TCONS_00019450 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00019450
Unique Name	TCONS_00019450
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	1249

Sequence

The following sequences are available for this feature:

transcript sequence
transcript from alignment at sc0000328:21972..29520+

transcript sequence

>TCONS_00019450 ID=TCONS_00019450|Name=TCONS_00019450|organism=Clytia hemisphaerica|type=transcript|length=1249bp
TTATAGTCTAGAACACCAACTTCAATCACTATTTCCATCAATGGAGAAGA
TgaAGTGTATGAGTTACTATCGGTGTTAGATTTTGATAATGTTCGGAAAC
GTATGTCGGTCATTGTGCGAAAAGATTCCAAAATCATGTTGTATTGCAAG
GGAGCAGataCTATCATCTACGAATTATTATCAAATCAATCACAACCTAT
AATGGAGCCGACACAGCAACATCTAGATACATTCGCTTGCGAAGGGCTAA
GAACACTATGTCTTGCATCTAAAGAACTCTCGCAAGGTGAATTTGAAGAT
TGGGCGGAAGAATTCAACGAGGCTAGGACATCTACAGAGGACCGTGACGA
AAAAGTATTCGAAGTATACTGTTCCATTGAGAAAGATTTGAATCTACTTG
GTGCCACTGCTATTGAAGATAAACTTCAAGATGGTGTTCCAGATGCCATT
GCCAACCTTGCTGAGgcaaacatcaaaatctttgttCTTACGGGAGACAA
ACAAGAAACTGCAATAAATATCGGATATTCCAGTATGCTACTTACAGAAA
ACATGCATGACGTATTCGTCGTAGAAGGTGATAACCTGCAAACAGTACAC
GCAAACATCAATAAATATACTGACAGAATGAACGAAATACAAACCCTTGA
AGGAAACGCTCCCAAAATCTATTTCAGTGGTGTCAACGATCACGAGTCTG
TACCAATGGAAGACGTAGACGAAAATATGAAGGATGGTTTCGCCCTGGTC
ATCTCTGGAAAATCTCTGGCTTTTGCGTTGTTACCTGAAGCAGAGCAAGA
CTTTTTACGCTTGGCGCTCGCATGCAAAGCGGTTATTTGTTGTCGAGTGA
CTCCTTTACAAAAGGCATTGGTTGTTGAGTTAGTGAAGAAGAATGTGAAG
GCGACAACCTTGGCAATCGGTGATGGTGCTAACGATGTCAGTATGATTAA
AGCGGCACACATAGGAGTGGGTATCAGTGGGAAAGAAGGAAGACAGGCTG
TTCTAGCTGCGGATTATTCATTTGCTCAATTCAGGTTTTTAGAGAGATTG
TTGCTGGTTCATGGTCGCTGGTCTTATTGGCGGATGTCAAAGTTCTTGAA
TTATTTCTTCTACAAAAATTTCGCTTTCACATTAGTTCAATTTTGGTATA
ATCTTTTCACTGGATTCTCCGCTATGACTTTATATGACGATTACTTTCTA
TCCGTTTACAACGTTTGTTTCACCTCATTACCAGTCCTCGCAATGGGNG

