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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00019479 ID=TCONS_00019479|Name=TCONS_00019479|organism=Clytia hemisphaerica|type=transcript|length=1711bp
TGCTTGTAAGCTAACATTTGCTTGTGATCATGATACAAGAAGTATCGAAA
CGTCAAggatgaacaaaattttgtttttcgtctttacttttttttttggt
atactTGTACAAAACCTTACAAAAATGATCGTAACAAGACTGATTAGGGA
AACTGTTAAGAAAGTAGGGTACTTTCTATTTTGGCAATGAGCCTTCTTGC
AAAGAAATCTCTGTATTCTTCAGGAAGTGTTGATAAACTTTTCAATGCTT
TCTCAACACCTTGTATTGCTCGTTGCGCAGGCACCAAATCTTTATTACCA
TAAACATCCTTTTGATCATAAATTTCATACGGTAAATGTTTCCAAAACAC
ATTAACAGAGATGGCAAAGTCCAATGCTGTCACATTATGAAACCATAATG
CTGGTATAAAAAGAACATCGCCAGGCTCTAGTAAGCATTCATAACGTTCA
ACATCTTTAAACTTTGGAAATTCTCCAAAATCAGGATTGTCAATATTCAT
AACTTGCGATTTATCACCAACAAGGTACAAATTCAATGCATCAGTAGGAG
GGAAAAGCACTACTTTTTTATGTCCTGAAATATGCACCAATACATTGTCC
ATTATATCATAGTGTGTCCAAAGTTGCACGCCAGGGGAGCTGATacgaaa
aacactggaaaagaAGTTTTCCTCATCAAAAACACTTGgaattttaaaat
cttcagCTAAACTTGGAAATTGTTTATGAATGTCAGCGATATCCTTTCTT
GGATCCTCACCCAGTGATCTCAAGTAATATTTCTCGTTAGATGTCAGAAA
ATAATCATCATGCTCGTTGTTAGACACTTTCCTTAAAAACTCATCAAAGC
CAAGTGTCTTGTATTGAAAATTCTTCTTGATAAAATCCATTTTAGGAACA
GGTGAAACGTGTATTTTCACAGGCATTTTTCCAAAGACTTGACTTAGATA
TTCAACATTCCATTTCTCTTTGCATTCTCCGATATCTAGGCCTCTTAGGA
CAACAGGTTTTCTTGCTTTAtaatgtgattttttgaaacTATCACAACTG
TCATTCAAGATTTCCACTGGAATTGTATTTTGTTGATTTGACTTCATCTC
AACTTACCGTTTTGTACTTTTAATTTGAACAATTAACTGAGTGTCATAAA
CATTCATTAAAATGATATAACTTAGGATAAAATGCGCGTCTTGTGTTATT
TTTCTATCAAGTTGCTACAAAAGAAGTCATGAGGAAAACTTTAAAGAATT
TTGGAAGTAATTAAGTACTGCAAACGCAGTCACAGGACCTTGGTCTCTGC
AACAGAGACCATGACAAATGAGATGGCTGacgctgattggagaattaAAG
AAAACCTACCAATGgtacaaaaatttattttttacaactttGAAACTGTT
TGAAAGCCTGCCAACTTTTATCGATTGCAGGAATTTTCCAAATACTTTTT
ATGTTCCTATACAGGTCAAAACACTCAATCCAAGATTGAGTTTTAGAAAC
TCAAACAAATATTTTCTagcaaaatttgacttttttgatGTTTACAAGCA
AAAATAACTGATTTATGTTCatatttattattttggaaGCTTTACCGTCT
GAATGTGCCACCAGGGGGCAGGAAGCAACCGAGGACCCCCCCAGCTTTAA
GAATGAACAGCTTCGCTGAGCAGATTAGCAAATTGAAGGGAGTCGAAAGA
TGAGGGAtttc Run BLAST on NCBI transcript from alignment at sc0000328:315247..317219+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00019479 ID=TCONS_00019479|Name=TCONS_00019479|organism=Clytia hemisphaerica|type=transcript|length=1973bp|location=Sequence derived from alignment at sc0000328:315247..317219+ (Clytia hemisphaerica)
