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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00019455 ID=TCONS_00019455|Name=TCONS_00019455|organism=Clytia hemisphaerica|type=transcript|length=1344bp
GATACAGTACTGTTTTTGATATACTGTTGGAATTACAATAGACTTCAGAA
AGAtactaaacataaaaacacTCTCTTGCAGTACGCTCTTCATCAGATTA
CAAGGTTACGAAGTATGAGATTTGAAataaacaaagtaaaaaagtaCTAG
CCGCTGTTTTTCAGACCTGGTTCATAGTTCCACTAATATTGGAAAAGACT
GACAAGGCGTCTACGGACCTtggaaatttctcgaaaaattTGGTGAGTGA
TGTCGAAAATCCCAGGACTCGATGAAACGATCCGGAGTTTTCAATATGTT
GGTGATGTCATCGCAAACAATCCTGAAAGAGCTAAGTCCCGTTGGAAAAA
TTATACAGAAGATAGTGTTTTTGGGACAGTTCTTAACACTGGTTACGCCT
TAGTTGGATTTAGCGTGGCTAAGcTGGCTAGAAATGACAGTCATGCGGAA
AGATTCGCCAGAAAGTATGTGAGCAGCTTCGAAAAATTTGGTGCTGTAAG
TACGAGTGCTATTTGTCAAACCGCTGGTATGGGAGCACAAGCCATGACTT
TTGGAATTCCAAATCAGGTATCAGGTGGTCTTATGGGGCTTGGTGCGGGT
ACTGCTCAAGTTGTAAATCAATGTGCTACCAGCGATGGGATCGATCTTGA
TGCTTATTGTAAAGAAGGTGTCATTGGTATGGTTAGAGGTGGAGCTAGCC
TTGGAGGATTATTAATCCCGTTTGTTGGTACGGTGGTCGAGAATAAACTT
CNCCCGGTTTCAGGTGGTCTTATGAGGCTTGGTGCGGGTACTGCTCAAGT
TGTAAATCAATGTGCTACCAGCGATGAGATCGATCTTGATGCTTATTGTA
AAGAAGGTGTCATTGGTATGGTTAGAGGTGGTGCTAGCCTTGGAGGATTA
ATCCCGTTTGTTGGTACGGTGGTCGAGAATAAACTTCGAGGCCAAAATAC
TGAGTTGAATCCTCAGAAAGAGCTTGTCAGCTGCTTTTTGAACATTGGTA
CAACGGTTGTTTCGGCTGGTACCTTAGATTTGACTTCCGAGTTGGTTAAA
GCTGGAGAGGTAGGTATGAAATCATCAATGGCCATTGCAGGAAGTGTTGG
TTTTGTATCTGGGGCTGCTTCTAATCTTGTTACTCAAATAGTAAACAGTG
AAACTGCAAAAAGGGAAATAGTAAATCAAGGATACTGTTTTGCCCATACC
TTAATCCTTAAAAATGGTATAGACGTTGATGTCTACACCAAAAAAGGAGA
ACCTAATAAATATGTACCTCGGGTTTACATCGGTGAAGCTATCGCGCAAG
GCTTTCTGAATGGTCTGACGCAAGCTATAGCAgctcgaaaaaaa Run BLAST on NCBI protein sequence of TCONS_00019455-protein >TCONS_00019455-protein ID=TCONS_00019455-protein|Name=TCONS_00019455-protein|organism=Clytia hemisphaerica|type=polypeptide|length=365bp
MSKIPGLDETIRSFQYVGDVIANNPERAKSRWKNYTEDSVFGTVLNTGYA
LVGFSVAKLARNDSHAERFARKYVSSFEKFGAVSTSAICQTAGMGAQAMT
FGIPNQVSGGLMGLGAGTAQVVNQCATSDGIDLDAYCKEGVIGMVRGGAS
LGGLLIPFVGTVVENKLXPVSGGLMRLGAGTAQVVNQCATSDEIDLDAYC
KEGVIGMVRGGASLGGLIPFVGTVVENKLRGQNTELNPQKELVSCFLNIG
TTVVSAGTLDLTSELVKAGEVGMKSSMAIAGSVGFVSGAASNLVTQIVNS
ETAKREIVNQGYCFAHTLILKNGIDVDVYTKKGEPNKYVPRVYIGEAIAQ
GFLNGLTQAIAARKK Run BLAST on NCBI transcript from alignment at sc0000328:70571..72155+ Legend: exonfive_prime_UTRCDS Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00019455 ID=TCONS_00019455|Name=TCONS_00019455|organism=Clytia hemisphaerica|type=transcript|length=1585bp|location=Sequence derived from alignment at sc0000328:70571..72155+ (Clytia hemisphaerica)
GATACAGTACTGTTTTTGATATACTGTTGGAATTACAATAGACTTCAGAA
