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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00019463 ID=TCONS_00019463|Name=TCONS_00019463|organism=Clytia hemisphaerica|type=transcript|length=5176bpRun BLAST on NCBI protein sequence of TCONS_00019463-protein >TCONS_00019463-protein ID=TCONS_00019463-protein|Name=TCONS_00019463-protein|organism=Clytia hemisphaerica|type=polypeptide|length=1552bp MSRFLWHMLLVALSILVITEAELIQRDEAKCSKDKTLKECSWHYLAYFPRRun BLAST on NCBI transcript from alignment at sc0000328:180947..217332+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00019463 ID=TCONS_00019463|Name=TCONS_00019463|organism=Clytia hemisphaerica|type=transcript|length=36386bp|location=Sequence derived from alignment at sc0000328:180947..217332+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000328:180947..217332+ >TCONS_00019463 ID=TCONS_00019463|Name=TCONS_00019463|organism=Clytia hemisphaerica|type=CDS|length=125793bp|location=Sequence derived from alignment at sc0000328:180947..217332+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00019463 vs. Swiss-Prot (Human)
Match: PZP (Pregnancy zone protein OS=Homo sapiens GN=PZP PE=1 SV=4) HSP 1 Score: 637.106 bits (1642), Expect = 0.000e+0 Identity = 435/1442 (30.17%), Postives = 698/1442 (48.40%), Query Frame = 2
Query: 650 KNTTDYIYVQKLGLNIMVQTDRPIYKPGQTIKFRVIVVDTDLKPFTGTLNKVQIENPSGSVMRQWREVDLVDSGYASFELKTSEKPVLGKWKITAHVKSYKKVLQ-VEVKKFVLPKFKVTISPPSFILVADTTVEAEICAKYSYGKSVIGQLTTTICARKDYGYRHWYQPISLDGKNRKCKTIKKRIDGCATITIPRDDFYPIKDEKSSSNNQLAISYDAKVKESITGIELEAEKVERKMQSVGYRLSFEKFDS-FKPGFPLKTKLFVKDLDGKPADKVLVTLKVG-TNYRKGDILDKKAVVTNGVFEIDVPIPPFKHNKIYLHANHERKPLYTGETQWRRRAEDSKSLTA--WFSPSHSYLKIEKQFKGAAKIGSFVDVNVHYT--SVDAGDI-DRTVYYSTMCAGNIVDSGSFTKTFVNDXXXXXXXXXXXXXXXXXXXXXXXXXXXEIYRSIFRLNNVPPTWPPVPSTLRKGSFKFSFDITKEMMPHCKMVVYYMRGE-EMVADNTKFDVEDILENDVSIKFTSDEVKPGRSVQLNLKAAPNSKVAVTAVDTSIHFL---------AKGNDLKQKDLFDIRENLDISAGYVRSRWDRCPNPYGLRRKRSIIPYDDTEMVDSEKAFAAIGYEVLTNLRLDTXXXXXXXXXXIEFGEGDGSAEVDEDRVSGLPGPRAEKKRVETRVDATNSVNKKKPTHVRQNFPETWLWLDETVSNEGAKSIDVKVPDTITSWYASAFGISKSAGMGVAKATKIRVFQPFFISLNLPYSVIRGELLTVPAVVFNYMEDSCLSIRVSLERSLDF---QMVAGPSAKTCLCGKRSAKILFKLIPKKLGQIPIRITAETLDH-NICALSKNIDSTVSASDILVRKLRVEPEGVKNSYTLSEFICPRETPTTE-FKLRRPENLVPGSIFSKVSVIGDIMGSSLSNIDELLAMPYGCGEQNMLKFAPNIFIMNYLNHTNQATGDITDKALGYMRSGYQRELTYKHSNGGYSAFGSR--DTEASTWLTAFVLKSYAEARPWIDIDDKEIKHSSQWLLRAQSKDGCFPSIGSLHNKAMKGGVKTPATLTAYVTISLLEADVASFDTRLYAASKCVRNSLDDINDS------YSLAIIAYMFAKLKDSQGYDQVMKRLNSMAIDEAGMKHWEESKDEDDENRSPNRWYY--QARSTDIEQTAYVMLAMLEKRGKEAISD---AIPIVRWLSKQRNGLGGWSSTQDTVLAMQALANFADLTYG-SSMNMNIQMEDGKD-TNEFEITSKNNLVLQQVEDIPVPSTLKIKASGDGCALLQAHVQYNEKHVLTKPSFAVRVEEATIKTGKLTPLKTCYSQQLTVCAKWLRKGVSNMAMIDVVMVSGFSPNEKSLNKAQWTTPGLKDVETKGKNVYFYFNRFENKETCVKFIVDQEQVVEKSKEVPIKVYDYYDTEKSATVMY 4861
