TCONS_00019478 (transcript) - C. hemisphaerica

Overview
NameTCONS_00019478
Unique NameTCONS_00019478
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1546

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00019478 ID=TCONS_00019478|Name=TCONS_00019478|organism=Clytia hemisphaerica|type=transcript|length=1546bp
TGCTTGTAAGCTAACATTTGCTTGTGATCATGATACAAGAAGTATCGAAA
CGTCAAggatgaacaaaattttgtttttcgtctttacttttttttttggt
atactTGTACAAAACCTTACAAAAATGATCGTAACAAGACTGATTAGGGA
AACTGTTAAGAAAGTAGGGTACTTTCTATTTTGGCAATGAGCCTTCTTGC
AAAGAAATCTCTGTATTCTTCAGGAAGTGTTGATAAACTTTTCAATGCTT
TCTCAACACCTTGTATTGCTCGTTGCGCAGGCACCAAATCTTTATTACCA
TAAACATCCTTTTGATCATAAATTTCATACGGTAAATGTTTCCAAAACAC
ATTAACAGAGATGGCAAAGTCCAATGCTGTCACATTATGAAACCATAATG
CTGGTATAAAAAGAACATCGCCAGGCTCTAGTAAGCATTCATAACGTTCA
ACATCTTTAAACTTTGGAAATTCTCCAAAATCAGGATTGTCAATATTCAT
AACTTGCGATTTATCACCAACAAGGTACAAATTCAATGCATCAGTAGGAG
GGAAAAGCACTACTTTTTTATGTCCTGAAATATGCACCAATACATTGTCC
ATTATATCATAGTGTGTCCAAAGTTGCACGCCAGGGGAGCTGATacgaaa
aacactggaaaagaAGTTTTCCTCATCAAAAACACTTGgaattttaaaat
cttcagCTAAACTTGGAAATTGTTTATGAATGTCAGCGATATCCTTTCTT
GGATCCTCACCCAGTGATCTCAAGTAATATTTCTCGTTAGATGTCAGAAA
ATAATCATCATGCTCGTTGTTAGACACTTTCCTTAAAAACTCATCAAAGC
CAAGTGTCTTGTATTGAAAATTCTTCTTGATAAAATCCATTTTAGGAACA
GGTGAAACGTGTATTTTCACAGGCATTTTTCCAAAGACTTGACTTAGATA
TTCAACATTCCATTTCTCTTTGCATTCTCCGATATCTAGGCCTCTTAGGA
CAACAGGTTTTCTTGCTTTAtaatgtgattttttgaaacTATCACAACTG
TCATTCAAGATTTCCACTGGAATTGTATTTTGTTGATTTGACTTCATCTC
AACTTACCGTTTTGTACTTTTAATTTGAACAATTAACTGAGTGTCATAAA
CATTCATTAAAATGATATAACTTAGGATAAAATGCGCGTCTTGTGTTATT
TTTCTATCAAGTTGCTACAAAAGAAGTCATGAGGAAAACTTTAAAGAATT
TTGGAAGTAATTAAGTACTGCAAACGCAGTCACAGGTAAAcattagttgc
tgagcatcaagcaaagAGGCATCATGTACCATtttggaatctttggtatg
agaAGCTTGGGGTCGAGCCCACAATCCTTGAGAAACATAGCATGTTTCTA
TAAGATTTTTAAGGCTCTGTCACTTTTTGAGCAcggccattttgcatcat
tgcgcaaaaaaattagaaaaaaataatgagcctaACCCAagaaaagctag
taacagaCAGACAAACAGACAAATGAGcattgatttatttttatta
Run BLAST on NCBI

