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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00019494 ID=TCONS_00019494|Name=TCONS_00019494|organism=Clytia hemisphaerica|type=transcript|length=1282bp
CtcgaatatttctctaattcgagaTATTTTCTCCGTCCCGAAATAAATCG
AATAAAACGTGTCAACTATATTTCCTTCTTGGGGTCGTAAGAGTGACATG
GCCAAATTAAGATTCCTAcccaaaaagattaaaaataccACAAAATATTA
CCTGATTAAAAGAActaaaaatctaataaaagttTGCGGATGCACATCAG
TGCGTATTTATACAATGTCAGATTGTCGATAGCCTGTATGTAACATAACC
ATTGAATAGAAGTTACTAATTTCAggacacaaaaattcaaattgctTGTT
TATTGATGGTTgctattgttgttgttgttggggtTGTGATGGTTGTTGTT
GGGGTTGTGTATATAACCACCCTTTCCTAATTCATTCAACCAATATTGAT
AAAGATCGTAATAATCGGAGCCCAATGTTTCGTAACGGCTCCTCGCTATC
ccattaattttattttggaGATTTTCAAGGCCTCGATCATCAATTAAGAT
CTGCTCTATAACACGTGAATCTCGGTATGATAAGTTCTCAAAAATCTCCC
TCTGGTGAGGACCAGTTAGGTGCTGACCAGCTCTGATTTGTAAATCACGT
TGTTCGGGTTATCGTTGTTGGGGTTGTGATGGGTGTTGTTTGGGTTGTGA
TGGTTGTTGTTGGGGTTGTGATAGTCGTTGTTGGGGTTGTGATGGGTATT
GTTTGGGTTTTGATGGTTGTTGTTGGAGTTGTGACGGTTGTTGTTGGGGT
TGTTATGGTTGCTGTTGGGGTTGTGATAGTCGTTGTTGGGGTTGTGATGG
GTATTGTTTGGGTTTTGATGGTTGTTGTTGGAGTTGTGATGGTTGTTGTT
GGAGTTGTGATGGTTGTTGTTGGGGTTGTGATGGTTGTTGTTGGAGTTGT
GATGGTTGTTGTTGGGGTTGTGATGGTTGTTGTTGGAGTTGTGATGGTTG
TTGTTGGGGTTGtgatggttgttgttgttggagtTGTGATGGTTGTTGTT
GGAGTTGTGATGGTTGCTGTTGTTGGAGTTGTGATGGTTGTTGTTGGAGT
TGTGATGGTTGTTGTTGGGGTTGtgatggttgttgttgttggagttgtga
tggttgttgttgttggagtTGTGATGGTtgttgtgtgtgtgtgtgtataT
CGGTGGACTTGTGTCTTCTCCAAGGAGTTAGCTCCCCTAGAGGAGCGTGC
TCCTCGCCAGAGCGATCGACTTGGACGGGCATTTGGTTAGTAATGCCAAC
CCTTCCCTCTGTTCCTCTTGGTTGAATATTTC Run BLAST on NCBI protein sequence of TCONS_00019494-protein >TCONS_00019494-protein ID=TCONS_00019494-protein|Name=TCONS_00019494-protein|organism=Clytia hemisphaerica|type=polypeptide|length=175bp
NIQPRGTEGRVGITNQMPVQVDRSGEEHAPLGELTPWRRHKSTDIHTHTQ
QPSQLQQQQPSQLQQQQPSQPQQQPSQLQQQPSQLQQQQPSQLQQQPSQL
QQQQPSQPQQQPSQLQQQPSQPQQQPSQLQQQPSQPQQQPSQLQQQPSQL
QQQPSKPKQYPSQPQQRLSQPQQQP Run BLAST on NCBI transcript from alignment at sc0000328:77540..78821 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00019494 ID=TCONS_00019494|Name=TCONS_00019494|organism=Clytia hemisphaerica|type=transcript|length=1282bp|location=Sequence derived from alignment at sc0000328:77540..78821 (Clytia hemisphaerica)
GAAATATTCAACCAAGAGGAACAGAGGGAAGGGTTGGCATTACTAACCAA
ATGCCCGTCCAAGTCGATCGCTCTGGCGAGGAGCACGCTCCTCTAGGGGA
GCTAACTCCTTGGAGAAGACACAAGTCCACCGAtatacacacacacacac
aacaACCATCACAactccaacaacaacaaccatcacaactccaacaacaa
caaccatcaCAACCCCAACAACAACCATCACAACTCCAACAACAACCATC