TGCTTGTAAGCTAACATTTGCTTGTGATCATGATACAAGAAGTATCGAAA
CGTCAAggatgaacaaaattttgtttttcgtctttacttttttttttggt
atactTGTACAAAACCTTACAAAAATGATCGTAACAAGACTGATTAGGGA
AACTGTTAAGAAAGTAGGGTACTTTCTATTTTGGCAATGAGCCTTCTTGC
AAAGAAATCTCTGTATTCTTCAGGAAGTGTTGATAAACTTTTCAATGCTT
TCTCAACACCTTGTATTGCTCGTTGCGCAGGCACCAAATCTTTATTACCA
TAAACATCCTTTTGATCATAAATTTCATACGGTAAATGTTTCCAAAACAC
ATTAACAGAGATGGCAAAGTCCAATGCTGTCACATTATGAAACCATAATG
CTGGTATAAAAAGAACATCGCCAGGCTCTAGTAAGCATTCATAACGTTCA
ACATCTTTAAACTTTGGAAATTCTCCAAAATCAGGATTGTCAATATTCAT
AACTTGCGATTTATCACCAACAAGGTACAAATTCAATGCATCAGTAGGAG
GGAAAAGCACTACTTTTTTATGTCCTGAAATATGCACCAATACATTGTCC
ATTATATCATAGTGTGTCCAAAGTTGCACGCCAGGGGAGCTGATacgaaa
aacactggaaaagaAGTTTTCCTCATCAAAAACACTTGgaattttaaaat
cttcagCTAAACTTGGAAATTGTTTATGAATGTCAGCGATATCCTTTCTT
GGATCCTCACCCAGTGATCTCAAGTAATATTTCTCGTTAGATGTCAGAAA
ATAATCATCATGCTCGTTGTTAGACACTTTCCTTAAAAACTCATCAAAGC
CAAGTGTCTTGTATTGAAAATTCTTCTTGATAAAATCCATTTTAGGAACA
GGTGAAACGTGTATTTTCACAGGCATTTTTCCAAAGACTTGACTTAGATA
TTCAACATTCCATTTCTCTTTGCATTCTCCGATATCTAGGCCTCTTAGGA
CAACAGGTTTTCTTGCTTTAtaatgtgattttttgaaacTATCACAACTG
TCATTCAAGATTTCCACTGGAATTGTATTTTGTTGATTTGACTTCATCTC
AACTTACCGTTTTGTACTTTTAATTTGAACAATTAACTGAGTGTCATAAA
CATTCATTAAAATGATATAACTTAGGATAAAATGCGCGTCTTGTGTTATT
TTTCTATCAAGTTGCTACAAAAGAAGTCATGAGGAAAACTTTAAAGAATT
TTGGAAGTAATTAAGTACTGCAAACGCAGTCACAGGTAAAcattagttgc
tgagcatcaagcaaagAGGCATCATGTACCATtttggaatctttggtatg
agaAGCTTGGGGTCGAGCCCACAATCCTTGAGAAACATAGCATGTTTCTA
TAAGATTTTTAAGGCTCTGTCACTTTTTGAGCAcggccattttgcatcat
tgcgcaaaaaaattagaaaaaaataatgagcctaACCCAagaaaagctag
taacagaCAGACAAACAGACAAATGAGcattgatttatttttattagGAC
CTTGGTCTCTGCAACAGAGACCATGACAAATGAGATGGCTGacgctgatt
ggagaattaAAGAAAACCTACCAATGgtacaaaaatttattttttacaac
tttGAAACTGTTTGAAAGCCTGCCAACTTTTATCGATTGCAGGAATTTTC
CAAATACTTTTTATGTTCCTATACAGGTCAAAACACTCAATCCAAGATTG
AGTTTTAGAAACTCAAACAAATATTTTCTagcaaaatttgacttttttga
tGTTTACAAGCAAAAATAACTGATTTATGTTCatatttattattttggaa
GCTTTACCGTCTGAATGTGCCACCAGGGGGCAGGAAGCAACCGAGGACCC
CCCCAGCTTTAAGAATGAACAGCTTCGCTGAGCAGATTAGCAAATTGAAG
GGAGTCGAAAGATGAGGGAtttc
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00019479-exon-sc0000328-1491911889:315247..316531 | TCONS_00019479-exon-sc0000328-1491911889:315247..316531 | Clytia hemisphaerica | exon |