AGAtactaaacataaaaacacTCTCTTGCAGTACGCTCTTCATCAGATTA
CAAGGTTACGAAGTATGAGATTTGAAataaacaaagtaaaaaagtaCTAG
CCGCTGTTTTTCAGACCTGGTTCATAGTTCCACTAATATTGGAAAAGACT
GACAAGGCGTCTACGGACCTtggaaatttctcgaaaaattTGGTGAGTGA
TGTCGAAAATCCCAGGACTCGATGAAACGATCCGGAGTTTTCAATATGTT
GGTGATGTCATCGCAAACAATCCTGAAAGAGCTAAGTCCCGTTGGAAAAA
TTATACAGAAGATAGTGTTTTTGGGACAGTTCTTAACACTGGTTACGCCT
TAGTTGGATTTAGCGTGGCTAAGGTAAGGGAATACAGTACATTTCTTGTG
TTAACAAATTAAGTCTTAAATGgtcttttatttttgattagGAATTCTTA
ATGCTCTTAAAAGTCCCTTGTGTCGTGAACGTGCAAGaattcaactccaa
cattgattttgggggaaggggggggggaCGTGACAGAGTTGGTATCATCG
GACACCAGTTCTGACCACGTTTGTACGTTTATCAAACTAAAAAgaattca
ctttcatttttcagcTGGCTAGAAATGACAGTCATGCGGAAAGATTCGCC
AGAAAGTATGTGAGCAGCTTCGAAAAATTTGGTGCTGTAAGTACGAGTGC
TATTTGTCAAACCGCTGGTATGGGAGCACAAGCCATGACTTTTGGAATTC
CAAATCAGGTATCAGGTGGTCTTATGGGGCTTGGTGCGGGTACTGCTCAA
GTTGTAAATCAATGTGCTACCAGCGATGGGATCGATCTTGATGCTTATTG
TAAAGAAGGTGTCATTGGTATGGTTAGAGGTGGAGCTAGCCTTGGAGGAT
TATTAATCCCGTTTGTTGGTACGGTGGTCGAGAATAAACTTCNCCCGGTT
TCAGGTGGTCTTATGAGGCTTGGTGCGGGTACTGCTCAAGTTGTAAATCA
ATGTGCTACCAGCGATGAGATCGATCTTGATGCTTATTGTAAAGAAGGTG
TCATTGGTATGGTTAGAGGTGGTGCTAGCCTTGGAGGATTAATCCCGTTT
GTTGGTACGGTGGTCGAGAATAAACTTCGAGGCCAAAATACTGAGTTGAA
TCCTCAGAAAGAGCTTGTCAGCTGCTTTTTGAACATTGGTACAACGGTTG
TTTCGGCTGGTACCTTAGATTTGACTTCCGAGTTGGTTAAAGCTGGAGAG
GTAGGTATGAAATCATCAATGGCCATTGCAGGAAGTGTTGGTTTTGTATC
TGGGGCTGCTTCTAATCTTGTTACTCAAATAGTAAACAGTGAAACTGCAA
AAAGGGAAATAGTAAATCAAGGATACTGTTTTGCCCATACCTTAATCCTT
AAAAATGGTATAGACGTTGATGTCTACACCAAAAAAGGAGAACCTAATAA
ATATGTACCTCGGGTTTACATCGGTGAAGCTATCGCGCAAGGCTTTCTGA
ATGGTCTGACGCAAGCTATAGCAgctcgaaaaaaa Coding sequence (CDS) from alignment at sc0000328:70571..72155+ >TCONS_00019455 ID=TCONS_00019455|Name=TCONS_00019455|organism=Clytia hemisphaerica|type=CDS|length=2190bp|location=Sequence derived from alignment at sc0000328:70571..72155+ (Clytia hemisphaerica)
ATGTCGAAAATCCCAGGACTCGATGAAACGATCCGGAGTTTTCAATATGT
TGGTGATGTCATCGCAAACAATCCTGAAAGAGCTAAGTCCCGTTGGAAAA
ATTATACAGAAGATAGTGTTTTTGGGACAGTTCTTAACACTGGTTACGCC
TTAGTTGGATTTAGCGTGGCTAAGcTGGCTAGAAATGACAGTCATGCGGA
AAGATTCGCCAGAAAGTATGTGAGCAGCTTCGAAAAATTTGGTGCTGTAA
GTACGAGTGCTATTTGTCAAACCGCTGGTATGGGAGCACAAGCCATGACT
TTTGGAATTCCAAATCAGGTATCAGGTGGTCTTATGGGGCTTGGTGCGGG
TACTGCTCAAGTTGTAAATCAATGTGCTACCAGCGATGGGATCGATCTTG
ATGCTTATTGTAAAGAAGGTGTCATTGGTATGGTTAGAGGTGGAGCTAGC
CTTGGAGGATTATTAATCCCGTTTGTTGGTACGGTGGTCGAGAATAAACT
TCNCCCGGTTTCAGGTGGTCTTATGAGGCTTGGTGCGGGTACTGCTCAAG
TTGTAAATCAATGTGCTACCAGCGATGAGATCGATCTTGATGCTTATTGT
AAAGAAGGTGTCATTGGTATGGTTAGAGGTGGTGCTAGCCTTGGAGGATT
AATCCCGTTTGTTGGTACGGTGGTCGAGAATAAACTTCGAGGCCAAAATA
CTGAGTTGAATCCTCAGAAAGAGCTTGTCAGCTGCTTTTTGAACATTGGT