Run BLAST on NCBI

transcript from alignment at sc0000328:21972..29520+

Legend: exon

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00019450 ID=TCONS_00019450|Name=TCONS_00019450|organism=Clytia hemisphaerica|type=transcript|length=7549bp|location=Sequence derived from alignment at sc0000328:21972..29520+ (Clytia hemisphaerica)
TTATAGTCTAGAACACCAACTTCAATCACTATTTCCATCAATGGAGAAGA
TGTATGTAGTTATTTGCTAAATTACTCAGAGTCAGTATTTTACATGGATA
GCCCAGCAATCTAGCCTTTCGAATATTTTCACGGTCTACGGGCAGCCacc
tcggctatctatgaacttaACGGAACATAGAAAGAGCGCGGATTCAAACC
GGGAACCCCTGGTTTCAGAATCATAAGCTATCAGTATcatcatatttttt
caaaatgaaaatggtaGTTCTATGATTCTGCTTTCTGTTAAGGAAAAGTT
TGCTTGCCAATTTTTACTGTTATCAgccctttcttcttttttaggaAGTG
TATGAGTTACTATCGGTGTTAGATTTTGATAATGTTCGGAAACGTATGTC
GGTAAGTCTTTCGAAACTTTCTTACCTTCTTAGTTTAAAACGACTGGAAA
ATTTATTCACTCAACGATCACGCGCACTAAATATTAAANTATAAATATAA
GATAATATATAAACCCTTTGTAATGAAAATTCCTTACCTTCTTAGTATAA
AACGACTGGAAAATTTATTCACTCAACGATCACGCGCACTAAATATTAAA
TAGTATGCCTCCAAACTTTGTGAGAAACAATTCTTAGTCTACTCATGTTC
GTCTCGAAGTTATTGTATTCTGTCCCTGATAGGTTCAGAGGCGAACAAAA
CCTAACCTATGACTCTGTATTCATTTATGTTATAATATTTTTCTACCATA
TGCAACTTAGGTCATTGTGCGAAAAGATTCCAAAATCATGTTGTATTGCA
AGGGAGCAGGTTTGGCTTTTTTCTGTTATGGGCTTTCTTTAGGGATCGGG
TTCTAAATTTGGTGAGgaacaacattttcaaaaactgtctCCCTGAGAAT
CATTTACTTTCAACAATAAGGGTCATTTTTCGCTAAAACTTGCTTTCGCT
AAAAATTTCTTAAAGACTCGGTTCTTAGAAATCTTGGGTCCTCACATAGC
cgtcattcgccaaccctattACCCCCGGTTATTTTGCAAATACATGAAAT
GTTTATTCtaaactttgatttttttttttcaatagataCTATCATCTACG
AATTATTATCAAATCAATCACAACCTATAATGGAGCCGACACAGCAACAT
CTAGATGTAATATTTCTCCTCTTTACTTCTACTTACTTTCTGTTCCCCGT
CTGATCTCGTTTTATACAGTAGCATCCTTAAGCTTTATAAGTTCTTTGGA
TCCACGTTCTCAAATATTGCCCTCTATGAGAAAATTAACATGAAATTTAA
TCCCTATCGAAAAAGTAGTAATTTCCCATTCCCACTCGGGAAAGACATGA
TTTCGAGAAACCCAAATAGAATTTAGAACCGAGAAAAATGGATCTAGTAT
TGGCCATCCTATCAAAAACAGAGAATGAATTCGATGAAAATGATTTGCAC
AGtattttgaagtttattttcttcattCGCATTAGACATTCGCTTGCGAA
GGGCTAAGAACACTATGTCTTGCATCTAAAGAACTCTCGCAAGGTGAATT
TGAAGATTGGGCGGAAGAATTCAACGAGGCTAGGTATGAATAAAcaatgg
aattattatagacactggaaaaacaacgagctgatttttgccaatttctc
atgtacaagccttgtccgcagttatgacattattgttcaccctccttcca
ccattaaatgattttttcgtagcattttagttgcatttctcatcaaaatc
acttgTCCAATTTCAAATTagactttaagttctcctccgagattcaaact
catctagttaattactaatcatacgtcgttatgacgttttaaatttcgag
aaagatgcaaaaacatgttatgtataagaaattgaatattgacaccagaa
atttttaaatatcaacctcaaaaaatccaccgtgccaccacgtgccacca
aaaaattttcataccacagttgagctatgagactcacatctaatatatgt
caatctcagctcttcttggagaaatattggaaagatattcccaattcaaa
atttcgtgccattataagcattttgtttgattttactcgtctgatgatTT
CTCTCTCACACCAGATCTCATAAATGTATCCgtttggtattctagcattt
attttcaaacttttggccagcaaaagtacaaatagaaaaagttagagaac
tttttagaaataagagtattaatcatttttcaaaatcagagttcTTCGAA
CCGCCATGACaattgtcctttgcggacaaagcctgtacattGATTGTTTc