| TCONS_00019479-exon-sc0000328-1510915933:315247..316531 | TCONS_00019479-exon-sc0000328-1510915933:315247..316531 | Clytia hemisphaerica | exon |
| TCONS_00019479-exon-sc0000328-1575043694:315247..316531 | TCONS_00019479-exon-sc0000328-1575043694:315247..316531 | Clytia hemisphaerica | exon |
| TCONS_00019479-exon-sc0000328-1491911889:316794..317219 | TCONS_00019479-exon-sc0000328-1491911889:316794..317219 | Clytia hemisphaerica | exon |
| TCONS_00019479-exon-sc0000328-1510915933:316794..317219 | TCONS_00019479-exon-sc0000328-1510915933:316794..317219 | Clytia hemisphaerica | exon |
| TCONS_00019479-exon-sc0000328-1575043694:316794..317219 | TCONS_00019479-exon-sc0000328-1575043694:316794..317219 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000328 | supercontig | sc0000328:315247..317219 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
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| IPR003347 | JmjC_dom |
Blast
BLAST of TCONS_00019479 vs. Swiss-Prot (Human)
Match: TYW5 (tRNA wybutosine-synthesizing protein 5 OS=Homo sapiens GN=TYW5 PE=1 SV=1) HSP 1 Score: 386.341 bits (991), Expect = 8.404e-130 Identity = 180/306 (58.82%), Postives = 227/306 (74.18%), Query Frame = -3
Query: 159 IPVEILND-SCDSFKKSHYKARKPVVLRGLDIGECKEKWNVEYLSQVFGKMPVKIHVSPVPKMDFIKKNFQYKTLGFDEFLRKVSNNEHDDYFLTSNEKYYLRSLGEDPRKDIADIHKQFPSLAEDFKIPSVFDEENFFSSVFRISSPGVQLWTHYDIMDNVLVHISGHKKVVLFPPTDALNLYLVGDKSQVMNIDNPDFGEFPKFKDVERYECLLEPGDVLFIPALWFHNVTALDFAISVNVFWKHLPYEIYDQKDVYGNKDLVPAQRAIQGVEKALKSLSTLPEEYRDFFARRLIAKIESTLLS 1073
+PV L S + F + Y RKP+VL G+D+G C KW V+YLSQV GK VKIHV+ V +MDFI KNF Y+TL FD+ +++ + +H ++F++ +EKYYLRSLGEDPRKD+ADI KQFP L D K P F EE FFSSVFRISSPG+QLWTHYD+MDN+L+ ++G K+VVLF P DA LYL G KS+V+NIDNPD ++P F RYEC LE GDVLFIPALWFHNV + +F + VN+FWKHLP E YD+ D YGNKD A RA Q +++ALK+L+ LPEEYRDF+ARR++ I+ S
Sbjct: 6 LPVPRLEGVSREQFMQHLYPQRKPLVLEGIDLGPCTSKWTVDYLSQVGGKKEVKIHVAAVAQMDFISKNFVYRTLPFDQLVQRAAEEKHKEFFVSEDEKYYLRSLGEDPRKDVADIRKQFPLLKGDIKFPEFFKEEQFFSSVFRISSPGLQLWTHYDVMDNLLIQVTGKKRVVLFSPRDAQYLYLKGTKSEVLNIDNPDLAKYPLFSKARRYECSLEAGDVLFIPALWFHNVISEEFGVGVNIFWKHLPSECYDKTDTYGNKDPTAASRAAQILDRALKTLAELPEEYRDFYARRMVLHIQDKAYS 311
The following BLAST results are available for this feature:
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