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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00019460 ID=TCONS_00019460|Name=TCONS_00019460|organism=Clytia hemisphaerica|type=transcript|length=932bp
catcggaacggaactgctccgttttcttgttccgaaacgttccgaaacca
atatgaacacactcgatccgtaacgaaaatcataccagagcgaaacggaa
cggtaacgtgtgaacatggtctagtactttttttctctctcttctAGTCG
GAACATACCAGATCAGTGATGGGCGTTACATGATGAGAGAACTACACGTG
CATATGCTCAATTACTTTTACCAGGAACTTTCTTCACCTCCATTCGCATC
ATCAACTTTGTCTCATGAATATAACAACTTCACAAACATacCTGGCGCAG
TGAAAGTCTCGCTATATGAAGGCTTCATCGGAAACTTGGATACCTTGCAC
GCCCAAACGCCTTCAAGAATTGGGCGTTATGACAACTTCGAATCTTTTAA
TTTCGATCGTTTATTGGAAAACTATGGTATGATTTTACAGACGTATTTTG
TACCTCCGTCTGATGGATTGTATCGTTTCATCTTGGTTTCTGATGACGAT
GCAAAACTCTTCATATCTTTGAATGATCAAGAAAGTGACAAATTTGAAAT
CGTCCACAACCTAATAGCAATTGGAACAACCGATTACAGCCGTCAATCAA
GCGCCATTCAACTTCAAGCCAACCAAAAATATTACATGGAAATTATCGGA
CGAGAAATACACTATATTATTTTATCGCAGGTGTTATTTTCCCGAACGGA
GATCAAATTGTACCGATTACCTATCAGTACTTGGAGCATTATTATTGATC
TAACGAAAAAATATCACGGGAAATTATCGCACAAgattaatatttttaat
atttttaacacgttgtttataagaaagaaaggtccaaaattttggaaaat
attttgaaggatgtttttaaccttttgaattttaagcctaaaaatgttct
taaaaagttttttttttcatgtgagtattttt Run BLAST on NCBI protein sequence of TCONS_00019460-protein >TCONS_00019460-protein ID=TCONS_00019460-protein|Name=TCONS_00019460-protein|organism=Clytia hemisphaerica|type=polypeptide|length=225bp
MMRELHVHMLNYFYQELSSPPFASSTLSHEYNNFTNIPGAVKVSLYEGFI
GNLDTLHAQTPSRIGRYDNFESFNFDRLLENYGMILQTYFVPPSDGLYRF
ILVSDDDAKLFISLNDQESDKFEIVHNLIAIGTTDYSRQSSAIQLQANQK
YYMEIIGREIHYIILSQVLFSRTEIKLYRLPISTWSIIIDLTKKYHGKLS
HKINIFNIFNTLFIRKKGPKFWKIF Run BLAST on NCBI transcript from alignment at sc0000328:169955..172531+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00019460 ID=TCONS_00019460|Name=TCONS_00019460|organism=Clytia hemisphaerica|type=transcript|length=2577bp|location=Sequence derived from alignment at sc0000328:169955..172531+ (Clytia hemisphaerica)
catcggaacggaactgctccgttttcttgttccgaaacgttccgaaacca
atatgaacacactcgatccgtaacgaaaatcataccagagcgaaacggaa
cggtaacgtgtgaacatggtctagtactttttttctctctcttctAGTCG
GAACATACCAGATCAGTGATGGGCGTTACATGATGAGAGAACTACACGTG
CATATGCTCAATTACTTTTACCAGGAACTTTCTTCACCTCCATTCGCATC
ATCAACTTTGTCTCATGAATATAACAACTTCACAAACATacgtaagaaaa
ttattcaTCGACCGCTTGAGAGTAGTTTTAATGGTGTAGATATATAAGta
tttaagtttgcctttcctcttaacaatacaccttttcgtcCGTAGCCGTC
AATTTCCGCGCGGgcaattttttgtccattttaccaccctaaaaccgttc
cAGTCTTTTCACatctaaagacaatagaaaagtgtaaaaaaaggattgga
tcgagtttagggtggtagattaaataataaagtgacaAGCGCCTGACctc
gcgactacggtcgaaaaggtgtactgTGGCAGTTCATAACGTTACGAGAA
AGGGTTTGTaaaagtttcttattttttgaagccattggatgttcttaact
ttttgatttttaagccgaaaaattttcttaatatgttcttaatatcacta
ttttgttagttttttaaagcaatttcttaagaaattgggtattttagagt
ccacaaagccttgaaatgttcacAGCTTGTATTCTTAAtagtttcttctt
ataaaaaagaaaagagtcAAAGCCAGATTTTTTAGCTACTTATATTCCTA
TGAGCATCAGCATAGCAACTTGGATGAAAAGgtcattacacgttttttat
aagaacaagctatattagaacataaggcttcgacggcaaaaatgttaaga