transcript from alignment at sc0000328:315247..316792+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00019478 ID=TCONS_00019478|Name=TCONS_00019478|organism=Clytia hemisphaerica|type=transcript|length=1546bp|location=Sequence derived from alignment at sc0000328:315247..316792+ (Clytia hemisphaerica)
TGCTTGTAAGCTAACATTTGCTTGTGATCATGATACAAGAAGTATCGAAA
CGTCAAggatgaacaaaattttgtttttcgtctttacttttttttttggt
atactTGTACAAAACCTTACAAAAATGATCGTAACAAGACTGATTAGGGA
AACTGTTAAGAAAGTAGGGTACTTTCTATTTTGGCAATGAGCCTTCTTGC
AAAGAAATCTCTGTATTCTTCAGGAAGTGTTGATAAACTTTTCAATGCTT
TCTCAACACCTTGTATTGCTCGTTGCGCAGGCACCAAATCTTTATTACCA
TAAACATCCTTTTGATCATAAATTTCATACGGTAAATGTTTCCAAAACAC
ATTAACAGAGATGGCAAAGTCCAATGCTGTCACATTATGAAACCATAATG
CTGGTATAAAAAGAACATCGCCAGGCTCTAGTAAGCATTCATAACGTTCA
ACATCTTTAAACTTTGGAAATTCTCCAAAATCAGGATTGTCAATATTCAT
AACTTGCGATTTATCACCAACAAGGTACAAATTCAATGCATCAGTAGGAG
GGAAAAGCACTACTTTTTTATGTCCTGAAATATGCACCAATACATTGTCC
ATTATATCATAGTGTGTCCAAAGTTGCACGCCAGGGGAGCTGATacgaaa
aacactggaaaagaAGTTTTCCTCATCAAAAACACTTGgaattttaaaat
cttcagCTAAACTTGGAAATTGTTTATGAATGTCAGCGATATCCTTTCTT
GGATCCTCACCCAGTGATCTCAAGTAATATTTCTCGTTAGATGTCAGAAA
ATAATCATCATGCTCGTTGTTAGACACTTTCCTTAAAAACTCATCAAAGC
CAAGTGTCTTGTATTGAAAATTCTTCTTGATAAAATCCATTTTAGGAACA
GGTGAAACGTGTATTTTCACAGGCATTTTTCCAAAGACTTGACTTAGATA
TTCAACATTCCATTTCTCTTTGCATTCTCCGATATCTAGGCCTCTTAGGA
CAACAGGTTTTCTTGCTTTAtaatgtgattttttgaaacTATCACAACTG
TCATTCAAGATTTCCACTGGAATTGTATTTTGTTGATTTGACTTCATCTC
AACTTACCGTTTTGTACTTTTAATTTGAACAATTAACTGAGTGTCATAAA
CATTCATTAAAATGATATAACTTAGGATAAAATGCGCGTCTTGTGTTATT
TTTCTATCAAGTTGCTACAAAAGAAGTCATGAGGAAAACTTTAAAGAATT
TTGGAAGTAATTAAGTACTGCAAACGCAGTCACAGGTAAAcattagttgc
tgagcatcaagcaaagAGGCATCATGTACCATtttggaatctttggtatg
agaAGCTTGGGGTCGAGCCCACAATCCTTGAGAAACATAGCATGTTTCTA
TAAGATTTTTAAGGCTCTGTCACTTTTTGAGCAcggccattttgcatcat
tgcgcaaaaaaattagaaaaaaataatgagcctaACCCAagaaaagctag
taacagaCAGACAAACAGACAAATGAGcattgatttatttttatta
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_010943XLOC_010943Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00019478-exon-sc0000328-1491911889:315247..316792TCONS_00019478-exon-sc0000328-1491911889:315247..316792Clytia hemisphaericaexon
TCONS_00019478-exon-sc0000328-1510915933:315247..316792TCONS_00019478-exon-sc0000328-1510915933:315247..316792Clytia hemisphaericaexon
TCONS_00019478-exon-sc0000328-1575043694:315247..316792TCONS_00019478-exon-sc0000328-1575043694:315247..316792Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000328supercontigsc0000328:315247..316792 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
13.2243	13.1371	5.16459	3.96819	6.95612	5.96651	7.19834	7.34254	4.2313	4.04383	3.6562	3.30474	3.18816	2.13043	2.87602	4.66309	3.76488	4.20597	1.74016	0.808782	4.0043	3.32656	17.1534	16.0155	4.41592	5.8479	3.93193	2.71019	8.69664	9.99236
Blast
[Close]
BLAST of TCONS_00019478 vs. Swiss-Prot (Human)
Match: TYW5 (tRNA wybutosine-synthesizing protein 5 OS=Homo sapiens GN=TYW5 PE=1 SV=1)

HSP 1 Score: 386.341 bits (991), Expect = 1.460e-130
Identity = 180/306 (58.82%), Postives = 227/306 (74.18%), Query Frame = -3 
Query:  159 IPVEILND-SCDSFKKSHYKARKPVVLRGLDIGECKEKWNVEYLSQVFGKMPVKIHVSPVPKMDFIKKNFQYKTLGFDEFLRKVSNNEHDDYFLTSNEKYYLRSLGEDPRKDIADIHKQFPSLAEDFKIPSVFDEENFFSSVFRISSPGVQLWTHYDIMDNVLVHISGHKKVVLFPPTDALNLYLVGDKSQVMNIDNPDFGEFPKFKDVERYECLLEPGDVLFIPALWFHNVTALDFAISVNVFWKHLPYEIYDQKDVYGNKDLVPAQRAIQGVEKALKSLSTLPEEYRDFFARRLIAKIESTLLS 1073
            +PV  L   S + F +  Y  RKP+VL G+D+G C  KW V+YLSQV GK  VKIHV+ V +MDFI KNF Y+TL FD+ +++ +  +H ++F++ +EKYYLRSLGEDPRKD+ADI KQFP L  D K P  F EE FFSSVFRISSPG+QLWTHYD+MDN+L+ ++G K+VVLF P DA  LYL G KS+V+NIDNPD  ++P F    RYEC LE GDVLFIPALWFHNV + +F + VN+FWKHLP E YD+ D YGNKD   A RA Q +++ALK+L+ LPEEYRDF+ARR++  I+    S
Sbjct:    6 LPVPRLEGVSREQFMQHLYPQRKPLVLEGIDLGPCTSKWTVDYLSQVGGKKEVKIHVAAVAQMDFISKNFVYRTLPFDQLVQRAAEEKHKEFFVSEDEKYYLRSLGEDPRKDVADIRKQFPLLKGDIKFPEFFKEEQFFSSVFRISSPGLQLWTHYDVMDNLLIQVTGKKRVVLFSPRDAQYLYLKGTKSEVLNIDNPDLAKYPLFSKARRYECSLEAGDVLFIPALWFHNVISEEFGVGVNIFWKHLPSECYDKTDTYGNKDPTAASRAAQILDRALKTLAELPEEYRDFYARRMVLHIQDKAYS 311
The following BLAST results are available for this feature:
BLAST of TCONS_00019478 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
TYW51.460e-13058.82tRNA wybutosine-synthesizing protein 5 OS=Homo sap... [more]
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