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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00019448 ID=TCONS_00019448|Name=TCONS_00019448|organism=Clytia hemisphaerica|type=transcript|length=1626bpRun BLAST on NCBI protein sequence of TCONS_00019448-protein >TCONS_00019448-protein ID=TCONS_00019448-protein|Name=TCONS_00019448-protein|organism=Clytia hemisphaerica|type=polypeptide|length=524bp MAILGLFRGLLSWVLSICGCGSDKKKKQHYVIRANDSEWNLKEGFPNNHIRun BLAST on NCBI transcript from alignment at sc0000328:11462..19236+ Legend: exonfive_prime_UTRCDS Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00019448 ID=TCONS_00019448|Name=TCONS_00019448|organism=Clytia hemisphaerica|type=transcript|length=7775bp|location=Sequence derived from alignment at sc0000328:11462..19236+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000328:11462..19236+ >TCONS_00019448 ID=TCONS_00019448|Name=TCONS_00019448|organism=Clytia hemisphaerica|type=CDS|length=28296bp|location=Sequence derived from alignment at sc0000328:11462..19236+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00019448 vs. Swiss-Prot (Human)
Match: AT8B4 (Probable phospholipid-transporting ATPase IM OS=Homo sapiens GN=ATP8B4 PE=1 SV=3) HSP 1 Score: 465.692 bits (1197), Expect = 1.701e-150 Identity = 237/492 (48.17%), Postives = 325/492 (66.06%), Query Frame = 1
Query: 112 CGSDKKKKQHYVIRANDSEWNLKEGFPNNHIKTSKYNFLTFIPLNLFEQMQRAANLYFVFQIIIMSIPYITALSPSSTAVPLTFVLLATMIKDGFDDYGRHKSDHSLNN-QTALVLNDKGVFVEKKWQDIQTGDIIKVRNDESISADVLALCTSEDSGLLFIETAELDGETNLKVRQPLQETFTTIKTEHDLAQFKGEIVCELPNNRLEKFQGNLLWDGQKLAVDNNNIVLRGCVLRNTPWIYGFVVYAGHDSKLMMNSGKGVFKRSKLDIMTNYLVIWIAGLLAVLCTFLSIMSYVWENSTGRKFQVYKPWPDIMKDSPAIIALMNWPGFVMVLNTLIPISLYISVEVIRLGQSFLIDWDLNLYYEENDTPAKARNTTLTEELGQIQYIFSDKTGTLTQNVMMFKECSINGTRFGQSQAEKDGEITMNDLESVTEPPFVDFSSNQYADPNFKFYDQALRDACVEGEESSIEFFRLLALCHTVMVEAKAATD 1584
C K ++ +++AND E+N K + +N I TSKYN LTF+P+NLFEQ QR AN YF+ +I+ IP I++L+ +T VPL V+ T +KD DDY RHKSD+ +NN Q+ +++N K +KW +++ GDIIK+ N++ ++AD+L L +SE GL ++ETAELDGETNLKVR L T LA F G +VCE+PNN+L+KF G L W K +++N I+LRGC+LRNT W +G V++AG D+KLM NSGK FKR+ +D + N LV+WI G L L L+I + +WE+ TG +F+ + W + K S L W ++++LNT++PISLY+SVEVIRLG S+ I+WD +YY PA AR TTL EELGQI+YIFSDKTGTLTQN+M FK CSING +G+ + D + ++ EP VDFS AD F+F+D L ++ G+ EF RLLALCHTVM E +A +
Sbjct: 3 CSEKKLREVERIVKANDREYNEKFQYADNRIHTSKYNILTFLPINLFEQFQRVANAYFLCLLILQLIPEISSLTWFTTIVPLVLVITMTAVKDATDDYFRHKSDNQVNNRQSEVLINSK--LQNEKWMNVKVGDIIKLENNQFVAADLLLLSSSEPHGLCYVETAELDGETNLKVRHALSVTSELGADISRLAGFDGIVVCEVPNNKLDKFMGILSWKDSKHSLNNEKIILRGCILRNTSWCFGMVIFAGPDTKLMQNSGKTKFKRTSIDRLMNTLVLWIFGFLICLGIILAIGNSIWESQTGDQFRTFLFWNEGEKSSVFSGFLTFW-SYIIILNTVVPISLYVSVEVIRLGHSYFINWDRKMYYSRKAIPAVARTTTLNEELGQIEYIFSDKTGTLTQNIMTFKRCSINGRIYGEVHDDLDQK---TEITQEKEP--VDFSVKSQADREFQFFDHHLMESIKMGDPKVHEFLRLLALCHTVMSEENSAGE 486 The following BLAST results are available for this feature:
BLAST of TCONS_00019448 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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