ACAACGGTTGTTTCGGCTGGTACCTTAGATTTGACTTCCGAGTTGGTTAA
AGCTGGAGAGGTAGGTATGAAATCATCAATGGCCATTGCAGGAAGTGTTG
GTTTTGTATCTGGGGCTGCTTCTAATCTTGTTACTCAAATAGTAAACAGT
GAAACTGCAAAAAGGGAAATAGTAAATCAAGGATACTGTTTTGCCCATAC
CTTAATCCTTAAAAATGGTATAGACGTTGATGTCTACACCAAAAAAGGAG
AACCTAATAAATATGTACCTCGGGTTTACATCGGTGAAGCTATCGCGCAA
GGCTTTCTGAATGGTCTGACGCAAGCTATAGCAgctcgaaaaaaaATGTC
GAAAATCCCAGGACTCGATGAAACGATCCGGAGTTTTCAATATGTTGGTG
ATGTCATCGCAAACAATCCTGAAAGAGCTAAGTCCCGTTGGAAAAATTAT
ACAGAAGATAGTGTTTTTGGGACAGTTCTTAACACTGGTTACGCCTTAGT
TGGATTTAGCGTGGCTAAGcTGGCTAGAAATGACAGTCATGCGGAAAGAT
TCGCCAGAAAGTATGTGAGCAGCTTCGAAAAATTTGGTGCTGTAAGTACG
AGTGCTATTTGTCAAACCGCTGGTATGGGAGCACAAGCCATGACTTTTGG
AATTCCAAATCAGGTATCAGGTGGTCTTATGGGGCTTGGTGCGGGTACTG
CTCAAGTTGTAAATCAATGTGCTACCAGCGATGGGATCGATCTTGATGCT
TATTGTAAAGAAGGTGTCATTGGTATGGTTAGAGGTGGAGCTAGCCTTGG
AGGATTATTAATCCCGTTTGTTGGTACGGTGGTCGAGAATAAACTTCNCC
CGGTTTCAGGTGGTCTTATGAGGCTTGGTGCGGGTACTGCTCAAGTTGTA
AATCAATGTGCTACCAGCGATGAGATCGATCTTGATGCTTATTGTAAAGA
AGGTGTCATTGGTATGGTTAGAGGTGGTGCTAGCCTTGGAGGATTAATCC
CGTTTGTTGGTACGGTGGTCGAGAATAAACTTCGAGGCCAAAATACTGAG
TTGAATCCTCAGAAAGAGCTTGTCAGCTGCTTTTTGAACATTGGTACAAC
GGTTGTTTCGGCTGGTACCTTAGATTTGACTTCCGAGTTGGTTAAAGCTG
GAGAGGTAGGTATGAAATCATCAATGGCCATTGCAGGAAGTGTTGGTTTT
GTATCTGGGGCTGCTTCTAATCTTGTTACTCAAATAGTAAACAGTGAAAC
TGCAAAAAGGGAAATAGTAAATCAAGGATACTGTTTTGCCCATACCTTAA
TCCTTAAAAATGGTATAGACGTTGATGTCTACACCAAAAAAGGAGAACCT
AATAAATATGTACCTCGGGTTTACATCGGTGAAGCTATCGCGCAAGGCTT
TCTGAATGGTCTGACGCAAGCTATAGCAgctcgaaaaaaa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00019455-exon-sc0000328-1491911889:70571..70993 | TCONS_00019455-exon-sc0000328-1491911889:70571..70993 | Clytia hemisphaerica | exon |
| TCONS_00019455-exon-sc0000328-1510915933:70571..70993 | TCONS_00019455-exon-sc0000328-1510915933:70571..70993 | Clytia hemisphaerica | exon |
| TCONS_00019455-exon-sc0000328-1575043694:70571..70993 | TCONS_00019455-exon-sc0000328-1575043694:70571..70993 | Clytia hemisphaerica | exon |
| TCONS_00019455-exon-sc0000328-1491911889:71235..72155 | TCONS_00019455-exon-sc0000328-1491911889:71235..72155 | Clytia hemisphaerica | exon |
| TCONS_00019455-exon-sc0000328-1510915933:71235..72155 | TCONS_00019455-exon-sc0000328-1510915933:71235..72155 | Clytia hemisphaerica | exon |
| TCONS_00019455-exon-sc0000328-1575043694:71235..72155 | TCONS_00019455-exon-sc0000328-1575043694:71235..72155 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000328 | supercontig | sc0000328:70571..72155 + |
Blast
The following BLAST results are available for this feature:
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