ctaaaacaatagaaagacaatacttcgctctccaccatttctttcgatgt
ttatccagagtctctataataaatccatggtaGTACGAAATGTACAATAA
TTCCCCAAGCGAGAGGGAGAAGTGAGTATTAAGGCGAGTTCACCAACTTG
ATTGCAGCATATACTTCCCCACCACTGTTTTTATGACTTGCTTAGTTATC
ACGTGTTTTGCTGTAcattaaagtgacgtcaatctcTTGAAACACTACTA
TCTTCTCTTGCGATTCCTGAGTGGAGTAAAAAGTTGCAGGCGGAATGTTG
TCGAGAAAAAGCCCGTGTCCGTTTGATAGAGAGATCAACTTATTGGTTCT
ACAGCGTTCGATTCAAATTAGTATTTCGCGTTTATTTGTAAATGCTTTTT
AGGACATCTACAGAGGACCGTGACGAAAAAGTATTCGAAGTATACTGTTC
CATTGAGAAAGATTTGAATCTACTTGGTGCCACTGCTATTGAAGATAAAC
TTCAAGATGGTGTTCCAGATGCCATTGCCAACCTTGCTGAGGTTTGTTAT
CTTTTCTTAAGACCACGTTCACATACCATGGTTCCGTTTAGCTCCGAAAC
GAGATAAAGCCATTCTACTGGTTAGATTTAATTTTACGTTGCTTCTAACG
CGTAGAATGTCTCCATTTCGTTTTAGAGCGAAACGAAACCGTAGCCGAAA
CCGAAAAGAACCCTTTAATACCCTCATGAAACATATGTGCGAAATTTCAG
TCACGTATTATTTTTCAAGGATACGGTCTTTCTGAGTAGAATATCCCCGG
ACTAAGTCGATTTTCGTTCAATTTCTCAACCTGAAAAATGTAATGTCTAT
GTTCTAGTATAGTTTTTATTAATTTATCTTTTCACTCTTATTTGCAGgca
aacatcaaaatctttgttCTTACGGGAGACAAACAAGGTGTGTCAATGTG
TCAATTAAGCTCAATCTTCTATTAAATTCACTCTCGACGATATCCTCGGG
ACGACTGTGCAATATTTATTCAACTAACCTAAGATTAACTAACTAGATTA
TTTTATGAATTGATGGAAAGAGATTCCTTTGCACTTGACCATAACACATA
GAATGGCTAccagtttttgaaaaactaaactttGATATTTTGATCCAAGG
TACAAATAGCCACCTAACGATGTTTCATAATTTCGAAAATTAGGGGAAAT
GGTTTTTTCCTGACATAAGGAAAACACCATTCATATACAAGATCTTTCGC
TCATATCTTTGAACATTATCGAATgtctaaaatagaaatacataaaataa
cagattataatcaaataaatcaggaaaaaaatcaaaaaacaacaaactta
ATTCCTTCTTTTCTCGTCATAGAAACTGCAATAAATATCGGATATTCCAG
TATGCTACTTACAGAAAACATGCATGACGTATTCGTCGTAGAAGGTGATA
ACCTGCAAACAGTACACGCAAACATCAATAAATATACTGACAGAATGAAC
GAAATACAAACCCTTGAAGGAAACGCTCCCAAAATCTATTTCAGTGGTGT
CAACGATCACGAGTCTGTACCAATGGTATGTATATGAACGCGTTTACGCG
TCTACCCTTTTAAGGACGTTGGAGTGACTGAAACGAAATTTGGAATAACT
CACGGCTGTTTTGACCAGCGAAATAGGGAcagcaaagtttttgttttaat
aGTCCTCAATTAGTAAGGatcttgaaaatcaaaaaaccaactCAACACAA
CCAAAACACAACATACTTAATATCGTTATTGTTTAAACCTACAGTTAGTT
TAAATTCGCACAATACGCTGTTAAAAAGTTTTATCCATTTATAATGTCTT
TTTCTATCAAAATAACAAGAAAGAATAGCCTTTTCCGACGATTGCCTAAA
TATGAAGATGTATATTTTGATGATAATGATAACGATTCCTTGGCTAACAT
ATGTCATATGATATACTTTAGGAAGACGTAGACGAAAATATGAAGGATGG
TTTCGCCCTGGTCATCTCTGGAAAATCTCTGGTAAGAAGAAATACCTCGA
GTGTTGGATTACAGTATTACTTGGGATAAACGCCCCCTTGAACAAACCTC
CCtcctaaaaatcgaaaaattcaaTAAACGTCGGGGGAGttcattcgaag
taatacggtttTGCAGTTAGGGTTCTAGGAATCTCattttttagtcaatt
ttagtgaaaaataaattttcagtggAATACTTTTTGTGAATAtatttaca
ttttgaaaaatttttaagtCTCAAATGAATTTTACTGTAACTTTTCTTTC
CCAGGCTTTTGCGTTGTTACCTGAAGCAGAGCAAGACTTTTTACGCTTGG
CGCTCGCATGCAAAGCGGTTATTTGTTGTCGAGTGACTCCTTTACAAAAG
GTAAAAGCATATTTTGTTTCCTCCATTAAATCtcacagttttttttcaaa
gctAATATCTAAACAGGGTCAttaaaagataaattacagtggAGACTCCA
TAAGTCGAACACGCAGggggaaaaaaaattgttcGAGTTCAGTCAATTTC
GAGTTATGGTTTACAAGGCATTATTAacgggaccataaaacttgttcatg