+NT + Q L + VQTD+P+YKPGQT++FRV+ VD + +P + + +ENP + + QW+ + L ++G S +P+ G +++ +S ++ V++FVLPKF+V + P I + D V +C +Y+YGK V G T ++C R + ++ D K C+ ++++ IT + + +++ ++ + +A+++E T +E+ A ++ ++ ++ +L F K DS F+ G P ++ + D G P L + V NY +++ G+ + + NK+++ P W TA FS S SY+ +E G G + HYT G++ + + +Y M G IV SG+ T PV S KGSF SF + ++ P +M ++ + + E+V D+ KF++E+ L N V + F+ + P L + AAP S A+ AVD S+ + + N L KDL + +N+D CP P+ + +P E D +G +V TN ++ P G G V P+ V + +S P VR FPETW+W V++ G + V VPDTIT W A AF +S+ AG+G++ +R FQPFF+ L +PYSVIRGE+ T+ A V NY+ C+ + V L+ S F Q G + C+CG + + + PK LG + ++AE + +C + D +++ L VE EG++ T S C +E L+ P N+V S + SV+GDI+GS++ NI LL MPYGCGEQNM+ FAPNI+++NYLN T Q T +I KA+GY+ +GYQR+L YKH +G YS FG R + +TWLTAFVLK++A+AR +I ID+ I S WL + Q +GCF S GSL N A+KGGV+ ATL+AYVTI+LLE + + + A C+ ++ + + Y+ A++AY F+ L +++ L+ A+ E + HWE + ++P Y QA S ++E T+YV+LA L + D A IV+W+ KQ+N GG+SSTQDTV+A+ AL+ + T+ + + ++D + + F++ + N L+LQQ+ +P I +G+ C LQ ++YN FA++V+ +T T + LT+ R SNM ++DV MVSGF P + ++ + ++ + E +V Y + N+ F+V Q+ V K +KVYDYY+T++S Y
Sbjct: 116 RNTVLVLNTQSL---VFVQTDKPMYKPGQTVRFRVVSVDENFRPRNELIPLIYLENPRRNRIAQWQSLKL-EAGINQLSFPLSSEPIQGSYRVVVQTESGGRIQHPFTVEEFVLPKFEVKVQVPKIISIMDEKVNITVCGEYTYGKPVPGLATVSLC-------RKLSRVLNCD-KQEVCEEFSQQLNSNGCIT---QQVHTKMLQITNTGFEMKLRVEARIREEGTDLEVTANRIS-EITNIVSKLKFVKVDSHFRQGIPFFAQVLLVDGKGVPIPNKLFFISVNDANYYSNATTNEQ-----GLAQFSINTTSISVNKLFVRV-FTVHPNLCFHYSWVAEDHQGAQHTANRVFSLSGSYIHLEP-VAGTLPCGHTETITAHYTLNRQAMGELSELSFHYLIMAKGVIVRSGTHTL-------------------------------------------------PVESGDMKGSFALSFPVESDVAPIARMFIFAILPDGEVVGDSEKFEIENCLANKVDLSFSPAQSPPASHAHLQVAAAPQSLCALRAVDQSVLLMKPEAELSVSSVYNLLTVKDLTNFPDNVDQQ----EEEQGHCPRPFFIHNGAIYVPLSSNE-ADIYSFLKGMGLKVFTNSKIRKPKSCSVIPSVSAGAVGQGYYGAGLGVVERPYVPQLGTYNVIPLNNEQSS--GPVPETVRSYFPETWIWELVAVNSSGVAEVGVTVPDTITEWKAGAFCLSEDAGLGISSTASLRAFQPFFVELTMPYSVIRGEVFTLKATVLNYLPK-CIRVSVQLKASPAFLASQNTKGEESY-CICGNERQTLSWTVTPKTLGNVNFSVSAEAMQSLELCGNEVVEVPEIKRKDTVIKTLLVEAEGIEQEKTFSSMTCASGANVSEQLSLKLPSNVVKESARASFSVLGDILGSAMQNIQNLLQMPYGCGEQNMVLFAPNIYVLNYLNETQQLTQEIKAKAVGYLITGYQRQLNYKHQDGSYSTFGERYGRNQGNTWLTAFVLKTFAQARSYIFIDEAHITQSLTWLSQMQKDNGCFRSSGSLLNNAIKGGVEDEATLSAYVTIALLEIPLPVTNPIVRNALFCLESAWNVAKEGTHGSHVYTKALLAYAFSLLGKQNQNREILNSLDKEAVKEDNLVHWERPQ----RPKAPVGHLYQTQAPSAEVEMTSYVLLAYLTAQPAPTSGDLTSATNIVKWIMKQQNAQGGFSSTQDTVVALHALSRYGAATFTRTEKTAQVTVQDSQTFSTNFQVDNNNLLLLQQISLPELPGEYVITVTGERCVYLQTSMKYNILPEKEDSPFALKVQTVP-QTCDGHKAHTSFQISLTISYTGNRPA-SNMVIVDVKMVSGFIPLKPTVKMLERSS-SVSRTEVSNNHVLIYVEQVTNQTLSFSFMVLQDIPVGDLKPAIVKVYDYYETDESVVAEY 1469 The following BLAST results are available for this feature:
BLAST of TCONS_00019463 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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