ACAACTCCAACAACAGCAACCATCACAACTCCAACAACAACCATCACAac
tccaacaacaacaaccatcaCAACCCCAACAACAACCATCACAACTCCAA
CAACAACCATCACAACCCCAACAACAACCATCACAACTCCAACAACAACC
ATCACAACCCCAACAACAACCATCACAACTCCAACAACAACCATCACAAC
TCCAACAACAACCATCAAAACCCAAACAATACCCATCACAACCCCAACAA
CGACTATCACAACCCCAACAGCAACCATAACAACCCCAACAACAACCGTC
ACAACTCCAACAACAACCATCAAAACCCAAACAATACCCATCACAACCCC
AACAACGACTATCACAACCCCAACAACAACCATCACAACCCAAACAACAC
CCATCACAACCCCAACAACGATAACCCGAACAACGTGATTTACAAATCAG
AGCTGGTCAGCACCTAACTGGTCCTCACCAGAGGGAGATTTTTGAGAACT
TATCATACCGAGATTCACGTGTTATAGAGCAGATCTTAATTGATGATCGA
GGCCTTGAAAATCtccaaaataaaattaatggGATAGCGAGGAGCCGTTA
CGAAACATTGGGCTCCGATTATTACGATCTTTATCAATATTGGTTGAATG
AATTAGGAAAGGGTGGTTATATACACAACCCCAACAACAACCATCACAac
cccaacaacaacaacaatagcAACCATCAATAAACAagcaatttgaattt
ttgtgtccTGAAATTAGTAACTTCTATTCAATGGTTATGTTACATACAGG
CTATCGACAATCTGACATTGTATAAATACGCACTGATGTGCATCCGCAaa
cttttattagatttttagTTCTTTTAATCAGGTAATATTTTGTggtattt
ttaatctttttgggTAGGAATCTTAATTTGGCCATGTCACTCTTACGACC
CCAAGAAGGAAATATAGTTGACACGTTTTATTCGATTTATTTCGGGACGG
AGAAAATAtctcgaattagagaaatattcgaG Coding sequence (CDS) from alignment at sc0000328:77540..78821 >TCONS_00019494 ID=TCONS_00019494|Name=TCONS_00019494|organism=Clytia hemisphaerica|type=CDS|length=528bp|location=Sequence derived from alignment at sc0000328:77540..78821 (Clytia hemisphaerica)
AATATTCAACCAAGAGGAACAGAGGGAAGGGTTGGCATTACTAACCAAAT
GCCCGTCCAAGTCGATCGCTCTGGCGAGGAGCACGCTCCTCTAGGGGAGC
TAACTCCTTGGAGAAGACACAAGTCCACCGAtatacacacacacacacaa
caACCATCACAactccaacaacaacaaccatcacaactccaacaacaaca
accatcaCAACCCCAACAACAACCATCACAACTCCAACAACAACCATCAC
AACTCCAACAACAGCAACCATCACAACTCCAACAACAACCATCACAactc
caacaacaacaaccatcaCAACCCCAACAACAACCATCACAACTCCAACA
ACAACCATCACAACCCCAACAACAACCATCACAACTCCAACAACAACCAT
CACAACCCCAACAACAACCATCACAACTCCAACAACAACCATCACAACTC
CAACAACAACCATCAAAACCCAAACAATACCCATCACAACCCCAACAACG
ACTATCACAACCCCAACAGCAACCATAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00019494-exon-sc0000328-1491911889:77540..78821 | TCONS_00019494-exon-sc0000328-1491911889:77540..78821 | Clytia hemisphaerica | exon |
| TCONS_00019494-exon-sc0000328-1510915933:77540..78821 | TCONS_00019494-exon-sc0000328-1510915933:77540..78821 | Clytia hemisphaerica | exon |
| TCONS_00019494-exon-sc0000328-1575043694:77540..78821 | TCONS_00019494-exon-sc0000328-1575043694:77540..78821 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000328 | supercontig | sc0000328:77540..78821 . |
Blast
The following BLAST results are available for this feature:
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