ttaagaagacattcggttatagaggttcgagtcaAAGATACTTCACTgta
caatgggcttttccagaaaaaaaccgtgcaccccctgtcgAGGagattcc
aggcaatttcaggatcatacccctctggaattccgaatttttacaaattt
tcaatcattacccccttggaattccgaatttttttttgacggattttcgt
ctacccttatgcatttccactgcatttcaaaccttacccccttggaatgg
aaatggacctcctcaacaggggttgcacgatttttttctggaaaagccca
atgattGGTAGAAATACGGCTATAAGGTCCTCCTATAAATAAGTGAATTC
TAAAAACTGTTACGTATTCCCACACGTGTGTTATTTGAATACAAAATGAC
ATATGAACATATCAATGcaaaaattttattacaagAGTTGAATTATTATT
TCAACTACTCTATTTATCGAGCAAATGAACACCTTCaacgacataaaaat
ttccacaTCTCGAtactgtaacttggtctaattaATAGAATATAGGTTTA
GAATCACTGATTGTAAAGAGAAGTTTTTATCtttgaccactaagcaaaga
aatatagTTTTAATCAGTGATTCCGATTTTGTTATTAATCTTCGCTCTAA
ATAATGGTGTCgtaattagaagagggatgtcgaaattagaccaacttata
ATACCTGTCTTCCAATCTTCAACACCGTTTCCCCTTCCATTCAGGCATTG
GTTGTTGAGTTAGTGAAGAAGAATGTGAAGGCGACAACCTTGGCAATCGG
TGATGGTGCTAACGATGTCAGTATGATTAAAGGTTGGTTCGTATGATCGC
TTGCCCGTCTGTCCATGCTAAGGGTGAATCGCTTGAGAAACTTTTAACTT
AAGTTtccaattagatttttttagtgatctttTNGCTTGAGAAACTTTTA
ACTTAGTTtccaattagatttttttagtgatcttttcttcatttttaaaa
agtgtacGAAATTATTTCTAGTGATTCGCCCAAATACAACCCCAGTTTGA
CTGACCCGATTTATTTGCCTCTTTTAAGTGAAACTTTCGCcctccccccc
aaaaaaaaaatatatttttacgtACCACGGTTGAATCTAGCTAAATTTTA
ATTGGAAAAGTAAATCTAATTTGTCGAGATGCAGGGTGATTCAAATGATA
ATTTGAACTAGCAAGGTATAACTGTAGCTGTTTACAGCTGTATACTGTGA
TTGCATTTGTACTTCTTGTATTTTCATACTTTTTTAATACAGCGGCACAC
ATAGGAGTGGGTATCAGTGGGAAAGAAGGAAGACAGGCTGTTCTAGCTGC
GGATTATTCATTTGCTCAATTCAGGTATAAAATCTTGAATTACgttcaaa
ctgttacaatgcTTGCTTGGCTTATCAATCGATCGTCCATTTCAATAACA
ACCTGTCTCGTTTGCTCATCGTTGTTACttattttctaatattttaaaaa
acttggagaatatttattcattttccCGAAAATAAGATCGTTTGACCCCT
GTGGACCTAATACAGTAgattctctttaactcgaacctctacaactcgaa
tgtctccctAACTTGAACAAGTTGTCTCAGcccttcagttaaaaatgcct
tataaaacttaacgatgaaagtgaaaacTAGAAATTAAACACAacacatt
ttatttatttcttgacgTTATAAAACTTACTCCATAACGCGAAATCTCCT
TAACTCATTTGtgcgggttcgagttatagagactcaacTTTAATGATATC
TTACTTTCTGCTCCTTTGGCATGATGTTGCAGTAAACGTTATACGTTTAC
GTACACTGGAAACGTTTTGAATCGAATGTTTAATTATCTCTAGGTTTTTA
GAGAGATTGTTGCTGGTTCATGGTCGCTGGTCTTATTGGCGGATGTCAAA
GTTCTTGAATTATTTCTTCTACAAAAATTTCGCTTTCACATTAGTTCAAT
TTTGGTATAATCTTTTCACTGGATTCTCCGCTATGGTAAATATCACAATG
TCTAAATCTCTTAAATATTGaacgaaatttttattttcactgtATTTAGA
TTTTTAGAGTGACGGGCAAGTTTGTTAATCTTTGTTGAAGATTTGTTTGG
GTagcctattttgataaaaagatttcTCTTTCTAGTGCCAAACTCCTAAA
GTTTTGTAGAGAAAATCGTCGTTGTCGGTAGATCATCTGGCCATATTATG
CGCAGTGCTGTGGCTTCAATCCTCTGTGTGGTCTTCTGCTAAAGACCTGA
ACAATTGTGTTCGATGTTTCACTGTTTTAAAATGCTAGTCAAATTCAGAG
ATGTAAATCAAGGGTATAATTAGAGTAACCCATTAGAAAAGAGTGGCCCC
ATTCGGCTAAATAGCCAGCCATCGTCAAAATAGGGGCTTTTAGCTTAACC
CCTCCCCTCAACAATGCAGTTGCAACCTTACCTgcttaataaatgggaat
ttaACTTTTTCATGAGGCTATTATCAATTGCATTTCACGATTCGGGTCAC
ATAAGATTTCATTCTTATCATTATAGACTTTATATGACGATTACTTTCTA
TCCGTTTACAACGTTTGTTTCACCTCATTACCAGTCCTCGCAATGGGNG

