAAGACTAG
AGTAtaaattttgaggtatatatataatgtatttttcttttttttgttaa
tttaaaaCTTCCTCGTAGTAACAGGGATAATAAATCATTTTACGTCAAAA
ATATCATGATATGTATTATGCTTTATCAGAAGGTGCTATACAGACCACAA
CCATCGCTTGAAAAGACTGCAATAAAATGATCAAATTCTAAATATTAGGG
AAACTATATACTTTTATTTCGTCTgatcttgaaaattttgaaacgtctgg
aaaatttggcaaggtgtagactagcaagcgtctgtctttccttggacaca
ggaacgcagGAATAGTCcttataaagagttcttataaaaaatagaaattg
ccgcgggagagtggtttggaaagacatttgtattcagtgaacatatagac
ATAGAGCCCATTGCAAGCTTaagctgcagcgaaatacaacgacgtggttt
actagtctagcaAGTGTGTAAAGCACGTAGGCCCGAATTAGCAAATGCCT
TTAAATAGCATTTTTGTCATAATATTCTAATAAAACATTTCCATAAAACA
GAAATACAGTATTTTTAGAATCCAAGATTATCCAGATTGATTCGAAATTC
TTCTTATACTTGCTCTTGATTTATACATTTGAGATCGTTTGAATCCGAAA
TGGAAAAAGTAATCCCGATAAGAATCAATTGAACCCGATTCGGCTATCTG
ATCCATCATAATTTTTTCTTGTAAGATTTCCCTGACTATAGGTGCCACCA
GTGTGCTATGGCTCAACACAAAAGCATGGTCAATTCCCTTACCGTCCAAT
CGTATATcaatatcgggaaatcgggtTTTCATCTCTTCATAAAACGAAAG
TGGAGTCCAAAGGTCACTTGCTCCATAATAAAAAGTCAGACGTTCACTAA
ATGTCTCGATGACGTTTTCAAGATCACCGATTCGTCCGATTTTCGATAAA
TCTTTCGCGATTTGTGACATGTTTCGCAAACCATTCGGAGTGACCAACGA
ATCGATTCCATTCGATAATGATTTCTTCGAATCGTTCGAAAACCGTCTTT
GATGTGCAATGAAATCGattattgattttttaacaGTTTGTGGAAGAAGT
TCAACCAGTTTTGTGGTTCGAATAACAGGCCTTTGCAAGAATTGCGTTAG
TGGCACCCACTTGCGGCCACTTTGGGTCTCCATCGTACGCTCGAAGACTG
GGAACAATAGAATAATTTGTTTTACCCTATCAGCCTCTTCACAGTCTAAT
CTTTCTAACATTTTCAACGTTATATAAGAACCCAATGAGTGAGCAATGAG
AATTATCTTCTTGTTGGGGTCAATATGTTGACGAATGAAAGCTAATTTGT
GTTCGATTTGTTCTTCTAGTGTAAACACATGTTTATCGCTTGATTTGATG
TTCGGGTTTAATTCCTTATACACACGACGTACTAATGAGCTTTTTGATGG
AATAAGATTGTGACCTAAAACGAAAGTTTCAAACTtgacaaaggaaaatt
ttaaacttgTAGTAAAATATTGTTATAGAACATGAAAATTTAGTTTTAGA
GAAGCTAATAATTAGTTTGGCTTTCCTAAAGATACCACTTGTCAAGCCTT
GAGAATTATATTGTTACACCTAGAATTAACCGACCGATAATAATAATTGA
CAAGCTAAGAATCTGATCATACCTGCATGTGAGATTCCAAATATTGGTAG
TTTGCAATattgaaacaaattttcaataaatcgATCATAAAATTCGATTG
CTCCTGGATTGCCAGGTATTACAACAATTACAGTGTCTGAGTTATCCTTG
CAATCAGGAAGGATGAATGAGATCCAGGTCATGACGTCATTGATGTTAAG
TGCGCTGTGTTGGATTCCGTTATGTTTGTCGGAGCATAAAGAGCTGAATG
ACTGGGTTGAAGATACTGAGGCTAGATTCTGTTTACGTAATGAACCCAGG
CTAGCATTTGAGGATCGCAGGCTACTAGCTCTGATTTTGGGCGGTAACCG
ATGAGATGGTATATTATCTGGGAGATTTGTTGTCGATAAGCTACGTGAGG
CTTTGGTAACCAGATCTTCAGCATTTCCGAATCTTCGCTTGCTCAAAGGA
GGAGTTAGCATAGAACGATGGTTGTTTCGCCGAATAAGACTTAAATGATG
TGATCTTCCATTAGGTGAGATTCCACGATCATTGTTGTTGCTTGTATCAG
CAGCTATTCCATGAAGTCTTTCAAATCTAGAACATGTCCTTTCTGTATCT
ATAGACTCTTGACTTTTTCTGTTTCCAGATTCATATTTTGGTGATCTGCT
GCGTTTCAAAAGTGAGTAATCAGTGGCTAAATGTTCATCAATCGAACCAA
GGGATACACTGATGGAAGGTCTTGTAATTGTGATGGACATCTCtggttgt
tgttgtggttgttgcTCAACATCGTCCTCAAATGGACTGTCTTTGAAGGA
ACTTCTCATCTTGAATTTCATATTTATGTAttaaatttttc

