TCONS_00019503 (transcript) - C. hemisphaerica

Overview
NameTCONS_00019503
Unique NameTCONS_00019503
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length418

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00019503 ID=TCONS_00019503|Name=TCONS_00019503|organism=Clytia hemisphaerica|type=transcript|length=418bp
gtatttttatgtAGTTAAAAtcttaggaaaattgaaaaaattaaaaatct
atttttttaatgatttcggtcttaaaatctttctttttgaaaatatatac
aattttcagcaattttctactttttctctGTTGTGTTTGTTTTACAACAT
TTTATAATTGTCAATCaattaaattttgtagttttagTTTGTATTTATCG
ATTTTAGTTTtcagttttaaatttttagtaCTTGTCCTTTTTTTCTTGGG
TTAGGGCTGAAGAAACATAACATTAATGTTAAAATTTCCATACAAGACAT
CTTTTGAATTGATGGGAACTTACTTAATattctttttaataagaacagat
atattttttgttgaggctcAGCTGCCCTTATTTTCCTTGCAATTTGAGCC
TCAAGTTGTTCTTATCAT
Run BLAST on NCBI

transcript from alignment at sc0000328:310064..310481

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00019503 ID=TCONS_00019503|Name=TCONS_00019503|organism=Clytia hemisphaerica|type=transcript|length=418bp|location=Sequence derived from alignment at sc0000328:310064..310481 (Clytia hemisphaerica)
ATGATAAGAACAACTTGAGGCTCAAATTGCAAGGAAAATAAGGGCAGCTg
agcctcaacaaaaaatatatctgttcttattaaaaagaatATTAAGTAAG
TTCCCATCAATTCAAAAGATGTCTTGTATGGAAATTTTAACATTAATGTT
ATGTTTCTTCAGCCCTAACCCAAGAAAAAAAGGACAAGtactaaaaattt
aaaactgaAAACTAAAATCGATAAATACAAActaaaactacaaaatttaa
ttGATTGACAATTATAAAATGTTGTAAAACAAACACAACagagaaaaagt
agaaaattgctgaaaattgtatatattttcaaaaagaaagattttaagac
cgaaatcattaaaaaaatagatttttaattttttcaattttcctaagaTT
TTAACTacataaaaatac
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_010963XLOC_010963Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00019503-exon-sc0000328-1491911889:310064..310481TCONS_00019503-exon-sc0000328-1491911889:310064..310481Clytia hemisphaericaexon
TCONS_00019503-exon-sc0000328-1510915933:310064..310481TCONS_00019503-exon-sc0000328-1510915933:310064..310481Clytia hemisphaericaexon
TCONS_00019503-exon-sc0000328-1575043694:310064..310481TCONS_00019503-exon-sc0000328-1575043694:310064..310481Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000328supercontigsc0000328:310064..310481 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0.686752	0	0.872961	0.408628	3.00395	1.06311	0.343959	0.90442	0.338686	1.40692	1.63862	0.517204	0.892015	1.0449	0.721792	0	0.164124	0.240162	0.389264	0.353897	0.364506	0	1.1638	0.248409	0.753637	0.575878
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00019503 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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