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_010935	XLOC_010935	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
sc0000328	supercontig	sc0000328:21972..29520 +

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0.0781005	0.0102117	4.4442	4.41626	4.37853	2.6219	0.775004	1.42107	2.65724	1.96775	0.329924	2.61128	1.28643	0.759219	0.941988	1.51811	0.356955	0.804883	1.64465	0	0	0	2.73813	2.7878	0	0	0	0

Blast

[Close]

BLAST of TCONS_00019450 vs. Swiss-Prot (Human)
Match: AT8B2 (Phospholipid-transporting ATPase ID OS=Homo sapiens GN=ATP8B2 PE=1 SV=2)

HSP 1 Score: 462.611 bits (1189), Expect = 5.240e-151
Identity = 234/403 (58.06%), Postives = 297/403 (73.70%), Query Frame = 1

Query:   43 GEDEVYELLSVLDFDNVRKRMSVIVR-KDSKIMLYCKGADTIIYELLSNQSQPIMEPTQQHLDTFACEGLRTLCLASKELSQGEFEDWAEEFNEARTSTEDRDEKVFEVYCSIEKDLNLLGATAIEDKLQDGVPDAIANLAEANIKIFVLTGDKQETAINIGYSSMLLTENMHDVFVVEGDNLQTVHANINKYTDRMNEIQTLEGNAPKIYFSGVNDHESVPMEDVDENMKDGFALVISGKSLAFALLPEAEQDFLRLALACKAVICCRVTPLQKALVVELVKKNVKATTLAIGDGANDVSMIKAAHIGVGISGKEGRQAVLAADYSFAQFRFLERLLLVHGRWSYWRMSKFLNYFFYKNFAFTLVQFWYNLFTGFSAMTLYDDYFLSVYNVCFTSLPVLAMG 1248
            G    Y+LL++LDF+N+RKRMSVIVR  + KI LYCKGADTI+ + L + +Q ++  T  HL+ +A EGLRTL LA K+L +  +E+WAE   +A  + + R++++  +Y  +E ++ LLGATAIEDKLQ GVP+ IA L  ANIKI+VLTGDKQETA+NIGYS  +LT++M +VF+V G  +  V   + K  ++M +     GN     F+  +   S  +  V E +   +ALVI+G SLA AL  + E +FL  A ACKAVICCRVTPLQKA VVELVKK  KA TLAIGDGANDVSMIK AHIGVGISG+EG QAVLA+DYSF+QF+FL+RLLLVHGRWSY RM KFL YFFYKNFAFT+V FW+  F GFSA T+YD YF+++YN+ +TSLPVLAMG
Sbjct:  543 GTAITYQLLAILDFNNIRKRMSVIVRNPEGKIRLYCKGADTILLDRLHHSTQELLNTTMDHLNEYAGEGLRTLVLAYKDLDEEYYEEWAERRLQASLAQDSREDRLASIYEEVENNMMLLGATAIEDKLQQGVPETIALLTLANIKIWVLTGDKQETAVNIGYSCKMLTDDMTEVFIVTGHTVLEVREELRKAREKMMDSSRSVGNG----FTYQDKLSSSKLTSVLEAVAGEYALVINGHSLAHALEADMELEFLETACACKAVICCRVTPLQKAQVVELVKKYKKAVTLAIGDGANDVSMIKTAHIGVGISGQEGIQAVLASDYSFSQFKFLQRLLLVHGRWSYLRMCKFLCYFFYKNFAFTMVHFWFGFFCGFSAQTVYDQYFITLYNIVYTSLPVLAMG 941

The following BLAST results are available for this feature:

BLAST of TCONS_00019450 vs. Swiss-Prot (Human)

BLAST of TCONS_00019450 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
AT8B2	5.240e-151	58.06	Phospholipid-transporting ATPase ID OS=Homo sapien...	[more]

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TCONS_00019450 (transcript) - C. hemisphaerica