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_010970	XLOC_010970	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
sc0000329	supercontig	sc0000329:248520..259810 +

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.00295934	0.000943343	0.00349215	0.00307937	0	0.0043606	0.00928095	0.000563943	0.00371899	0.00238506	0.000679849	0.736711	0.0222882	0.0965519	0.0782815	0	3.97949e-10	0.309288	0.644979	0	5.13969e-07	4.16572e-08	1.04844e-06	0	0	1.57659e-05	4.16749e-07	0.00304123	0.0124832

Blast

[Close]

BLAST of TCONS_00019516 vs. Swiss-Prot (Human)
Match: LDAH (Lipid droplet-associated hydrolase OS=Homo sapiens GN=LDAH PE=1 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 3.995e-27
Identity = 77/228 (33.77%), Postives = 125/228 (54.82%), Query Frame = -1

Query: 2495 KHVFTLEEQIEHKLAFIRQHIDPNKKIILIAHSLGSYITLKMLERLDCEEADRVKQIILLFPVFERTMETQSGRKWVPLTQFLQRPVIRTTK--LVELLPQTVKKSIIDFIAHQRRFSNDSKKSLSNGIDSLVTPNGLRNMSQI-AKDLSKIGRIGDLENVIETFSERLTFYYGASDLWTPLSFYEEMKTRFPDIDIRLDGKGIDHAFVLSHSTLVAPIVREILQEKI 3169
            K ++ L  QIEHKLAF+R H+  + K++LI HS+GSY TL+ML+R+       V +  LLFP  ER  E+ +GR   PL  +  R V+  T   L++  P+T+K  +I          N+          +++ P  L N + +  +++ ++ +  D E + E    +LTFYYG  D W P  +YE++K  FP+ DIRL  K I HAF+   +  +A ++ + L++ +
Sbjct:  107 KDIYGLNGQIEHKLAFLRTHVPKDMKLVLIGHSIGSYFTLQMLKRV---PELPVIRAFLLFPTIERMSESPNGRIATPLLCWF-RYVLYVTGYLLLKPCPETIKSLLIRRGLQVMNLENEFSPL------NILEPFCLANAAYLGGQEMMEVVKRDD-ETIKEHLC-KLTFYYGTIDPWCPKEYYEDIKKDFPEGDIRLCEKNIPHAFITHFNQEMADMIADSLKDDL 322

The following BLAST results are available for this feature:

BLAST of TCONS_00019516 vs. Swiss-Prot (Human)

BLAST of TCONS_00019516 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
LDAH	3.995e-27	33.77	Lipid droplet-associated hydrolase OS=Homo sapiens...	[more]

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TCONS_00019516 (transcript) - C. hemisphaerica