ataagttagaaacatttgaaggctttgtggactctaaaacacctgatttc
ttagggaaattggcaaaaacactcacaaattggtgaaattaagaacatgt
taagaacaatttttaggcttgaaactcaaaaagttaaaaacattcgaagg
cttcaaaaattttgatgctcttataaaaacgtgtattttttctaaatctt
aTCAAGGAAActtgagaaattgaaaaagtcatttttttacttttctttgt
cAAAAACAGCTGGCGCAGTGAAAGTCTCGCTATATGAAGGCTTCATCGGA
AACTTGGATACCTTGCACGCCCAAACGCCTTCAAGAATTGGGCGTTATGA
CAACTTCGAATCTTTTAATTTCGATCGTTTATTGGAAAACTATGGTATGA
TTTTACAGACGTATTTTGTACCTCCGTCTGATGGATTGTATCGTTTCATC
TTGGTTTCTGATGACGATGCAAAACTCTTCATATCTTTGAATGATCAAGA
AAGTGACAAATTTGAAATCGTCCACAACCTAATAGCAATTGGAACAACCG
ATTACAGGTTTGTTAGTAgcttttcctttaaatttttttcgggTTTCGAA
GACGAGAGAAGAGGGGAATGAAGCAAAAAAGTGGGGAAGGGGACAGATGA
GAAGgtgaaaaagtgaagaaaagaaGAGGGGCAAGATGAGAAGTAGAAAA
GAGGAGAAGCGGCGAAGGGGGGAGATAGGATGAATAAAAGCGGGAAGGGG
GAGACGGGAAGGTGAAAAGAGGGAAGATAGGAAAATAGGAAGGGGAAAAA
GTGCAAAGGAGAGAGTAGAAGGGGGAAATGAGGGAAGGGGTGAGATGACA
AGGGGAAGAGTGGGAGGGGAGACGAGAAGGGGAAAGAGGGAGGGGGAGAC
TGGAAggagaaaaaggagaaaagatgAGAAGAAGAAAAAGGGGAAATGGA
AGGTTAGAGTAAGGAGGAAAGATGGGAAGGGGAAAGGGGAAAGGGGAGGG
AGAGGTGAGTGTGGGAAGGGGAAGGGGAGAGTAGAAGGTGAATGAGGGGA
GTGGGCAAGAGGAGGGGGGGAGGTGAAAGAGGGAACTGGACAAGAAGAGC
TTGGGGAAGGGTAAGGGGAGAGTAGAAGGTGAAATAGGGAACTGGACAAG
AAGAGAAGAGGGAAGGGGGGAAGACAAAAAGGTtctttttgtgaaagttt
catGATAGAGGCCTGGGATTCAAAGATTATCTTTGCATGGTATGGGTTTA
CAAGAGCTAATTTTTTGGTTAATTTCTATGATAGCCGTCAATCAAGCGCC
ATTCAACTTCAAGCCAACCAAAAATATTACATGGAAATTATCGGACGAGA
AATACACTATATTATTTTATCGCAGGTGTTATTTTCCCGAACGGAGATCA
AATTGTACCGATTACCTATCAGTACTTGGAGCATTATTATTGATCTAACG
AAAAAATATCACGGGAAATTATCGCACAAgattaatatttttaatatttt
taacacgttgtttataagaaagaaaggtccaaaattttggaaaatatttt
gaaggatgtttttaaccttttgaattttaagcctaaaaatgttcttaaaa
agttttttttttcatgtgagtattttt Coding sequence (CDS) from alignment at sc0000328:169955..172531+ >TCONS_00019460 ID=TCONS_00019460|Name=TCONS_00019460|organism=Clytia hemisphaerica|type=CDS|length=2034bp|location=Sequence derived from alignment at sc0000328:169955..172531+ (Clytia hemisphaerica)
ATGATGAGAGAACTACACGTGCATATGCTCAATTACTTTTACCAGGAACT
TTCTTCACCTCCATTCGCATCATCAACTTTGTCTCATGAATATAACAACT
TCACAAACATacCTGGCGCAGTGAAAGTCTCGCTATATGAAGGCTTCATC
GGAAACTTGGATACCTTGCACGCCCAAACGCCTTCAAGAATTGGGCGTTA
TGACAACTTCGAATCTTTTAATTTCGATCGTTTATTGGAAAACTATGGTA
TGATTTTACAGACGTATTTTGTACCTCCGTCTGATGGATTGTATCGTTTC
ATCTTGGTTTCTGATGACGATGCAAAACTCTTCATATCTTTGAATGATCA
AGAAAGTGACAAATTTGAAATCGTCCACAACCTAATAGCAATTGGAACAA
CCGATTACAGCCGTCAATCAAGCGCCATTCAACTTCAAGCCAACCAAAAA
TATTACATGGAAATTATCGGACGAGAAATACACTATATTATTTTATCGCA
GGTGTTATTTTCCCGAACGGAGATCAAATTGTACCGATTACCTATCAGTA
CTTGGAGCATTATTATTGATCTAACGAAAAAATATCACGGGAAATTATCG
CACAAgattaatatttttaatatttttaacacgttgtttataagaaagaa
aggtccaaaattttggaaaatattttgaATGATGAGAGAACTACACGTGC
ATATGCTCAATTACTTTTACCAGGAACTTTCTTCACCTCCATTCGCATCA
TCAACTTTGTCTCATGAATATAACAACTTCACAAACATacCTGGCGCAGT
GAAAGTCTCGCTATATGAAGGCTTCATCGGAAACTTGGATACCTTGCACG
CCCAAACGCCTTCAAGAATTGGGCGTTATGACAACTTCGAATCTTTTAAT
TTCGATCGTTTATTGGAAAACTATGGTATGATTTTACAGACGTATTTTGT
ACCTCCGTCTGATGGATTGTATCGTTTCATCTTGGTTTCTGATGACGATG
CAAAACTCTTCATATCTTTGAATGATCAAGAAAGTGACAAATTTGAAATC
GTCCACAACCTAATAGCAATTGGAACAACCGATTACAGCCGTCAATCAAG
CGCCATTCAACTTCAAGCCAACCAAAAATATTACATGGAAATTATCGGAC
GAGAAATACACTATATTATTTTATCGCAGGTGTTATTTTCCCGAACGGAG
ATCAAATTGTACCGATTACCTATCAGTACTTGGAGCATTATTATTGATCT
AACGAAAAAATATCACGGGAAATTATCGCACAAgattaatatttttaata
tttttaacacgttgtttataagaaagaaaggtccaaaattttggaaaata
ttttgaATGATGAGAGAACTACACGTGCATATGCTCAATTACTTTTACCA
GGAACTTTCTTCACCTCCATTCGCATCATCAACTTTGTCTCATGAATATA
ACAACTTCACAAACATacCTGGCGCAGTGAAAGTCTCGCTATATGAAGGC
TTCATCGGAAACTTGGATACCTTGCACGCCCAAACGCCTTCAAGAATTGG
GCGTTATGACAACTTCGAATCTTTTAATTTCGATCGTTTATTGGAAAACT
ATGGTATGATTTTACAGACGTATTTTGTACCTCCGTCTGATGGATTGTAT
CGTTTCATCTTGGTTTCTGATGACGATGCAAAACTCTTCATATCTTTGAA
TGATCAAGAAAGTGACAAATTTGAAATCGTCCACAACCTAATAGCAATTG
GAACAACCGATTACAGCCGTCAATCAAGCGCCATTCAACTTCAAGCCAAC
CAAAAATATTACATGGAAATTATCGGACGAGAAATACACTATATTATTTT
ATCGCAGGTGTTATTTTCCCGAACGGAGATCAAATTGTACCGATTACCTA
TCAGTACTTGGAGCATTATTATTGATCTAACGAAAAAATATCACGGGAAA
TTATCGCACAAgattaatatttttaatatttttaacacgttgtttataag
aaagaaaggtccaaaattttggaaaatattttga
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00019460-exon-sc0000328-1491911889:169955..170245 | TCONS_00019460-exon-sc0000328-1491911889:169955..170245 | Clytia hemisphaerica | exon |
| TCONS_00019460-exon-sc0000328-1510915933:169955..170245 | TCONS_00019460-exon-sc0000328-1510915933:169955..170245 | Clytia hemisphaerica | exon |
| TCONS_00019460-exon-sc0000328-1575043694:169955..170245 | TCONS_00019460-exon-sc0000328-1575043694:169955..170245 | Clytia hemisphaerica | exon |
| TCONS_00019460-exon-sc0000328-1491911889:171164..171461 | TCONS_00019460-exon-sc0000328-1491911889:171164..171461 | Clytia hemisphaerica | exon |
| TCONS_00019460-exon-sc0000328-1510915933:171164..171461 | TCONS_00019460-exon-sc0000328-1510915933:171164..171461 | Clytia hemisphaerica | exon |
| TCONS_00019460-exon-sc0000328-1575043694:171164..171461 | TCONS_00019460-exon-sc0000328-1575043694:171164..171461 | Clytia hemisphaerica | exon |
| TCONS_00019460-exon-sc0000328-1491911889:172189..172531 | TCONS_00019460-exon-sc0000328-1491911889:172189..172531 | Clytia hemisphaerica | exon |
| TCONS_00019460-exon-sc0000328-1510915933:172189..172531 | TCONS_00019460-exon-sc0000328-1510915933:172189..172531 | Clytia hemisphaerica | exon |
| TCONS_00019460-exon-sc0000328-1575043694:172189..172531 | TCONS_00019460-exon-sc0000328-1575043694:172189..172531 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
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| sc0000328 | supercontig | sc0000328:169955..172531 + |
Annotated Terms
The following terms have been associated with this transcript:
Blast
The following BLAST results are available for this feature:
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